BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: halleri_transcript_ahg.fa
32,672 sequences; 38,939,717 total letters
Query= AT1G52420.1
Length=2611
Score E
Sequences producing significant alignments: (Bits) Value
Ahg474368 jgi|Araly1|474368|fgenesh2_kg.1__4322__AT1G52420.1 3659 0.0
Ahg929405 jgi|Araly1|929405|scaffold_301862.1 1136 0.0
Ahg923318 jgi|Araly1|923318|scaffold_104599.1 183 4e-45
> Ahg474368 jgi|Araly1|474368|fgenesh2_kg.1__4322__AT1G52420.1
Length=2529
Score = 3659 bits (1981), Expect = 0.0
Identities = 2239/2362 (95%), Gaps = 24/2362 (1%)
Strand=Plus/Plus
Query 15 GAAGCTGAAGCAGAAGAAGAAGCAGActctctctctctctTTGCTTCAGCTTTTGCGCAG 74
||||||||||| ||||||||||||||||||||||||| |||||||||||||| |||
Sbjct 7 GAAGCTGAAGC---TGAAGAAGCAGACTCTCTCTCTCTCTCTGCTTCAGCTTTTGTTCAG 63
Query 75 CTCTGATCTCTGAAGAAGACGAAGACTTAATCT-ATACAAAAATTGCTGCGAATTCGCGT 133
|||||||||||||||||||||||||||| ||| || || | |||||||| |||||||||
Sbjct 64 CTCTGATCTCTGAAGAAGACGAAGACTTTTTCTAAT-CATAGATTGCTGCAAATTCGCGT 122
Query 134 CAATTTAGCTGCGCTTTCTCGATCTTTTGTACTTCGGAAGCTGCAACGTTGTAGAATCGG 193
||||||||||||| | | || ||||||||||||||| ||||||| || |||||
Sbjct 123 CAATTTAGCTGCG---T-T---TC----GTACTTCGGAAGCTGAAACGTTGGAGCATCGG 171
Query 194 CGGATCCAAGTCGGTAATTACTCAGCTTCTGGTTGTGATGTTAATGTGAGCTGCCCAATT 253
||||||||||||||||||||||||||||||||||||| |||||||||||||||| |||||
Sbjct 172 CGGATCCAAGTCGGTAATTACTCAGCTTCTGGTTGTGGTGTTAATGTGAGCTGCTCAATT 231
Query 254 TTGTGATGGTGGATTGAAGCGGTTGAATTTTTCTACTTCAGATTGCTTTTGTGTTTGATA 313
||||| | ||||||||||||||||||||||| ||| ||| ||||||||||||||||||||
Sbjct 232 TTGTGTTCGTGGATTGAAGCGGTTGAATTTTACTAGTTCCGATTGCTTTTGTGTTTGATA 291
Query 314 TGTTACTCATAATGAGATTATAG-CCTTGAAATTATGGAGGAGATTCGGTTATCGCCGCT 372
|| | || ||| ||||||||||| | ||||||| ||||||||||||||||||||||||||
Sbjct 292 TGATGCTTATAGTGAGATTATAGTCATTGAAATCATGGAGGAGATTCGGTTATCGCCGCT 351
Query 373 GAGACAGACAAGTGTTAAGTCTTCACTGTCAGGGAGGTCTACTCCAAGGGGTACACCTAG 432
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 352 GAGACAGACAAGTGTTAAGTCTTCACTGTCAGGGAGGTCTACTCCAAGGGGTACACCTAG 411
Query 433 AGTGTATTCTGGTAGGACTCCGCGTAGAGGTCATGGTGGAGGAGGAGCGTTTCAGTGGTT 492
| || |||||||||||||||| ||||||||||||| |||||||||||| ||||||| |||
Sbjct 412 ATTGCATTCTGGTAGGACTCCTCGTAGAGGTCATGTTGGAGGAGGAGCATTTCAGTTGTT 471
Query 493 TCGTAGTAGCCGGTTGGTTTATTGGCTGCTTTTGATTACGCTTTGGACGTATCTTGGATT 552
||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||
Sbjct 472 TCGTAGTAGCCGGTTGGTTTATTGGCTGCTTTTGATTACTCTTTGGACGTATCTTGGATT 531
Query 553 TTATGTTCAGTCTAGGTGGGCACATGATAATGAAAGCAAAGTTGAGTTTTTACGGTTTGG 612
|||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||
Sbjct 532 TTATGTTCAGTCTAGGTGGGCACATGATAATGAAAGTAAAGTTGAGTTTTTACGGTTTGG 591
Query 613 AGGCAGACCGAGAAAGGATGAGTTATATATGGAGAAGATTAAAGGACTGGATGTTGTTGC 672
|||||||||||||||||||| |||||| |||||||||| |||||| |||||| ||||||
Sbjct 592 AGGCAGACCGAGAAAGGATGTTTTATATGTGGAGAAGATCAAAGGAATGGATGCTGTTGC 651
Query 673 TAATGAGAATTCTGAGGCTTTGGTTAATATTACTGGTAAAGATGATGCTGGTTC-GAATA 731
|||||||||||||||||||||||| |||||||||||||||||||||||||| || || ||
Sbjct 652 TAATGAGAATTCTGAGGCTTTGGTAAATATTACTGGTAAAGATGATGCTGG-TCTGAGTA 710
Query 732 AGAGGACGGATGTTAGTCTGATCAAGAAAGATGATGGGGTTTCTCGACGGAGCTTGAGTT 791
||||||||||||||||||| ||||||||||||||||||| ||||||||||||||||||||
Sbjct 711 AGAGGACGGATGTTAGTCTAATCAAGAAAGATGATGGGGCTTCTCGACGGAGCTTGAGTT 770
Query 792 CCAAGCAGAAGACGAGAAAAACTGTCCGGACTTCTCGTAGTAAGATCCGTGTTAAGCAGA 851
||||||||||||| |||||||||||||||| ||| ||||||||| | |||| ||||||||
Sbjct 771 CCAAGCAGAAGACTAGAAAAACTGTCCGGAGTTCACGTAGTAAGGTACGTGGTAAGCAGA 830
Query 852 AGGTGATTAAAGAGGTACTTGAGACTAAGGATTTGGATGATGAGCAAGATCCACAACTTC 911
||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||
Sbjct 831 AGGTGATTAAAGAGGTACTTGAGACTAAGGATTTGGATGCTGAGCAAGATCCACAACTTC 890
Query 912 CATTGACAAATGCTACTTATGGTAAGCTTCTTGGTCCCTTTGGATCACTAGAGGATAAAG 971
||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||
Sbjct 891 CATTGACAAATGCTACTTATGGTAAGCTTCTTGGTCCTTTTGGATCACTAGAGGATAAAG 950
Query 972 TTCTTGAATGGAGCCCGCATAGAAGATCTGGGACTTGCGACAGGAAATCAGATTTTAAAC 1031
|||||||||||||||| |||||| ||||||||||||| ||| ||||||||||||||||||
Sbjct 951 TTCTTGAATGGAGCCCACATAGACGATCTGGGACTTGTGACCGGAAATCAGATTTTAAAC 1010
Query 1032 GCCTTGTTTGGTCAAGGAGATTCGTCCTGCTTTTCCACGAGCTATCAATGACTGGTGCTC 1091
||||||||||||| ||||||||||||||||||||||| |||||||||||||| || ||||
Sbjct 1011 GCCTTGTTTGGTCGAGGAGATTCGTCCTGCTTTTCCATGAGCTATCAATGACAGGCGCTC 1070
Query 1092 CAATTTCTATGATGGAGCTGGCTTCAGAGCTTTTGAGCTGTGGTGCAACAGTCTCTGCAG 1151
||||||| ||||||||||||||||| ||||||||||||||||||||||||||||||||||
Sbjct 1071 CAATTTCAATGATGGAGCTGGCTTCGGAGCTTTTGAGCTGTGGTGCAACAGTCTCTGCAG 1130
Query 1152 TAGTTCTTAGCAGGAGAGGTGGATTGATGCAAGAGCTCAGTAGGAGAAGGATCAAAGTTG 1211
||||||| ||||||||||||||||||||||||||||||| ||||||||||||||||||||
Sbjct 1131 TAGTTCTCAGCAGGAGAGGTGGATTGATGCAAGAGCTCACTAGGAGAAGGATCAAAGTTG 1190
Query 1212 TTGAAGACAAAGGAGAACTCAGCTTCAAGACTGCCATGAAAGCAGATTTGATCATCGCAG 1271
|||||||||||||||||||||||||||||||| ||||||||||||||||| |||||||||
Sbjct 1191 TTGAAGACAAAGGAGAACTCAGCTTCAAGACTTCCATGAAAGCAGATTTGGTCATCGCAG 1250
Query 1272 GATCAGCAGTGTGTACCTCATGGATAGATCAATACATGAATCATCATCCAGCTGGTGGAA 1331
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1251 GATCAGCAGTGTGTACCTCATGGATAGATCAATACATGAATCATCATCCAGCTGGTGGAA 1310
Query 1332 GTCAAATAGCTTGGTGGATAATGGAGAATCGACGAGAATACTTTGATCGAGCGAAACCAG 1391
||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1311 GTCAAATCGCTTGGTGGATAATGGAGAATCGACGAGAATACTTTGATCGAGCGAAACCAG 1370
Query 1392 TTCTTGACCGA-GTGAAAATGCTGATTTTCTTATCTGAATCACAGAGCAGACAATGGTTA 1450
||||||||| | ||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1371 TTCTTGACC-ATGTGAAAATGCTGATTTTCTTATCTGAATCACAGAGCAGACAATGGTTA 1429
Query 1451 ACATGGTGCGAGGAGGAGCATATAAAGCTTAGATCACAACCAGTGATTGTTCCACTATCT 1510
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1430 ACATGGTGCGAGGAGGAGCATATAAAGCTTAGATCACAACCAGTGATTGTTCCACTATCT 1489
Query 1511 GTTAATGATGAGTTAGCTTTTGTAGCGGGGATTCCTTCTTCACTCAACACACCAACACTT 1570
|||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||
Sbjct 1490 GTTAATGATGAGTTAGCTTTTGTAGCTGGGATTCCTTCTTCACTCAACACACCAACACTT 1549
Query 1571 TCACCAGAGAAAATGAGGGTGAAGAGACAAATATTACGCGAATCAGTGAGAACAGAGTTA 1630
||||||||||||||||||| |||||||||||||||||||||||||||||||| ||||||
Sbjct 1550 TCACCAGAGAAAATGAGGGAGAAGAGACAAATATTACGCGAATCAGTGAGAATGGAGTTA 1609
Query 1631 GGAATAACAGATTCAGATATGCTTGTGATGTCTCTTAGCAGCATAAACCCAACAAAGGGA 1690
||| |||||||| ||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1610 GGATTAACAGATGCAGATATGCTTGTGATGTCTCTTAGCAGCATAAACCCAACAAAGGGG 1669
Query 1691 CAACTTCTTCTCCTTGAATCTATTGCCTTGGCTCTTTCTGAGAGAGGACAAGAATCTCAA 1750
||||||||||||||||||||||| | |||||||||||||||||||||| |||||||||||
Sbjct 1670 CAACTTCTTCTCCTTGAATCTATCGTCTTGGCTCTTTCTGAGAGAGGAAAAGAATCTCAA 1729
Query 1751 AGGAATCACAAGGGGATCATTAGGAAAGAAAAGGTTAGTCTCTCCAGCAAACATCGTTTA 1810
|| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1730 AGAAATCACAAGGGGATCATTAGGAAAGAAAAGGTTAGTCTCTCCAGCAAACATCGTTTA 1789
Query 1811 AGAGGTTCATCACGACAGATGAAAAGTGTTTCTCTCACACTTGACAATGGCTTAAGAAGA 1870
||||||||||||||||||||||||||||||||||||||||||||||||| | | |||||
Sbjct 1790 AGAGGTTCATCACGACAGATGAAAAGTGTTTCTCTCACACTTGACAATGCCGTGAGAAGC 1849
Query 1871 GAGAAGCAAGAACTTAAAGTTCTTTTAGGATCCGTGGGTTCAAAGAGCAACAAAGTTGGA 1930
|||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||
Sbjct 1850 GAGAAGCAAGAACTTAAAGTTCTTTTAGGATCAGTGGGTTCAAAGAGCAACAAAGTTGGA 1909
Query 1931 TACGTTAAAGAGATGTTAAGCTTCTTGTCAAACAGCGGAAACTTATCTAAGTCGGTAATG 1990
|| ||||||||||||||||||||||| ||||| | |||||||||||||||||| ||||||
Sbjct 1910 TATGTTAAAGAGATGTTAAGCTTCTTATCAAAAAACGGAAACTTATCTAAGTCAGTAATG 1969
Query 1991 TGGACTCCTGCAACAACCCGTGTTGCTTCATTATACTCTGCAGCAGATGTCTACGTTACA 2050
|||||||| |||||||| ||||||||||||||||||||||||||||||||||||||||||
Sbjct 1970 TGGACTCCCGCAACAACTCGTGTTGCTTCATTATACTCTGCAGCAGATGTCTACGTTACA 2029
Query 2051 AACTCCCAGGGAGTTGGTGAAACATTTGGTAGAGTGACAATCGAAGCAATGGCTTATGGA 2110
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 2030 AACTCCCAGGGAGTTGGTGAAACATTTGGTAGAGTGACAATCGAAGCAATGGCTTATGGA 2089
Query 2111 CTTGCAGTGGTGGGAACAGATGCAGGAGGAACCAAAGAGATGGTTCAACACAACATGACT 2170
|||||||| ||||||||||| ||||||||||||||||||||||||||||||||| |||||
Sbjct 2090 CTTGCAGTAGTGGGAACAGACGCAGGAGGAACCAAAGAGATGGTTCAACACAACGTGACT 2149
Query 2171 GGTCTACTTCACTCAATGGGGA-GATCCGGTAACAAAGAATTAGCTCATAATCTCTTGTA 2229
|||||||||||||||||||| | |||||||||||||||||||||||||||||||||||||
Sbjct 2150 GGTCTACTTCACTCAATGGG-ACGATCCGGTAACAAAGAATTAGCTCATAATCTCTTGTA 2208
Query 2230 TCTACTTAGGAATCCAGACGAGAGGCTACGATTGGGGAGTGAAGGACGCAAAATGGTTGA 2289
||||||||||||| |||||| ||||||||||||||| |||||||||||||||||||||||
Sbjct 2209 TCTACTTAGGAATGCAGACGCGAGGCTACGATTGGGAAGTGAAGGACGCAAAATGGTTGA 2268
Query 2290 GAAAATGTACATGAAGCAACATATGTACAAGCGATTCGTCGATGTTCTGGTCAAATGCAT 2349
|||||||||||||||||||||||||||||||||||||||||||||||| |||||||| ||
Sbjct 2269 GAAAATGTACATGAAGCAACATATGTACAAGCGATTCGTCGATGTTCTAGTCAAATGTAT 2328
Query 2350 GAGACCTTAAAAAAGCCCTTTG 2371
|||||| ||||||| | |||||
Sbjct 2329 GAGACCATAAAAAA-CACTTTG 2349
> Ahg929405 jgi|Araly1|929405|scaffold_301862.1
Length=2131
Score = 1136 bits (615), Expect = 0.0
Identities = 1176/1439 (82%), Gaps = 69/1439 (5%)
Strand=Plus/Plus
Query 342 AAATTATGGAGGAGATTCGGTTATCGCCGCTGAGAC-AGACAAG-TGTTAAGTCTTCACT 399
||| |||||| || ||||| |||| ||| ||| || || || | ||||||||||| |
Sbjct 16 AAACTATGGAAGATCTTCGGCTATCACCGTTGAAACTAG-GTAGCT-TTAAGTCTTCATT 73
Query 400 GTCAGGGAGGTCTACTCCAAGGGG-T-A-C-AC--CT---AGAGTGTATTCTGGTAGGAC 450
|||||||||||||||||||||||| | | | || || |||||| |||| || |||||
Sbjct 74 GTCAGGGAGGTCTACTCCAAGGGGTTCACCTACATCTAGGAGAGTGCATTCAGGCAGGAC 133
Query 451 TCCGCGT--AGAGGTC-ATGGTGGAGGAGGAGCGT-TTCAGTGGTTTC-GTAGTAGCCGG 505
||| ||| ||||| | | ||| | || ||||| | |||||||| ||| | |||| ||||
Sbjct 134 TCCACGTAGAGAGGGCAAAGGTAGTGGTGGAGC-TGTTCAGTGG-TTCAGAAGTAACCGG 191
Query 506 TTGGTTTATTGGCTGCTTTTGATTACGCTTTGGACGTATCTTGGATTTTATGTTCAGTCT 565
|| | |||||| | || |||||||| |||||||| |||||||||||||||||||||||
Sbjct 192 CTGCTATATTGGTTACTGTTGATTACCCTTTGGACATATCTTGGATTTTATGTTCAGTCC 251
Query 566 AGGTGGGCACATGATAATGA-AAGCAAAGTTGAGTTTTTACGGTTTGGAGGCAGACCGAG 624
|| |||||||||||| |||| || ||||||||||| |||||||||||||||| || |||
Sbjct 252 AGATGGGCACATGATGATGATAA-TAAAGTTGAGTTCTTACGGTTTGGAGGCAAACTGAG 310
Query 625 A-AAGGATGAGTTATATATGGAGAAGATTAAAGGACTGGATGT-TGTTGCTAATGAGAAT 682
| || |||| || || ||||| ||| |||| |||| ||| | |||||||||||||||
Sbjct 311 AGAA-GATGTTTTGCATGTGGAGCAGAATAAACGACTTGAT-TCAGTTGCTAATGAGAAT 368
Query 683 TCTGAGGCTTTGGTTA-ATATTACTGGTAAAGATGATG-CT-GGT-TCGAATAAGAGGAC 738
||| | ||| | | || ||| ||| || || | | | ||| | ||||||||||
Sbjct 369 TCTCATGCTCTAG-TAGATACTACCAATATAG-T-CCGTATAGGTGT-AAATAAGAGGAT 424
Query 739 GGATGTTAGTCTGATCAAGAAAGATGATGGGGTTTCTCGACGGAGCTTGAGTTCCAAGCA 798
| |||| | | || ||||||||| |||| |||| | | |||||||| ||| || |
Sbjct 425 GCATGTAACTTTGGCCAAGAAAGAGGATGACACATCTCAAAGAAGCTTGAGCTCC-AGGA 483
Query 799 -GAAGACGAGAAAAACT-GTCCGGACTTCTCGTAGTAAGATCCGT-GTTAAGCAGAAGGT 855
|| ||| |||||| || || || | ||| |||| || ||| | | | ||||||||||||
Sbjct 484 GGAGGACCAGAAAAGCTAGT-CGTAGTTCACGTACTAGGATTCATAG-TAAGCAGAAGGT 541
Query 856 GATTAAAGAGGT-ACTTGAGACTAAGGATTTGGATGATGAGCAAGATCCACAACTTCCAT 914
|| ||| | || | | ||||||||||| || | |||||||||| || | ||||||||
Sbjct 542 GA-GAAA-A-GTGA-TGGAGACTAAGGACTT-G--GATGAGCAAGGTCAAGAACTTCCAA 594
Query 915 TGACAAATGCTACTTATGGTAAGCTTCTTGGTCCCTTTGGATCACTAGAGGATAAAGTTC 974
||||||| ||| || |||||| || ||||||| ||||||||||| ||||||| |||||
Sbjct 595 ACACAAATGTTACCTACGGTAAGATTTTTGGTCCTTTTGGATCACTGGAGGATAGAGTTC 654
Query 975 TTGAATGGAGCCCGC-ATAGAAGATCTGGGACTTGCGACAGGAAATCAGATTTTAAACGC 1033
|||||||||| |||| | || |||| ||||| || |||||||||||||| || |||||
Sbjct 655 TTGAATGGAGTCCGCAAAAG-CGATCAGGGACCTGTGACAGGAAATCAGACTTCAAACGT 713
Query 1034 CTTGTTTGGTCAAGGAGATTCGTCCTGCTTTTCCACGAGCTATCAATGACTGGTGCTCCA 1093
||||||||||| || ||||||||||| |||||||| || ||||| |||||||||||||||
Sbjct 714 CTTGTTTGGTCTAGAAGATTCGTCCTACTTTTCCATGAACTATCGATGACTGGTGCTCCA 773
Query 1094 ATTTCTATGATGGAGCTGGCTTCAGAGCTTTTGAGCTGTGGTGCAACAGTCTCTGCAGTA 1153
||||| ||||||||| ||||||| |||||||||||||||||||||||||| | |||||||
Sbjct 774 ATTTCAATGATGGAGTTGGCTTCCGAGCTTTTGAGCTGTGGTGCAACAGTATATGCAGTA 833
Query 1154 GTTCTTAGCAGGAGAGGTGGATTGA-TGCAAGAGCTCAGTAGGAGAAGGATCAAAGTTGT 1212
|| || ||||| || |||||||| | |||||||||||| ||||||||||||||||| ||
Sbjct 834 GTCCTGAGCAGAAGGGGTGGATT-ATTGCAAGAGCTCACAAGGAGAAGGATCAAAGTGGT 892
Query 1213 TGAAGACAAAGGAGAACTCAGCTTCAAGACTGCCATGAAAGCAGAT-TTGATCATCGCAG 1271
||||||||||||||||||||||||||| |||||||||||||||||| ||| |||| ||||
Sbjct 893 TGAAGACAAAGGAGAACTCAGCTTCAAAACTGCCATGAAAGCAGATCTTG-TCATTGCAG 951
Query 1272 GATCAGCAGTGTGTACCTCATGGATAGATCAATACATGAATCATCATCCAGCTGGTGGAA 1331
|||||||||||||| | ||||||||||||||||||||| |||| ||||||||||||||||
Sbjct 952 GATCAGCAGTGTGTGCTTCATGGATAGATCAATACATGGATCACCATCCAGCTGGTGGAA 1011
Query 1332 GTCAAATAGCTTGGTGGATAATGGAGAATCGACGAGAATACTTTGATCGAGCGAAACCAG 1391
||||||| ||||||||| | |||||||| || ||||| |||||||||||||||||||| |
Sbjct 1012 GTCAAATCGCTTGGTGGGTGATGGAGAACCGGCGAGAGTACTTTGATCGAGCGAAACCTG 1071
Query 1392 TTCTTGACCGAGTGAAAATGCTGA-TTTTCTTATCTGAA-TCACAGAGCAGACAATGGTT 1449
| ||||||||||||||| |||| | ||||| |||||||| | ||||||| ||||||| |
Sbjct 1072 TACTTGACCGAGTGAAACTGCTAATTTTTC-TATCTGAAGT-TCAGAGCAAACAATGGAT 1129
Query 1450 AACATGGTGCGAGGAGGAGCATATAAAGCTTAGATCACAACCAGTGATTGTTCCACTATC 1509
||||||||| || ||||| |||||||||||||| || || || || |||||||| || ||
Sbjct 1130 AACATGGTGTGAAGAGGACCATATAAAGCTTAGGTCTCAGCCGGTTATTGTTCCGCTGTC 1189
Query 1510 TGTTAATGATGAGTTAGCTTTTGTAGCGGGGA-TTCCTTCTTCACTCAACACACCAACAC 1568
||||||||||||||||||||||| || |||| || | |||||||| || || || ||||
Sbjct 1190 CGTTAATGATGAGTTAGCTTTTGTTGCTGGGATTTAC-TCTTCACTAAATACTCCGACAC 1248
Query 1569 TTTCACC-AGAGAAAATGAGGGTGAAGAGAC-AAATATTACGCGAATCAGTGAGAACAGA 1626
| | || ||||| |||| || ||| |||| ||| || || |||||||| ||||| ||
Sbjct 1249 TAAC-CCAAGAGATGATGAAGGAGAAAAGACAAAAGCTT-CGTGAATCAGTCAGAACGGA 1306
Query 1627 GTTAGGAATAACAGATTCA-GATATGCTTGTGATGTCTCTTAGCAGCATAAACCCAACAA 1685
||| || | ||||| | | |||||||||||||||||||||||||||||||| ||| ||
Sbjct 1307 GTTCGGTTTGACAGA-TAAGGATATGCTTGTGATGTCTCTTAGCAGCATAAATCCAGGAA 1365
Query 1686 AGGGACAACTTCTTCTCCTTGAATCTATTGCCTTGGCTCTTTCTGAGAGAGGACAAGAA 1744
|||||||||||||||||||||||||| | |||||||| || ||||||| |||||||
Sbjct 1366 AGGGACAACTTCTTCTCCTTGAATCTGTCGCCTTGGCACTG---GAGAGAGAACAAGAA 1421
Score = 425 bits (230), Expect = 6e-118
Identities = 405/491 (82%), Gaps = 6/491 (1%)
Strand=Plus/Plus
Query 1872 AGAAGCAAGAACTTAAAGTTCTT-TTAGGATCCG-TGGGTTCAAAGAGCAACAAAGTTGG 1929
|||| ||||| |||||| ||||| || ||||| | |||| || ||||||||||||||||
Sbjct 1624 AGAAACAAGACCTTAAACTTCTTCTT-GGATCAGTTGGG-TCCAAGAGCAACAAAGTTGC 1681
Query 1930 ATACGTTAAAGAGATGTTAAGCTTCTTGTCAAACAGCGGAAACTTATCTAAGTCGGTAAT 1989
||||||||| || ||||| |||||||||||||||| ||||||||||| || ||||| |
Sbjct 1682 ATACGTTAAGGAAATGTTGAGCTTCTTGTCAAACAATGGAAACTTATCGAACTCGGTTCT 1741
Query 1990 GTGGACTCCTGCAACAACCCGTGTTGCTTCATTATACTCTGCAGCAGATGTCTACGTTAC 2049
||||||||| || || || |||||||| ||||||||||||||||||||||||||||| ||
Sbjct 1742 GTGGACTCCAGCGACCACTCGTGTTGCCTCATTATACTCTGCAGCAGATGTCTACGTCAC 1801
Query 2050 AAACTCCCAGGGAGTTGGTGAAACATTTGGTAGAGTGACAATCGAAGCAATGGCTTATGG 2109
||||||||||||| ||||||||||||| || |||||||| ||||||||||||||||||||
Sbjct 1802 AAACTCCCAGGGAATTGGTGAAACATTCGGGAGAGTGACTATCGAAGCAATGGCTTATGG 1861
Query 2110 ACTTGCAGTGGTGGGAACAGATGCAGGAGGAACCAAAGAGATGGTTCAACACAACATGAC 2169
||| | || | |||||||| || |||||||| |||||||| || | ||||| | ||
Sbjct 1862 TCTTCCGGTACTTGGAACAGACGCTGGAGGAACAAAAGAGATAGTGGAGCACAATGTCAC 1921
Query 2170 TGGTCTACTTCACTCAATGGGGAGATCCGGTAACAAAGAATTAGCTCATAATCTCTTGTA 2229
|| ||||||||| | ||||||| | ||||||||| |||||||| ||||||||||
Sbjct 1922 AGGGCTACTTCACCCTGTGGGGAGGGCAGGTAACAAATTTTTAGCTCAGAATCTCTTGTT 1981
Query 2230 TCTACTTAGGAATCCAGACGAGA-GGCTACGATTGGGGAGTGAAGGACGCAAAATGGTTG 2288
||| ||||| || || | | | | || ||| | | || || ||||||| |||| ||||
Sbjct 1982 TCTTCTTAGAAACCC-GTCTACAAGGTTACAACTAGGTAGCCAAGGACGTGAAATCGTTG 2040
Query 2289 AGAAAATGTACATGAAGCAACATATGTACAAGCGATTCGTCGATGTTCTGGTCAAATGCA 2348
|||| |||||||||||||| || | ||||||| |||| || |||||||| |||||||| |
Sbjct 2041 AGAAGATGTACATGAAGCAGCACACGTACAAGAGATTTGTGGATGTTCTAGTCAAATGTA 2100
Query 2349 TGAGACCTTAA 2359
||||||| |||
Sbjct 2101 TGAGACCCTAA 2111
> Ahg923318 jgi|Araly1|923318|scaffold_104599.1
Length=257
Score = 183 bits (99), Expect = 4e-45
Identities = 120/130 (92%), Gaps = 2/130 (2%)
Strand=Plus/Plus
Query 2251 GAGGCTACGATTGGGGAGTGAAGGACGCAAAATGGTTGAGAAAATGTACATGAAGCAACA 2310
|||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 129 GAGGCTACGATTAGGGAGTGAAGGACGCAAAATGGTTGAGAAAATGTACATGAAGCAACA 188
Query 2311 TATGTACAAGCGATTCGTCGATGTTCTGGTCAAATGCATGAGACCTTAAAAAAGCCCTTT 2370
||||||||| |||||||| |||||||| |||||||||||||||| ||||||| | |||
Sbjct 189 TATGTACAATCGATTCGTTGATGTTCTTATCAAATGCATGAGACCATAAAAAA-CACTTG 247
Query 2371 G-TTTACCAA 2379
| ||||||||
Sbjct 248 GATTTACCAA 257
Score = 163 bits (88), Expect = 5e-39
Identities = 113/125 (90%), Gaps = 2/125 (2%)
Strand=Plus/Plus
Query 2075 TTTGGTAGAGTGACAATCGAAGCAATGGCTTATGGACTTGCAGTGGTGGGAACAGATGCA 2134
||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1 TTTGGGAGAGTGACAATCGAAGCAATGGCTTATGGACTTGCAGTGGTGGGAACAGATGCA 60
Query 2135 GGAGGAACCAAAGAGATGGTTCAACACAACATGACTGGTCTACTTCACTCAATGGGGA-G 2193
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Sbjct 61 GGAGGAGCAAAAGAGATCGTGCAGCACAATGTGACCGGTTTACTTCACTCAATGGG-ACG 119
Query 2194 ATCCG 2198
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Sbjct 120 ATCCG 124
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 98463283325
Database: halleri_transcript_ahg.fa
Posted date: Sep 25, 2014 2:02 AM
Number of letters in database: 38,939,717
Number of sequences in database: 32,672
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5