BLASTN 2.2.26+ Reference: Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000), "A greedy algorithm for aligning DNA sequences", J Comput Biol 2000; 7(1-2):203-14. Database: halleri_transcript_ahg.fa 32,672 sequences; 38,939,717 total letters Query= AT1G52420.1 Length=2611 Score E Sequences producing significant alignments: (Bits) Value Ahg474368 jgi|Araly1|474368|fgenesh2_kg.1__4322__AT1G52420.1 3659 0.0 Ahg929405 jgi|Araly1|929405|scaffold_301862.1 1136 0.0 Ahg923318 jgi|Araly1|923318|scaffold_104599.1 183 4e-45 > Ahg474368 jgi|Araly1|474368|fgenesh2_kg.1__4322__AT1G52420.1 Length=2529 Score = 3659 bits (1981), Expect = 0.0 Identities = 2239/2362 (95%), Gaps = 24/2362 (1%) Strand=Plus/Plus Query 15 GAAGCTGAAGCAGAAGAAGAAGCAGActctctctctctctTTGCTTCAGCTTTTGCGCAG 74 ||||||||||| ||||||||||||||||||||||||| |||||||||||||| ||| Sbjct 7 GAAGCTGAAGC---TGAAGAAGCAGACTCTCTCTCTCTCTCTGCTTCAGCTTTTGTTCAG 63 Query 75 CTCTGATCTCTGAAGAAGACGAAGACTTAATCT-ATACAAAAATTGCTGCGAATTCGCGT 133 |||||||||||||||||||||||||||| ||| || || | |||||||| ||||||||| Sbjct 64 CTCTGATCTCTGAAGAAGACGAAGACTTTTTCTAAT-CATAGATTGCTGCAAATTCGCGT 122 Query 134 CAATTTAGCTGCGCTTTCTCGATCTTTTGTACTTCGGAAGCTGCAACGTTGTAGAATCGG 193 ||||||||||||| | | || ||||||||||||||| ||||||| || ||||| Sbjct 123 CAATTTAGCTGCG---T-T---TC----GTACTTCGGAAGCTGAAACGTTGGAGCATCGG 171 Query 194 CGGATCCAAGTCGGTAATTACTCAGCTTCTGGTTGTGATGTTAATGTGAGCTGCCCAATT 253 ||||||||||||||||||||||||||||||||||||| |||||||||||||||| ||||| Sbjct 172 CGGATCCAAGTCGGTAATTACTCAGCTTCTGGTTGTGGTGTTAATGTGAGCTGCTCAATT 231 Query 254 TTGTGATGGTGGATTGAAGCGGTTGAATTTTTCTACTTCAGATTGCTTTTGTGTTTGATA 313 ||||| | ||||||||||||||||||||||| ||| ||| |||||||||||||||||||| Sbjct 232 TTGTGTTCGTGGATTGAAGCGGTTGAATTTTACTAGTTCCGATTGCTTTTGTGTTTGATA 291 Query 314 TGTTACTCATAATGAGATTATAG-CCTTGAAATTATGGAGGAGATTCGGTTATCGCCGCT 372 || | || ||| ||||||||||| | ||||||| |||||||||||||||||||||||||| Sbjct 292 TGATGCTTATAGTGAGATTATAGTCATTGAAATCATGGAGGAGATTCGGTTATCGCCGCT 351 Query 373 GAGACAGACAAGTGTTAAGTCTTCACTGTCAGGGAGGTCTACTCCAAGGGGTACACCTAG 432 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct 352 GAGACAGACAAGTGTTAAGTCTTCACTGTCAGGGAGGTCTACTCCAAGGGGTACACCTAG 411 Query 433 AGTGTATTCTGGTAGGACTCCGCGTAGAGGTCATGGTGGAGGAGGAGCGTTTCAGTGGTT 492 | || |||||||||||||||| ||||||||||||| |||||||||||| ||||||| ||| Sbjct 412 ATTGCATTCTGGTAGGACTCCTCGTAGAGGTCATGTTGGAGGAGGAGCATTTCAGTTGTT 471 Query 493 TCGTAGTAGCCGGTTGGTTTATTGGCTGCTTTTGATTACGCTTTGGACGTATCTTGGATT 552 ||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||| Sbjct 472 TCGTAGTAGCCGGTTGGTTTATTGGCTGCTTTTGATTACTCTTTGGACGTATCTTGGATT 531 Query 553 TTATGTTCAGTCTAGGTGGGCACATGATAATGAAAGCAAAGTTGAGTTTTTACGGTTTGG 612 |||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||| Sbjct 532 TTATGTTCAGTCTAGGTGGGCACATGATAATGAAAGTAAAGTTGAGTTTTTACGGTTTGG 591 Query 613 AGGCAGACCGAGAAAGGATGAGTTATATATGGAGAAGATTAAAGGACTGGATGTTGTTGC 672 |||||||||||||||||||| |||||| |||||||||| |||||| |||||| |||||| Sbjct 592 AGGCAGACCGAGAAAGGATGTTTTATATGTGGAGAAGATCAAAGGAATGGATGCTGTTGC 651 Query 673 TAATGAGAATTCTGAGGCTTTGGTTAATATTACTGGTAAAGATGATGCTGGTTC-GAATA 731 |||||||||||||||||||||||| |||||||||||||||||||||||||| || || || Sbjct 652 TAATGAGAATTCTGAGGCTTTGGTAAATATTACTGGTAAAGATGATGCTGG-TCTGAGTA 710 Query 732 AGAGGACGGATGTTAGTCTGATCAAGAAAGATGATGGGGTTTCTCGACGGAGCTTGAGTT 791 ||||||||||||||||||| ||||||||||||||||||| |||||||||||||||||||| Sbjct 711 AGAGGACGGATGTTAGTCTAATCAAGAAAGATGATGGGGCTTCTCGACGGAGCTTGAGTT 770 Query 792 CCAAGCAGAAGACGAGAAAAACTGTCCGGACTTCTCGTAGTAAGATCCGTGTTAAGCAGA 851 ||||||||||||| |||||||||||||||| ||| ||||||||| | |||| |||||||| Sbjct 771 CCAAGCAGAAGACTAGAAAAACTGTCCGGAGTTCACGTAGTAAGGTACGTGGTAAGCAGA 830 Query 852 AGGTGATTAAAGAGGTACTTGAGACTAAGGATTTGGATGATGAGCAAGATCCACAACTTC 911 ||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||| Sbjct 831 AGGTGATTAAAGAGGTACTTGAGACTAAGGATTTGGATGCTGAGCAAGATCCACAACTTC 890 Query 912 CATTGACAAATGCTACTTATGGTAAGCTTCTTGGTCCCTTTGGATCACTAGAGGATAAAG 971 ||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||| Sbjct 891 CATTGACAAATGCTACTTATGGTAAGCTTCTTGGTCCTTTTGGATCACTAGAGGATAAAG 950 Query 972 TTCTTGAATGGAGCCCGCATAGAAGATCTGGGACTTGCGACAGGAAATCAGATTTTAAAC 1031 |||||||||||||||| |||||| ||||||||||||| ||| |||||||||||||||||| Sbjct 951 TTCTTGAATGGAGCCCACATAGACGATCTGGGACTTGTGACCGGAAATCAGATTTTAAAC 1010 Query 1032 GCCTTGTTTGGTCAAGGAGATTCGTCCTGCTTTTCCACGAGCTATCAATGACTGGTGCTC 1091 ||||||||||||| ||||||||||||||||||||||| |||||||||||||| || |||| Sbjct 1011 GCCTTGTTTGGTCGAGGAGATTCGTCCTGCTTTTCCATGAGCTATCAATGACAGGCGCTC 1070 Query 1092 CAATTTCTATGATGGAGCTGGCTTCAGAGCTTTTGAGCTGTGGTGCAACAGTCTCTGCAG 1151 ||||||| ||||||||||||||||| |||||||||||||||||||||||||||||||||| Sbjct 1071 CAATTTCAATGATGGAGCTGGCTTCGGAGCTTTTGAGCTGTGGTGCAACAGTCTCTGCAG 1130 Query 1152 TAGTTCTTAGCAGGAGAGGTGGATTGATGCAAGAGCTCAGTAGGAGAAGGATCAAAGTTG 1211 ||||||| ||||||||||||||||||||||||||||||| |||||||||||||||||||| Sbjct 1131 TAGTTCTCAGCAGGAGAGGTGGATTGATGCAAGAGCTCACTAGGAGAAGGATCAAAGTTG 1190 Query 1212 TTGAAGACAAAGGAGAACTCAGCTTCAAGACTGCCATGAAAGCAGATTTGATCATCGCAG 1271 |||||||||||||||||||||||||||||||| ||||||||||||||||| ||||||||| Sbjct 1191 TTGAAGACAAAGGAGAACTCAGCTTCAAGACTTCCATGAAAGCAGATTTGGTCATCGCAG 1250 Query 1272 GATCAGCAGTGTGTACCTCATGGATAGATCAATACATGAATCATCATCCAGCTGGTGGAA 1331 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct 1251 GATCAGCAGTGTGTACCTCATGGATAGATCAATACATGAATCATCATCCAGCTGGTGGAA 1310 Query 1332 GTCAAATAGCTTGGTGGATAATGGAGAATCGACGAGAATACTTTGATCGAGCGAAACCAG 1391 ||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct 1311 GTCAAATCGCTTGGTGGATAATGGAGAATCGACGAGAATACTTTGATCGAGCGAAACCAG 1370 Query 1392 TTCTTGACCGA-GTGAAAATGCTGATTTTCTTATCTGAATCACAGAGCAGACAATGGTTA 1450 ||||||||| | |||||||||||||||||||||||||||||||||||||||||||||||| Sbjct 1371 TTCTTGACC-ATGTGAAAATGCTGATTTTCTTATCTGAATCACAGAGCAGACAATGGTTA 1429 Query 1451 ACATGGTGCGAGGAGGAGCATATAAAGCTTAGATCACAACCAGTGATTGTTCCACTATCT 1510 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct 1430 ACATGGTGCGAGGAGGAGCATATAAAGCTTAGATCACAACCAGTGATTGTTCCACTATCT 1489 Query 1511 GTTAATGATGAGTTAGCTTTTGTAGCGGGGATTCCTTCTTCACTCAACACACCAACACTT 1570 |||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||| Sbjct 1490 GTTAATGATGAGTTAGCTTTTGTAGCTGGGATTCCTTCTTCACTCAACACACCAACACTT 1549 Query 1571 TCACCAGAGAAAATGAGGGTGAAGAGACAAATATTACGCGAATCAGTGAGAACAGAGTTA 1630 ||||||||||||||||||| |||||||||||||||||||||||||||||||| |||||| Sbjct 1550 TCACCAGAGAAAATGAGGGAGAAGAGACAAATATTACGCGAATCAGTGAGAATGGAGTTA 1609 Query 1631 GGAATAACAGATTCAGATATGCTTGTGATGTCTCTTAGCAGCATAAACCCAACAAAGGGA 1690 ||| |||||||| |||||||||||||||||||||||||||||||||||||||||||||| Sbjct 1610 GGATTAACAGATGCAGATATGCTTGTGATGTCTCTTAGCAGCATAAACCCAACAAAGGGG 1669 Query 1691 CAACTTCTTCTCCTTGAATCTATTGCCTTGGCTCTTTCTGAGAGAGGACAAGAATCTCAA 1750 ||||||||||||||||||||||| | |||||||||||||||||||||| ||||||||||| Sbjct 1670 CAACTTCTTCTCCTTGAATCTATCGTCTTGGCTCTTTCTGAGAGAGGAAAAGAATCTCAA 1729 Query 1751 AGGAATCACAAGGGGATCATTAGGAAAGAAAAGGTTAGTCTCTCCAGCAAACATCGTTTA 1810 || ||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct 1730 AGAAATCACAAGGGGATCATTAGGAAAGAAAAGGTTAGTCTCTCCAGCAAACATCGTTTA 1789 Query 1811 AGAGGTTCATCACGACAGATGAAAAGTGTTTCTCTCACACTTGACAATGGCTTAAGAAGA 1870 ||||||||||||||||||||||||||||||||||||||||||||||||| | | ||||| Sbjct 1790 AGAGGTTCATCACGACAGATGAAAAGTGTTTCTCTCACACTTGACAATGCCGTGAGAAGC 1849 Query 1871 GAGAAGCAAGAACTTAAAGTTCTTTTAGGATCCGTGGGTTCAAAGAGCAACAAAGTTGGA 1930 |||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||| Sbjct 1850 GAGAAGCAAGAACTTAAAGTTCTTTTAGGATCAGTGGGTTCAAAGAGCAACAAAGTTGGA 1909 Query 1931 TACGTTAAAGAGATGTTAAGCTTCTTGTCAAACAGCGGAAACTTATCTAAGTCGGTAATG 1990 || ||||||||||||||||||||||| ||||| | |||||||||||||||||| |||||| Sbjct 1910 TATGTTAAAGAGATGTTAAGCTTCTTATCAAAAAACGGAAACTTATCTAAGTCAGTAATG 1969 Query 1991 TGGACTCCTGCAACAACCCGTGTTGCTTCATTATACTCTGCAGCAGATGTCTACGTTACA 2050 |||||||| |||||||| |||||||||||||||||||||||||||||||||||||||||| Sbjct 1970 TGGACTCCCGCAACAACTCGTGTTGCTTCATTATACTCTGCAGCAGATGTCTACGTTACA 2029 Query 2051 AACTCCCAGGGAGTTGGTGAAACATTTGGTAGAGTGACAATCGAAGCAATGGCTTATGGA 2110 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct 2030 AACTCCCAGGGAGTTGGTGAAACATTTGGTAGAGTGACAATCGAAGCAATGGCTTATGGA 2089 Query 2111 CTTGCAGTGGTGGGAACAGATGCAGGAGGAACCAAAGAGATGGTTCAACACAACATGACT 2170 |||||||| ||||||||||| ||||||||||||||||||||||||||||||||| ||||| Sbjct 2090 CTTGCAGTAGTGGGAACAGACGCAGGAGGAACCAAAGAGATGGTTCAACACAACGTGACT 2149 Query 2171 GGTCTACTTCACTCAATGGGGA-GATCCGGTAACAAAGAATTAGCTCATAATCTCTTGTA 2229 |||||||||||||||||||| | ||||||||||||||||||||||||||||||||||||| Sbjct 2150 GGTCTACTTCACTCAATGGG-ACGATCCGGTAACAAAGAATTAGCTCATAATCTCTTGTA 2208 Query 2230 TCTACTTAGGAATCCAGACGAGAGGCTACGATTGGGGAGTGAAGGACGCAAAATGGTTGA 2289 ||||||||||||| |||||| ||||||||||||||| ||||||||||||||||||||||| Sbjct 2209 TCTACTTAGGAATGCAGACGCGAGGCTACGATTGGGAAGTGAAGGACGCAAAATGGTTGA 2268 Query 2290 GAAAATGTACATGAAGCAACATATGTACAAGCGATTCGTCGATGTTCTGGTCAAATGCAT 2349 |||||||||||||||||||||||||||||||||||||||||||||||| |||||||| || Sbjct 2269 GAAAATGTACATGAAGCAACATATGTACAAGCGATTCGTCGATGTTCTAGTCAAATGTAT 2328 Query 2350 GAGACCTTAAAAAAGCCCTTTG 2371 |||||| ||||||| | ||||| Sbjct 2329 GAGACCATAAAAAA-CACTTTG 2349 > Ahg929405 jgi|Araly1|929405|scaffold_301862.1 Length=2131 Score = 1136 bits (615), Expect = 0.0 Identities = 1176/1439 (82%), Gaps = 69/1439 (5%) Strand=Plus/Plus Query 342 AAATTATGGAGGAGATTCGGTTATCGCCGCTGAGAC-AGACAAG-TGTTAAGTCTTCACT 399 ||| |||||| || ||||| |||| ||| ||| || || || | ||||||||||| | Sbjct 16 AAACTATGGAAGATCTTCGGCTATCACCGTTGAAACTAG-GTAGCT-TTAAGTCTTCATT 73 Query 400 GTCAGGGAGGTCTACTCCAAGGGG-T-A-C-AC--CT---AGAGTGTATTCTGGTAGGAC 450 |||||||||||||||||||||||| | | | || || |||||| |||| || ||||| Sbjct 74 GTCAGGGAGGTCTACTCCAAGGGGTTCACCTACATCTAGGAGAGTGCATTCAGGCAGGAC 133 Query 451 TCCGCGT--AGAGGTC-ATGGTGGAGGAGGAGCGT-TTCAGTGGTTTC-GTAGTAGCCGG 505 ||| ||| ||||| | | ||| | || ||||| | |||||||| ||| | |||| |||| Sbjct 134 TCCACGTAGAGAGGGCAAAGGTAGTGGTGGAGC-TGTTCAGTGG-TTCAGAAGTAACCGG 191 Query 506 TTGGTTTATTGGCTGCTTTTGATTACGCTTTGGACGTATCTTGGATTTTATGTTCAGTCT 565 || | |||||| | || |||||||| |||||||| ||||||||||||||||||||||| Sbjct 192 CTGCTATATTGGTTACTGTTGATTACCCTTTGGACATATCTTGGATTTTATGTTCAGTCC 251 Query 566 AGGTGGGCACATGATAATGA-AAGCAAAGTTGAGTTTTTACGGTTTGGAGGCAGACCGAG 624 || |||||||||||| |||| || ||||||||||| |||||||||||||||| || ||| Sbjct 252 AGATGGGCACATGATGATGATAA-TAAAGTTGAGTTCTTACGGTTTGGAGGCAAACTGAG 310 Query 625 A-AAGGATGAGTTATATATGGAGAAGATTAAAGGACTGGATGT-TGTTGCTAATGAGAAT 682 | || |||| || || ||||| ||| |||| |||| ||| | ||||||||||||||| Sbjct 311 AGAA-GATGTTTTGCATGTGGAGCAGAATAAACGACTTGAT-TCAGTTGCTAATGAGAAT 368 Query 683 TCTGAGGCTTTGGTTA-ATATTACTGGTAAAGATGATG-CT-GGT-TCGAATAAGAGGAC 738 ||| | ||| | | || ||| ||| || || | | | ||| | |||||||||| Sbjct 369 TCTCATGCTCTAG-TAGATACTACCAATATAG-T-CCGTATAGGTGT-AAATAAGAGGAT 424 Query 739 GGATGTTAGTCTGATCAAGAAAGATGATGGGGTTTCTCGACGGAGCTTGAGTTCCAAGCA 798 | |||| | | || ||||||||| |||| |||| | | |||||||| ||| || | Sbjct 425 GCATGTAACTTTGGCCAAGAAAGAGGATGACACATCTCAAAGAAGCTTGAGCTCC-AGGA 483 Query 799 -GAAGACGAGAAAAACT-GTCCGGACTTCTCGTAGTAAGATCCGT-GTTAAGCAGAAGGT 855 || ||| |||||| || || || | ||| |||| || ||| | | | |||||||||||| Sbjct 484 GGAGGACCAGAAAAGCTAGT-CGTAGTTCACGTACTAGGATTCATAG-TAAGCAGAAGGT 541 Query 856 GATTAAAGAGGT-ACTTGAGACTAAGGATTTGGATGATGAGCAAGATCCACAACTTCCAT 914 || ||| | || | | ||||||||||| || | |||||||||| || | |||||||| Sbjct 542 GA-GAAA-A-GTGA-TGGAGACTAAGGACTT-G--GATGAGCAAGGTCAAGAACTTCCAA 594 Query 915 TGACAAATGCTACTTATGGTAAGCTTCTTGGTCCCTTTGGATCACTAGAGGATAAAGTTC 974 ||||||| ||| || |||||| || ||||||| ||||||||||| ||||||| ||||| Sbjct 595 ACACAAATGTTACCTACGGTAAGATTTTTGGTCCTTTTGGATCACTGGAGGATAGAGTTC 654 Query 975 TTGAATGGAGCCCGC-ATAGAAGATCTGGGACTTGCGACAGGAAATCAGATTTTAAACGC 1033 |||||||||| |||| | || |||| ||||| || |||||||||||||| || ||||| Sbjct 655 TTGAATGGAGTCCGCAAAAG-CGATCAGGGACCTGTGACAGGAAATCAGACTTCAAACGT 713 Query 1034 CTTGTTTGGTCAAGGAGATTCGTCCTGCTTTTCCACGAGCTATCAATGACTGGTGCTCCA 1093 ||||||||||| || ||||||||||| |||||||| || ||||| ||||||||||||||| Sbjct 714 CTTGTTTGGTCTAGAAGATTCGTCCTACTTTTCCATGAACTATCGATGACTGGTGCTCCA 773 Query 1094 ATTTCTATGATGGAGCTGGCTTCAGAGCTTTTGAGCTGTGGTGCAACAGTCTCTGCAGTA 1153 ||||| ||||||||| ||||||| |||||||||||||||||||||||||| | ||||||| Sbjct 774 ATTTCAATGATGGAGTTGGCTTCCGAGCTTTTGAGCTGTGGTGCAACAGTATATGCAGTA 833 Query 1154 GTTCTTAGCAGGAGAGGTGGATTGA-TGCAAGAGCTCAGTAGGAGAAGGATCAAAGTTGT 1212 || || ||||| || |||||||| | |||||||||||| ||||||||||||||||| || Sbjct 834 GTCCTGAGCAGAAGGGGTGGATT-ATTGCAAGAGCTCACAAGGAGAAGGATCAAAGTGGT 892 Query 1213 TGAAGACAAAGGAGAACTCAGCTTCAAGACTGCCATGAAAGCAGAT-TTGATCATCGCAG 1271 ||||||||||||||||||||||||||| |||||||||||||||||| ||| |||| |||| Sbjct 893 TGAAGACAAAGGAGAACTCAGCTTCAAAACTGCCATGAAAGCAGATCTTG-TCATTGCAG 951 Query 1272 GATCAGCAGTGTGTACCTCATGGATAGATCAATACATGAATCATCATCCAGCTGGTGGAA 1331 |||||||||||||| | ||||||||||||||||||||| |||| |||||||||||||||| Sbjct 952 GATCAGCAGTGTGTGCTTCATGGATAGATCAATACATGGATCACCATCCAGCTGGTGGAA 1011 Query 1332 GTCAAATAGCTTGGTGGATAATGGAGAATCGACGAGAATACTTTGATCGAGCGAAACCAG 1391 ||||||| ||||||||| | |||||||| || ||||| |||||||||||||||||||| | Sbjct 1012 GTCAAATCGCTTGGTGGGTGATGGAGAACCGGCGAGAGTACTTTGATCGAGCGAAACCTG 1071 Query 1392 TTCTTGACCGAGTGAAAATGCTGA-TTTTCTTATCTGAA-TCACAGAGCAGACAATGGTT 1449 | ||||||||||||||| |||| | ||||| |||||||| | ||||||| ||||||| | Sbjct 1072 TACTTGACCGAGTGAAACTGCTAATTTTTC-TATCTGAAGT-TCAGAGCAAACAATGGAT 1129 Query 1450 AACATGGTGCGAGGAGGAGCATATAAAGCTTAGATCACAACCAGTGATTGTTCCACTATC 1509 ||||||||| || ||||| |||||||||||||| || || || || |||||||| || || Sbjct 1130 AACATGGTGTGAAGAGGACCATATAAAGCTTAGGTCTCAGCCGGTTATTGTTCCGCTGTC 1189 Query 1510 TGTTAATGATGAGTTAGCTTTTGTAGCGGGGA-TTCCTTCTTCACTCAACACACCAACAC 1568 ||||||||||||||||||||||| || |||| || | |||||||| || || || |||| Sbjct 1190 CGTTAATGATGAGTTAGCTTTTGTTGCTGGGATTTAC-TCTTCACTAAATACTCCGACAC 1248 Query 1569 TTTCACC-AGAGAAAATGAGGGTGAAGAGAC-AAATATTACGCGAATCAGTGAGAACAGA 1626 | | || ||||| |||| || ||| |||| ||| || || |||||||| ||||| || Sbjct 1249 TAAC-CCAAGAGATGATGAAGGAGAAAAGACAAAAGCTT-CGTGAATCAGTCAGAACGGA 1306 Query 1627 GTTAGGAATAACAGATTCA-GATATGCTTGTGATGTCTCTTAGCAGCATAAACCCAACAA 1685 ||| || | ||||| | | |||||||||||||||||||||||||||||||| ||| || Sbjct 1307 GTTCGGTTTGACAGA-TAAGGATATGCTTGTGATGTCTCTTAGCAGCATAAATCCAGGAA 1365 Query 1686 AGGGACAACTTCTTCTCCTTGAATCTATTGCCTTGGCTCTTTCTGAGAGAGGACAAGAA 1744 |||||||||||||||||||||||||| | |||||||| || ||||||| ||||||| Sbjct 1366 AGGGACAACTTCTTCTCCTTGAATCTGTCGCCTTGGCACTG---GAGAGAGAACAAGAA 1421 Score = 425 bits (230), Expect = 6e-118 Identities = 405/491 (82%), Gaps = 6/491 (1%) Strand=Plus/Plus Query 1872 AGAAGCAAGAACTTAAAGTTCTT-TTAGGATCCG-TGGGTTCAAAGAGCAACAAAGTTGG 1929 |||| ||||| |||||| ||||| || ||||| | |||| || |||||||||||||||| Sbjct 1624 AGAAACAAGACCTTAAACTTCTTCTT-GGATCAGTTGGG-TCCAAGAGCAACAAAGTTGC 1681 Query 1930 ATACGTTAAAGAGATGTTAAGCTTCTTGTCAAACAGCGGAAACTTATCTAAGTCGGTAAT 1989 ||||||||| || ||||| |||||||||||||||| ||||||||||| || ||||| | Sbjct 1682 ATACGTTAAGGAAATGTTGAGCTTCTTGTCAAACAATGGAAACTTATCGAACTCGGTTCT 1741 Query 1990 GTGGACTCCTGCAACAACCCGTGTTGCTTCATTATACTCTGCAGCAGATGTCTACGTTAC 2049 ||||||||| || || || |||||||| ||||||||||||||||||||||||||||| || Sbjct 1742 GTGGACTCCAGCGACCACTCGTGTTGCCTCATTATACTCTGCAGCAGATGTCTACGTCAC 1801 Query 2050 AAACTCCCAGGGAGTTGGTGAAACATTTGGTAGAGTGACAATCGAAGCAATGGCTTATGG 2109 ||||||||||||| ||||||||||||| || |||||||| |||||||||||||||||||| Sbjct 1802 AAACTCCCAGGGAATTGGTGAAACATTCGGGAGAGTGACTATCGAAGCAATGGCTTATGG 1861 Query 2110 ACTTGCAGTGGTGGGAACAGATGCAGGAGGAACCAAAGAGATGGTTCAACACAACATGAC 2169 ||| | || | |||||||| || |||||||| |||||||| || | ||||| | || Sbjct 1862 TCTTCCGGTACTTGGAACAGACGCTGGAGGAACAAAAGAGATAGTGGAGCACAATGTCAC 1921 Query 2170 TGGTCTACTTCACTCAATGGGGAGATCCGGTAACAAAGAATTAGCTCATAATCTCTTGTA 2229 || ||||||||| | ||||||| | ||||||||| |||||||| |||||||||| Sbjct 1922 AGGGCTACTTCACCCTGTGGGGAGGGCAGGTAACAAATTTTTAGCTCAGAATCTCTTGTT 1981 Query 2230 TCTACTTAGGAATCCAGACGAGA-GGCTACGATTGGGGAGTGAAGGACGCAAAATGGTTG 2288 ||| ||||| || || | | | | || ||| | | || || ||||||| |||| |||| Sbjct 1982 TCTTCTTAGAAACCC-GTCTACAAGGTTACAACTAGGTAGCCAAGGACGTGAAATCGTTG 2040 Query 2289 AGAAAATGTACATGAAGCAACATATGTACAAGCGATTCGTCGATGTTCTGGTCAAATGCA 2348 |||| |||||||||||||| || | ||||||| |||| || |||||||| |||||||| | Sbjct 2041 AGAAGATGTACATGAAGCAGCACACGTACAAGAGATTTGTGGATGTTCTAGTCAAATGTA 2100 Query 2349 TGAGACCTTAA 2359 ||||||| ||| Sbjct 2101 TGAGACCCTAA 2111 > Ahg923318 jgi|Araly1|923318|scaffold_104599.1 Length=257 Score = 183 bits (99), Expect = 4e-45 Identities = 120/130 (92%), Gaps = 2/130 (2%) Strand=Plus/Plus Query 2251 GAGGCTACGATTGGGGAGTGAAGGACGCAAAATGGTTGAGAAAATGTACATGAAGCAACA 2310 |||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||| Sbjct 129 GAGGCTACGATTAGGGAGTGAAGGACGCAAAATGGTTGAGAAAATGTACATGAAGCAACA 188 Query 2311 TATGTACAAGCGATTCGTCGATGTTCTGGTCAAATGCATGAGACCTTAAAAAAGCCCTTT 2370 ||||||||| |||||||| |||||||| |||||||||||||||| ||||||| | ||| Sbjct 189 TATGTACAATCGATTCGTTGATGTTCTTATCAAATGCATGAGACCATAAAAAA-CACTTG 247 Query 2371 G-TTTACCAA 2379 | |||||||| Sbjct 248 GATTTACCAA 257 Score = 163 bits (88), Expect = 5e-39 Identities = 113/125 (90%), Gaps = 2/125 (2%) Strand=Plus/Plus Query 2075 TTTGGTAGAGTGACAATCGAAGCAATGGCTTATGGACTTGCAGTGGTGGGAACAGATGCA 2134 ||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct 1 TTTGGGAGAGTGACAATCGAAGCAATGGCTTATGGACTTGCAGTGGTGGGAACAGATGCA 60 Query 2135 GGAGGAACCAAAGAGATGGTTCAACACAACATGACTGGTCTACTTCACTCAATGGGGA-G 2193 |||||| | |||||||| || || ||||| |||| ||| |||||||||||||||| | | Sbjct 61 GGAGGAGCAAAAGAGATCGTGCAGCACAATGTGACCGGTTTACTTCACTCAATGGG-ACG 119 Query 2194 ATCCG 2198 ||||| Sbjct 120 ATCCG 124 Lambda K H 1.33 0.621 1.12 Gapped Lambda K H 1.28 0.460 0.850 Effective search space used: 98463283325 Database: halleri_transcript_ahg.fa Posted date: Sep 25, 2014 2:02 AM Number of letters in database: 38,939,717 Number of sequences in database: 32,672 Matrix: blastn matrix 1 -2 Gap Penalties: Existence: 0, Extension: 2.5