BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: halleri_transcript_ahg.fa
32,672 sequences; 38,939,717 total letters
Query= AT1G52410.2
Length=2577
Score E
Sequences producing significant alignments: (Bits) Value
Ahg474366 jgi|Araly1|474366|fgenesh2_kg.1__4320__AT1G52410.1 3664 0.0
Ahg904533 jgi|Araly1|904533|Al_scaffold_0003_1661 231 1e-59
> Ahg474366 jgi|Araly1|474366|fgenesh2_kg.1__4320__AT1G52410.1
Length=2527
Score = 3664 bits (1984), Expect = 0.0
Identities = 2350/2521 (93%), Gaps = 47/2521 (2%)
Strand=Plus/Plus
Query 23 CTCGTTCTTGTAATGGAAATCTACACCATGAAAACGAATTTTCTTGTACTGGCTTTGTCT 82
|||||||||||||||||||||| | |||||||||||||||||||||||||||||||||||
Sbjct 1 CTCGTTCTTGTAATGGAAATCTCCGCCATGAAAACGAATTTTCTTGTACTGGCTTTGTCT 60
Query 83 TTGTGTATCCTTCTTTCAAGCTTCCATGAGGTTTCTTGTCAGGATGATGGTAGTGGTTTG 142
||||| | |||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 61 CTGTGTCTTCTTCTTTCAAGCTTCCATGAGGTTTCTTGTCAGGATGATGGTAGTGGTTTG 120
Query 143 AGTAATTTGGATCTAATAGAACGTGATTATCAAGATAGTGTCAATGCTCTTCAAGGCAAG 202
|||||||| ||||||||||||||||| |||||||||||||||||||||||||||||||||
Sbjct 121 AGTAATTTTGATCTAATAGAACGTGACTATCAAGATAGTGTCAATGCTCTTCAAGGCAAG 180
Query 203 GACGATGAAGATCAGTCTGCAAAGATACAGAGTGAAAACCAGAATAACACTACAGTGACT 262
|| |||||||||||||||||||||||||||||||| |||||||||||||||||||||| |
Sbjct 181 GAAGATGAAGATCAGTCTGCAAAGATACAGAGTGACAACCAGAATAACACTACAGTGAGT 240
Query 263 GATAAGAACACTATTTCTCTATCTCTATCAGATGAATCTGAGGTTGGATCTGTTAGTGAT 322
|||||||||||||||||||| ||||||||||||||| |||||||||||||||||||||||
Sbjct 241 GATAAGAACACTATTTCTCTGTCTCTATCAGATGAAACTGAGGTTGGATCTGTTAGTGAT 300
Query 323 GAAAGCGTTGGACGTTCGAGTCTGTTGGATCAAATCAAACTTGAATTCGAAGCTCATCAC 382
||||| ||| || |||||||||||||||||||||| |||||||||||||||||||||||
Sbjct 301 GAAAGTGTTAAACATTCGAGTCTGTTGGATCAAATCGAACTTGAATTCGAAGCTCATCAC 360
Query 383 AATAGTATTAACCAAGCTGGATCTGATGGTGTCAAGGCTGAATCCAAGGATGATGATGAA 442
||||| |||||||||||||||||||||||||||| ||||||||||| | |||||||||
Sbjct 361 AATAGCCTTAACCAAGCTGGATCTGATGGTGTCAAAGCTGAATCCAA-G--GATGATGAA 417
Query 443 GAATTATCTGCTCATAGACAGAAAATGTTGGAAGAAATCGAACATGAGTTTGAAGCTGCT 502
||||||||||||||||||||||||||||||||||||||||||| || ||||||||||||
Sbjct 418 GAATTATCTGCTCATAGACAGAAAATGTTGGAAGAAATCGAACGCGAATTTGAAGCTGCT 477
Query 503 TC-AGATAGTCTGAAACAACTAAAGACTGATGATGTAAACGAAGGAAATGATGAAGAACA 561
|| || ||||||||||||||||||||||||||| |||||||||||||||||||||||||
Sbjct 478 TCAAG-TAGTCTGAAACAACTAAAGACTGATGAAATAAACGAAGGAAATGATGAAGAACA 536
Query 562 TTCTGCAAAGAGGCAAAGTTTGTTGGAAGAGATCGAACGTGAGTTTGAAGCTGCTACAAA 621
|||||||||||||||||||||||||||||||||||||| ||||| ||||||||||||||
Sbjct 537 ATCTGCAAAGAGGCAAAGTTTGTTGGAAGAGATCGAACGCGAGTTCGAAGCTGCTACAAA 596
Query 622 AGAACTTGAACAACTAAAGGTTAATGACTTCACCGGGGACAAAGATGACGAAGAACACTC 681
||| |||||||||||||||||||||||||||||||| || ||||||||||||||||| ||
Sbjct 597 AGAGCTTGAACAACTAAAGGTTAATGACTTCACCGGTGAAAAAGATGACGAAGAACAATC 656
Query 682 TGCAAAGAGAAAAAGTATGCTTGAAGCTATTGAACGCGAGTTTGAAGCTGCTATGGAAGG 741
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 657 TGCAAAGAGAAAAAGTATGCTTGAAGCTATTGAACGCGAGTTTGAAGCTGCTATGGAAGG 716
Query 742 CATTGAAGCACTTAAGGTTTCTGATTCCACAGGAAGCGGAGATGATGAAGAACAATCTGC 801
|||||||| ||| |||||||||||||| || ||||| |||||||||||||||||||||||
Sbjct 717 CATTGAAGAACTAAAGGTTTCTGATTCTACCGGAAGTGGAGATGATGAAGAACAATCTGC 776
Query 802 AAAGAGACTAAGTATGCTTGAAGAGATCGAACGGGAATTTGAAGCTGCTTCAAAAGGTCT 861
||||||||||||||||||||||||||||||||||||||||||||||||| |||| |||||
Sbjct 777 AAAGAGACTAAGTATGCTTGAAGAGATCGAACGGGAATTTGAAGCTGCTACAAAGGGTCT 836
Query 862 TGAACAACTAAGGGCTAGCGATTCAACCGCGGACAATAACGAAGAAGAACACGCTGCAAA 921
||||||||||| |||| |||||||||||| |||||| |||||||||||||| ||||||||
Sbjct 837 TGAACAACTAAAGGCTGGCGATTCAACCGGGGACAAAAACGAAGAAGAACAAGCTGCAAA 896
Query 922 GGGACAAAGTTTGTTAGAAGAGATCGAACGAGAGTTCGAAGCTGCTACAGAGAGCCTTAA 981
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 897 GGGACAAAGTTTGTTAGAAGAGATCGAACGAGAGTTCGAAGCTGCTACAGAGAGCCTTAA 956
Query 982 GCAACTTCAAGTTGATGATTCTACTGAAGACAAAGAACACTTTACAGCTGCAAAGAGGCA 1041
|| ||||||||||||||||||||||||||||| || | || | | |||||||||||||
Sbjct 957 GCTACTTCAAGTTGATGATTCTACTGAAGACACAG-A-AC---A-ATCTGCAAAGAGGCA 1010
Query 1042 AAGTCTGCTGGAAGAGATTGAACGTGAATTTGAAGCTGCAACAAAAGATCTTAAACAACT 1101
|||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1011 AAGTATGCTGGAAGAGATTGAACGTGAATTTGAAGCTGCAACAAAAGATCTTAAACAACT 1070
Query 1102 AAATGATTTCACTGAAGGCAGTGCTGATGATGAACAATCTGCAAAGAGAAACAAAATGTT 1161
|||||||||||||||||||| ||||||||||||||| |||||||||||||||||||||||
Sbjct 1071 AAATGATTTCACTGAAGGCAATGCTGATGATGAACACTCTGCAAAGAGAAACAAAATGTT 1130
Query 1162 GGAAGATATCGAACGCGAATTTGAAGCTGCTACAATAGGTCTTGAACAACTAAAGGCTAA 1221
|||||| |||||||||||||||||||||||||||| ||||||||||||||||||||||||
Sbjct 1131 GGAAGAAATCGAACGCGAATTTGAAGCTGCTACAAAAGGTCTTGAACAACTAAAGGCTAA 1190
Query 1222 TGATTTCTCTGAAGGCAATAATAATGAAGAACAATCTGCA-AAGAGAAAGAGTATGCTTG 1280
||||||| ||||||||| | | |||||||||||||||||| || ||||||||||||||||
Sbjct 1191 TGATTTCACTGAAGGCAGTGACAATGAAGAACAATCTGCACAA-AGAAAGAGTATGCTTG 1249
Query 1281 AAGAGATCGAACGCGAGTTCGAAGCTGCTATTGGAGGTCTTAAACAGATCAAAGTTGATG 1340
||||||| ||||||||||| ||||||||||||||||||||||||||||| ||||||||||
Sbjct 1250 AAGAGATTGAACGCGAGTTTGAAGCTGCTATTGGAGGTCTTAAACAGATAAAAGTTGATG 1309
Query 1341 ATTCCAGAAATCTT-GAAGAAGAATCTGCTAAGAGAAAGATAATTTTGGAAGAGATGGAA 1399
|||||||||| | | ||||||||||||||||||||||||||||| |||||||||||||||
Sbjct 1310 ATTCCAGAAA-CATCGAAGAAGAATCTGCTAAGAGAAAGATAATGTTGGAAGAGATGGAA 1368
Query 1400 CGTGAATTTGAAGAAGCACACAGTGGTATTAATGCAAAGGCTGACAAAGAAGAATCTGCA 1459
|| ||||||||||||||||||||||| ||||||| ||||||||||| |||||||||||||
Sbjct 1369 CGCGAATTTGAAGAAGCACACAGTGGCATTAATGGAAAGGCTGACACAGAAGAATCTGCA 1428
Query 1460 AAGAAACAGAGTGGCTCTGCTATACCAGAGGTTCTTGGACTAGGACAGTCAGGTGGTTGT 1519
||||||||||||| || ||||| |||||||||||||||||| ||| || ||| || ||||
Sbjct 1429 AAGAAACAGAGTGACTATGCTACACCAGAGGTTCTTGGACTTGGAAAGCCAGATGTTTGT 1488
Query 1520 AGCTGTTCTAAACAAGAC---G-------AA-----GA---T--TCCT-CGATTGTTATA 1558
||||||| ||| |||||| | || || | | || |||||||||||
Sbjct 1489 AGCTGTTTTAACCAAGACAATGCTGGTTCAAAACACGACGATGATGCTTCGATTGTTATA 1548
Query 1559 CCAACAAAATATAGCATAGAAGATATCCTCTCTGAAGAATCTGCAGTCCAGGGAACAGAG 1618
|| || ||||||||||||||||| ||||| ||||||||||||||||||||||||||||||
Sbjct 1549 CCGACTAAATATAGCATAGAAGAGATCCTATCTGAAGAATCTGCAGTCCAGGGAACAGAG 1608
Query 1619 ACTTCTAGTCTCACCGCGTCTTTGACTCAACTCGTTGAGAATCACAGGAAAGAAAAGGAA 1678
|||||||||||||| |||||||||||||||||||||||||||||| ||||||||||||||
Sbjct 1609 ACTTCTAGTCTCACAGCGTCTTTGACTCAACTCGTTGAGAATCACCGGAAAGAAAAGGAA 1668
Query 1679 TCTCTACTCGGACACAGAGTTCTCACTTCT-C--CTTCTA-TA--GCTTCTTCCACAAGC 1732
|||| ||| ||||||||||||||||||||| | ||||| | |||||||||||||||
Sbjct 1669 TCTCCACTGGGACACAGAGTTCTCACTTCTTCTTCTTCTTCTTCTGCTTCTTCCACAAGC 1728
Query 1733 GAATCATCTGCTACATCAGAGACTGTAGAAACCCTAAGGGCTAAACTGAATGAGCTTCGC 1792
|||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||
Sbjct 1729 GAATCATCTGCTACATCAGAGACTGTAGAAACCCTAAGGGCTAAACTGAAAGAGCTTCGC 1788
Query 1793 GGCTTAACCGCTCGTGAGCTTGTGACACGTAAAGATTTCGGTCAGATTCTCATTACGGCT 1852
|||||||||||||||||||||||||||||| ||||||||| |||||||||||||||||||
Sbjct 1789 GGCTTAACCGCTCGTGAGCTTGTGACACGTCAAGATTTCGATCAGATTCTCATTACGGCT 1848
Query 1853 GCGAGTTTTGAAGAGCTAAGTTCAGCTCCAATCAGTTACATTTCTAGGTTAGCTAAATAC 1912
|||||||| ||||||||||| |||||||||||||||||||| ||||||||||||||||||
Sbjct 1849 GCGAGTTTCGAAGAGCTAAGCTCAGCTCCAATCAGTTACATCTCTAGGTTAGCTAAATAC 1908
Query 1913 AGAAACGTCATCAAAGAAGGACTTGAAGCTTCTGAGAGAGTTCACATCGCGCAGGTACGA 1972
|||||||||||||||||||||||||||||||||||| ||||||||||||| |||| ||||
Sbjct 1909 AGAAACGTCATCAAAGAAGGACTTGAAGCTTCTGAGCGAGTTCACATCGCACAGGCACGA 1968
Query 1973 GCAAAAATGCTCAAAGAAGTTGCCACGGAGAAGCAAACCGCCGTGGACACTCATTTCGCA 2032
|| | |||||||||||||||||||||||||||||||||| |||||||| | ||||| |||
Sbjct 1969 GCGACAATGCTCAAAGAAGTTGCCACGGAGAAGCAAACCTCCGTGGACTCCCATTTTGCA 2028
Query 2033 ACCGCTAAAAAGCTTGCTCAAGAAGGAGACGCGTTGTTCGTTAAAATCTTCGCAATCAAG 2092
|||||||||| |||||||||| ||||||| ||||||||||||| |||||| || ||||||
Sbjct 2029 ACCGCTAAAACGCTTGCTCAAAAAGGAGATGCGTTGTTCGTTAGAATCTTTGCGATCAAG 2088
Query 2093 AAACTGTTGGCGAAACTT-GAAGCAGAGAAAGAATCTGTTGATGGAAAGTTTAAGGAGAC 2151
|||||||||||||| || |||||||||||||||||| |||||| |||||||||||||||
Sbjct 2089 AAACTGTTGGCGAAG-TTAGAAGCAGAGAAAGAATCTATTGATGCAAAGTTTAAGGAGAC 2147
Query 2152 TGTGAAAGAACTTTCTCATCTTCTGGCTGATGCTTCTGAGGCTTACGAAGAGTATCATGG 2211
||||||||||||||||||| |||| | |||||||||||||||||||||||||||||||||
Sbjct 2148 TGTGAAAGAACTTTCTCATTTTCTTGTTGATGCTTCTGAGGCTTACGAAGAGTATCATGG 2207
Query 2212 CGCGGTGAGGAAGGCGAAAGACGAGCAAGCGGCTGAGGAATTTGCGAAAGAGGCGACGCA 2271
||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||
Sbjct 2208 CGCGGTGAGGAAGGCGAAAGACGAGCAAGCGGCTGAGGAATTTGCGAAAGAGGCGACACA 2267
Query 2272 AAGTGCAGAGATCATTTGGGTTAAGTTTCTTAGTTCTCTTTAGAGAACAATTGAGATTCT 2331
|||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||
Sbjct 2268 AAGTGCAGAGATCATTTGGGTTAAGTTTCTTAGTTCTCTTTAGAGAGCAATTGAGATTCT 2327
Query 2332 TGGTTGTGTTAAGAGCAAATCTAGAGCTCTTGTTGGTTCTTGTTATGTATTTTGTGATGA 2391
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 2328 TGGTTGTGTTAAGAGCAAATCTAGAGCTCTTGTTGGTTCTTGTTATGTATTTTGTGATGA 2387
Query 2392 TGTTCTGTTTCAGAGTTTGTGTGTTGGTTGTATCAGGAGAAAGAGGCTGGGAGATAGAGA 2451
|||||||||||||||| |||||||||||| |||||||||| ||| | || ||||||||||
Sbjct 2388 TGTTCTGTTTCAGAGTCTGTGTGTTGGTTATATCAGGAGAGAGAAGTTGAGAGATAGAGA 2447
Query 2452 GAAAGAGAGTCTCTGCGAAAACTAATAATGTTTTTTCAGATATCTA--AATAATAAGCTT 2509
| ||||||||||||| ||||||||||||||||||||||||| |||| ||||| ||||||
Sbjct 2448 GGAAGAGAGTCTCTGTGAAAACTAATAATGTTTTTTCAGATTTCTACTAATAA-AAGCTT 2506
Query 2510 T 2510
|
Sbjct 2507 T 2507
Score = 161 bits (87), Expect = 2e-38
Identities = 158/190 (83%), Gaps = 13/190 (7%)
Strand=Plus/Plus
Query 1126 TGATGATGAACAATCTGCAAAGAGAAACAAAATGTTGGAAGATATCGAACGCGAATTTGA 1185
|||||| ||| |||||| | ||| | |||||||||||||| |||||||||||||||||
Sbjct 411 TGATGAAGAATTATCTGCTCATAGACAGAAAATGTTGGAAGAAATCGAACGCGAATTTGA 470
Query 1186 AGCTGCTACAA-TAGGTCTTG-AACAACTAAAGGCTAATG-ATTTCTCTGAAGGCAATAA 1242
||||||| ||| || ||| || ||||||||||| || ||| | | | ||||| | ||
Sbjct 471 AGCTGCTTCAAGTA-GTC-TGAAACAACTAAAGACTGATGAAATAAAC-GAAGG--A-AA 524
Query 1243 TAATGAAGAACAATCTGCAAAGA-GAAAGAGTATGCTT-GAAGAGATCGAACGCGAGTTC 1300
| ||||||||||||||||||||| | || ||| || || |||||||||||||||||||||
Sbjct 525 TGATGAAGAACAATCTGCAAAGAGGCAA-AGTTTG-TTGGAAGAGATCGAACGCGAGTTC 582
Query 1301 GAAGCTGCTA 1310
||||||||||
Sbjct 583 GAAGCTGCTA 592
> Ahg904533 jgi|Araly1|904533|Al_scaffold_0003_1661
Length=2322
Score = 231 bits (125), Expect = 1e-59
Identities = 223/269 (83%), Gaps = 12/269 (4%)
Strand=Plus/Plus
Query 467 ATGTTGGAAGAAATCGAACATGAGTTTGAAGCTGCTTCAGATAGTCTGAAACAACTAAAG 526
|||||||| || || |||| ||| |||||||||||| || ||||||| || ||||||||
Sbjct 1033 ATGTTGGATGAGATTGAACGTGAATTTGAAGCTGCTACAAATAGTCTTAAGCAACTAAA- 1091
Query 527 AC-TGATGATGTAAAC-GAAGGAAATGATGAA-GAACATTCTGCAAAGAGGCAAAGTTTG 583
| ||| ||| | || |||||| ||||| || ||||| ||||||||||| || ||| ||
Sbjct 1092 CCTTGACGAT-TTCACTGAAGGAGATGAT-AATGAACAATCTGCAAAGAGACATAGTATG 1149
Query 584 -TTGGAAGAGATCGAACGTGAGTTTGAAGCTGCTACAAAAGAACTTGAACAACTAAAGGT 642
|| |||| || |||| |||||||||||||||||||||| |||||| | |||||||
Sbjct 1150 CTT-GAAGCTATAGAACACGAGTTTGAAGCTGCTACAAAAGGTCTTGAAGAGCTAAAGGC 1208
Query 643 TAATGACTTC-ACCGGGGACAAAGATGACGAAGAACAC-TCTGCAAAGAGAAAAAGTATG 700
||||||| || ||||| ||||| ||||| || |||||| | ||||| |||||||| ||||
Sbjct 1209 TAATGAC-TCAACCGGCGACAAGGATGATGATGAACACGT-TGCAAGGAGAAAAATTATG 1266
Query 701 CTTGAAGCTATTGAACGCGAGTTTGAAGC 729
|||||||||||||||||||||||||||||
Sbjct 1267 CTTGAAGCTATTGAACGCGAGTTTGAAGC 1295
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 97168214995
Database: halleri_transcript_ahg.fa
Posted date: Sep 25, 2014 2:02 AM
Number of letters in database: 38,939,717
Number of sequences in database: 32,672
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5