BLASTN 2.2.26+


Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.



Database: halleri_transcript_ahg.fa
           32,672 sequences; 38,939,717 total letters



Query= AT1G52420.1

Length=2611
                                                                      Score     E
Sequences producing significant alignments:                          (Bits)  Value

  Ahg474368 jgi|Araly1|474368|fgenesh2_kg.1__4322__AT1G52420.1        3659    0.0  
  Ahg929405 jgi|Araly1|929405|scaffold_301862.1                       1136    0.0  
  Ahg923318 jgi|Araly1|923318|scaffold_104599.1                        183    4e-45


> Ahg474368 jgi|Araly1|474368|fgenesh2_kg.1__4322__AT1G52420.1
Length=2529

 Score = 3659 bits (1981),  Expect = 0.0
 Identities = 2239/2362 (95%), Gaps = 24/2362 (1%)
 Strand=Plus/Plus

Query  15    GAAGCTGAAGCAGAAGAAGAAGCAGActctctctctctctTTGCTTCAGCTTTTGCGCAG  74
             |||||||||||    ||||||||||||||||||||||||| ||||||||||||||  |||
Sbjct  7     GAAGCTGAAGC---TGAAGAAGCAGACTCTCTCTCTCTCTCTGCTTCAGCTTTTGTTCAG  63

Query  75    CTCTGATCTCTGAAGAAGACGAAGACTTAATCT-ATACAAAAATTGCTGCGAATTCGCGT  133
             ||||||||||||||||||||||||||||  ||| || || | |||||||| |||||||||
Sbjct  64    CTCTGATCTCTGAAGAAGACGAAGACTTTTTCTAAT-CATAGATTGCTGCAAATTCGCGT  122

Query  134   CAATTTAGCTGCGCTTTCTCGATCTTTTGTACTTCGGAAGCTGCAACGTTGTAGAATCGG  193
             |||||||||||||   | |   ||    ||||||||||||||| ||||||| || |||||
Sbjct  123   CAATTTAGCTGCG---T-T---TC----GTACTTCGGAAGCTGAAACGTTGGAGCATCGG  171

Query  194   CGGATCCAAGTCGGTAATTACTCAGCTTCTGGTTGTGATGTTAATGTGAGCTGCCCAATT  253
             ||||||||||||||||||||||||||||||||||||| |||||||||||||||| |||||
Sbjct  172   CGGATCCAAGTCGGTAATTACTCAGCTTCTGGTTGTGGTGTTAATGTGAGCTGCTCAATT  231

Query  254   TTGTGATGGTGGATTGAAGCGGTTGAATTTTTCTACTTCAGATTGCTTTTGTGTTTGATA  313
             ||||| | ||||||||||||||||||||||| ||| ||| ||||||||||||||||||||
Sbjct  232   TTGTGTTCGTGGATTGAAGCGGTTGAATTTTACTAGTTCCGATTGCTTTTGTGTTTGATA  291

Query  314   TGTTACTCATAATGAGATTATAG-CCTTGAAATTATGGAGGAGATTCGGTTATCGCCGCT  372
             || | || ||| ||||||||||| | ||||||| ||||||||||||||||||||||||||
Sbjct  292   TGATGCTTATAGTGAGATTATAGTCATTGAAATCATGGAGGAGATTCGGTTATCGCCGCT  351

Query  373   GAGACAGACAAGTGTTAAGTCTTCACTGTCAGGGAGGTCTACTCCAAGGGGTACACCTAG  432
             ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct  352   GAGACAGACAAGTGTTAAGTCTTCACTGTCAGGGAGGTCTACTCCAAGGGGTACACCTAG  411

Query  433   AGTGTATTCTGGTAGGACTCCGCGTAGAGGTCATGGTGGAGGAGGAGCGTTTCAGTGGTT  492
             | || |||||||||||||||| ||||||||||||| |||||||||||| ||||||| |||
Sbjct  412   ATTGCATTCTGGTAGGACTCCTCGTAGAGGTCATGTTGGAGGAGGAGCATTTCAGTTGTT  471

Query  493   TCGTAGTAGCCGGTTGGTTTATTGGCTGCTTTTGATTACGCTTTGGACGTATCTTGGATT  552
             ||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||
Sbjct  472   TCGTAGTAGCCGGTTGGTTTATTGGCTGCTTTTGATTACTCTTTGGACGTATCTTGGATT  531

Query  553   TTATGTTCAGTCTAGGTGGGCACATGATAATGAAAGCAAAGTTGAGTTTTTACGGTTTGG  612
             |||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||
Sbjct  532   TTATGTTCAGTCTAGGTGGGCACATGATAATGAAAGTAAAGTTGAGTTTTTACGGTTTGG  591

Query  613   AGGCAGACCGAGAAAGGATGAGTTATATATGGAGAAGATTAAAGGACTGGATGTTGTTGC  672
             ||||||||||||||||||||  |||||| |||||||||| |||||| |||||| ||||||
Sbjct  592   AGGCAGACCGAGAAAGGATGTTTTATATGTGGAGAAGATCAAAGGAATGGATGCTGTTGC  651

Query  673   TAATGAGAATTCTGAGGCTTTGGTTAATATTACTGGTAAAGATGATGCTGGTTC-GAATA  731
             |||||||||||||||||||||||| |||||||||||||||||||||||||| || || ||
Sbjct  652   TAATGAGAATTCTGAGGCTTTGGTAAATATTACTGGTAAAGATGATGCTGG-TCTGAGTA  710

Query  732   AGAGGACGGATGTTAGTCTGATCAAGAAAGATGATGGGGTTTCTCGACGGAGCTTGAGTT  791
             ||||||||||||||||||| ||||||||||||||||||| ||||||||||||||||||||
Sbjct  711   AGAGGACGGATGTTAGTCTAATCAAGAAAGATGATGGGGCTTCTCGACGGAGCTTGAGTT  770

Query  792   CCAAGCAGAAGACGAGAAAAACTGTCCGGACTTCTCGTAGTAAGATCCGTGTTAAGCAGA  851
             ||||||||||||| |||||||||||||||| ||| ||||||||| | |||| ||||||||
Sbjct  771   CCAAGCAGAAGACTAGAAAAACTGTCCGGAGTTCACGTAGTAAGGTACGTGGTAAGCAGA  830

Query  852   AGGTGATTAAAGAGGTACTTGAGACTAAGGATTTGGATGATGAGCAAGATCCACAACTTC  911
             ||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||
Sbjct  831   AGGTGATTAAAGAGGTACTTGAGACTAAGGATTTGGATGCTGAGCAAGATCCACAACTTC  890

Query  912   CATTGACAAATGCTACTTATGGTAAGCTTCTTGGTCCCTTTGGATCACTAGAGGATAAAG  971
             ||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||
Sbjct  891   CATTGACAAATGCTACTTATGGTAAGCTTCTTGGTCCTTTTGGATCACTAGAGGATAAAG  950

Query  972   TTCTTGAATGGAGCCCGCATAGAAGATCTGGGACTTGCGACAGGAAATCAGATTTTAAAC  1031
             |||||||||||||||| |||||| ||||||||||||| ||| ||||||||||||||||||
Sbjct  951   TTCTTGAATGGAGCCCACATAGACGATCTGGGACTTGTGACCGGAAATCAGATTTTAAAC  1010

Query  1032  GCCTTGTTTGGTCAAGGAGATTCGTCCTGCTTTTCCACGAGCTATCAATGACTGGTGCTC  1091
             ||||||||||||| ||||||||||||||||||||||| |||||||||||||| || ||||
Sbjct  1011  GCCTTGTTTGGTCGAGGAGATTCGTCCTGCTTTTCCATGAGCTATCAATGACAGGCGCTC  1070

Query  1092  CAATTTCTATGATGGAGCTGGCTTCAGAGCTTTTGAGCTGTGGTGCAACAGTCTCTGCAG  1151
             ||||||| ||||||||||||||||| ||||||||||||||||||||||||||||||||||
Sbjct  1071  CAATTTCAATGATGGAGCTGGCTTCGGAGCTTTTGAGCTGTGGTGCAACAGTCTCTGCAG  1130

Query  1152  TAGTTCTTAGCAGGAGAGGTGGATTGATGCAAGAGCTCAGTAGGAGAAGGATCAAAGTTG  1211
             ||||||| ||||||||||||||||||||||||||||||| ||||||||||||||||||||
Sbjct  1131  TAGTTCTCAGCAGGAGAGGTGGATTGATGCAAGAGCTCACTAGGAGAAGGATCAAAGTTG  1190

Query  1212  TTGAAGACAAAGGAGAACTCAGCTTCAAGACTGCCATGAAAGCAGATTTGATCATCGCAG  1271
             |||||||||||||||||||||||||||||||| ||||||||||||||||| |||||||||
Sbjct  1191  TTGAAGACAAAGGAGAACTCAGCTTCAAGACTTCCATGAAAGCAGATTTGGTCATCGCAG  1250

Query  1272  GATCAGCAGTGTGTACCTCATGGATAGATCAATACATGAATCATCATCCAGCTGGTGGAA  1331
             ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct  1251  GATCAGCAGTGTGTACCTCATGGATAGATCAATACATGAATCATCATCCAGCTGGTGGAA  1310

Query  1332  GTCAAATAGCTTGGTGGATAATGGAGAATCGACGAGAATACTTTGATCGAGCGAAACCAG  1391
             ||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct  1311  GTCAAATCGCTTGGTGGATAATGGAGAATCGACGAGAATACTTTGATCGAGCGAAACCAG  1370

Query  1392  TTCTTGACCGA-GTGAAAATGCTGATTTTCTTATCTGAATCACAGAGCAGACAATGGTTA  1450
             ||||||||| | ||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct  1371  TTCTTGACC-ATGTGAAAATGCTGATTTTCTTATCTGAATCACAGAGCAGACAATGGTTA  1429

Query  1451  ACATGGTGCGAGGAGGAGCATATAAAGCTTAGATCACAACCAGTGATTGTTCCACTATCT  1510
             ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct  1430  ACATGGTGCGAGGAGGAGCATATAAAGCTTAGATCACAACCAGTGATTGTTCCACTATCT  1489

Query  1511  GTTAATGATGAGTTAGCTTTTGTAGCGGGGATTCCTTCTTCACTCAACACACCAACACTT  1570
             |||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||
Sbjct  1490  GTTAATGATGAGTTAGCTTTTGTAGCTGGGATTCCTTCTTCACTCAACACACCAACACTT  1549

Query  1571  TCACCAGAGAAAATGAGGGTGAAGAGACAAATATTACGCGAATCAGTGAGAACAGAGTTA  1630
             ||||||||||||||||||| ||||||||||||||||||||||||||||||||  ||||||
Sbjct  1550  TCACCAGAGAAAATGAGGGAGAAGAGACAAATATTACGCGAATCAGTGAGAATGGAGTTA  1609

Query  1631  GGAATAACAGATTCAGATATGCTTGTGATGTCTCTTAGCAGCATAAACCCAACAAAGGGA  1690
             ||| |||||||| |||||||||||||||||||||||||||||||||||||||||||||| 
Sbjct  1610  GGATTAACAGATGCAGATATGCTTGTGATGTCTCTTAGCAGCATAAACCCAACAAAGGGG  1669

Query  1691  CAACTTCTTCTCCTTGAATCTATTGCCTTGGCTCTTTCTGAGAGAGGACAAGAATCTCAA  1750
             ||||||||||||||||||||||| | |||||||||||||||||||||| |||||||||||
Sbjct  1670  CAACTTCTTCTCCTTGAATCTATCGTCTTGGCTCTTTCTGAGAGAGGAAAAGAATCTCAA  1729

Query  1751  AGGAATCACAAGGGGATCATTAGGAAAGAAAAGGTTAGTCTCTCCAGCAAACATCGTTTA  1810
             || |||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct  1730  AGAAATCACAAGGGGATCATTAGGAAAGAAAAGGTTAGTCTCTCCAGCAAACATCGTTTA  1789

Query  1811  AGAGGTTCATCACGACAGATGAAAAGTGTTTCTCTCACACTTGACAATGGCTTAAGAAGA  1870
             ||||||||||||||||||||||||||||||||||||||||||||||||| | | ||||| 
Sbjct  1790  AGAGGTTCATCACGACAGATGAAAAGTGTTTCTCTCACACTTGACAATGCCGTGAGAAGC  1849

Query  1871  GAGAAGCAAGAACTTAAAGTTCTTTTAGGATCCGTGGGTTCAAAGAGCAACAAAGTTGGA  1930
             |||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||
Sbjct  1850  GAGAAGCAAGAACTTAAAGTTCTTTTAGGATCAGTGGGTTCAAAGAGCAACAAAGTTGGA  1909

Query  1931  TACGTTAAAGAGATGTTAAGCTTCTTGTCAAACAGCGGAAACTTATCTAAGTCGGTAATG  1990
             || ||||||||||||||||||||||| ||||| | |||||||||||||||||| ||||||
Sbjct  1910  TATGTTAAAGAGATGTTAAGCTTCTTATCAAAAAACGGAAACTTATCTAAGTCAGTAATG  1969

Query  1991  TGGACTCCTGCAACAACCCGTGTTGCTTCATTATACTCTGCAGCAGATGTCTACGTTACA  2050
             |||||||| |||||||| ||||||||||||||||||||||||||||||||||||||||||
Sbjct  1970  TGGACTCCCGCAACAACTCGTGTTGCTTCATTATACTCTGCAGCAGATGTCTACGTTACA  2029

Query  2051  AACTCCCAGGGAGTTGGTGAAACATTTGGTAGAGTGACAATCGAAGCAATGGCTTATGGA  2110
             ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct  2030  AACTCCCAGGGAGTTGGTGAAACATTTGGTAGAGTGACAATCGAAGCAATGGCTTATGGA  2089

Query  2111  CTTGCAGTGGTGGGAACAGATGCAGGAGGAACCAAAGAGATGGTTCAACACAACATGACT  2170
             |||||||| ||||||||||| ||||||||||||||||||||||||||||||||| |||||
Sbjct  2090  CTTGCAGTAGTGGGAACAGACGCAGGAGGAACCAAAGAGATGGTTCAACACAACGTGACT  2149

Query  2171  GGTCTACTTCACTCAATGGGGA-GATCCGGTAACAAAGAATTAGCTCATAATCTCTTGTA  2229
             |||||||||||||||||||| | |||||||||||||||||||||||||||||||||||||
Sbjct  2150  GGTCTACTTCACTCAATGGG-ACGATCCGGTAACAAAGAATTAGCTCATAATCTCTTGTA  2208

Query  2230  TCTACTTAGGAATCCAGACGAGAGGCTACGATTGGGGAGTGAAGGACGCAAAATGGTTGA  2289
             ||||||||||||| |||||| ||||||||||||||| |||||||||||||||||||||||
Sbjct  2209  TCTACTTAGGAATGCAGACGCGAGGCTACGATTGGGAAGTGAAGGACGCAAAATGGTTGA  2268

Query  2290  GAAAATGTACATGAAGCAACATATGTACAAGCGATTCGTCGATGTTCTGGTCAAATGCAT  2349
             |||||||||||||||||||||||||||||||||||||||||||||||| |||||||| ||
Sbjct  2269  GAAAATGTACATGAAGCAACATATGTACAAGCGATTCGTCGATGTTCTAGTCAAATGTAT  2328

Query  2350  GAGACCTTAAAAAAGCCCTTTG  2371
             |||||| ||||||| | |||||
Sbjct  2329  GAGACCATAAAAAA-CACTTTG  2349


> Ahg929405 jgi|Araly1|929405|scaffold_301862.1
Length=2131

 Score = 1136 bits (615),  Expect = 0.0
 Identities = 1176/1439 (82%), Gaps = 69/1439 (5%)
 Strand=Plus/Plus

Query  342   AAATTATGGAGGAGATTCGGTTATCGCCGCTGAGAC-AGACAAG-TGTTAAGTCTTCACT  399
             ||| |||||| ||  ||||| |||| ||| ||| || ||   || | ||||||||||| |
Sbjct  16    AAACTATGGAAGATCTTCGGCTATCACCGTTGAAACTAG-GTAGCT-TTAAGTCTTCATT  73

Query  400   GTCAGGGAGGTCTACTCCAAGGGG-T-A-C-AC--CT---AGAGTGTATTCTGGTAGGAC  450
             |||||||||||||||||||||||| | | | ||  ||   |||||| |||| || |||||
Sbjct  74    GTCAGGGAGGTCTACTCCAAGGGGTTCACCTACATCTAGGAGAGTGCATTCAGGCAGGAC  133

Query  451   TCCGCGT--AGAGGTC-ATGGTGGAGGAGGAGCGT-TTCAGTGGTTTC-GTAGTAGCCGG  505
             ||| |||  ||||| | | ||| | || ||||| | |||||||| ||| | |||| ||||
Sbjct  134   TCCACGTAGAGAGGGCAAAGGTAGTGGTGGAGC-TGTTCAGTGG-TTCAGAAGTAACCGG  191

Query  506   TTGGTTTATTGGCTGCTTTTGATTACGCTTTGGACGTATCTTGGATTTTATGTTCAGTCT  565
              || | |||||| | || |||||||| |||||||| ||||||||||||||||||||||| 
Sbjct  192   CTGCTATATTGGTTACTGTTGATTACCCTTTGGACATATCTTGGATTTTATGTTCAGTCC  251

Query  566   AGGTGGGCACATGATAATGA-AAGCAAAGTTGAGTTTTTACGGTTTGGAGGCAGACCGAG  624
             || |||||||||||| |||| ||  ||||||||||| |||||||||||||||| || |||
Sbjct  252   AGATGGGCACATGATGATGATAA-TAAAGTTGAGTTCTTACGGTTTGGAGGCAAACTGAG  310

Query  625   A-AAGGATGAGTTATATATGGAGAAGATTAAAGGACTGGATGT-TGTTGCTAATGAGAAT  682
             | || ||||  ||  || ||||| ||| |||| |||| ||| |  |||||||||||||||
Sbjct  311   AGAA-GATGTTTTGCATGTGGAGCAGAATAAACGACTTGAT-TCAGTTGCTAATGAGAAT  368

Query  683   TCTGAGGCTTTGGTTA-ATATTACTGGTAAAGATGATG-CT-GGT-TCGAATAAGAGGAC  738
             ||| | ||| | | || ||| |||   || || |   |  | ||| |  |||||||||| 
Sbjct  369   TCTCATGCTCTAG-TAGATACTACCAATATAG-T-CCGTATAGGTGT-AAATAAGAGGAT  424

Query  739   GGATGTTAGTCTGATCAAGAAAGATGATGGGGTTTCTCGACGGAGCTTGAGTTCCAAGCA  798
             | |||| | | ||  ||||||||| ||||     |||| | | |||||||| ||| || |
Sbjct  425   GCATGTAACTTTGGCCAAGAAAGAGGATGACACATCTCAAAGAAGCTTGAGCTCC-AGGA  483

Query  799   -GAAGACGAGAAAAACT-GTCCGGACTTCTCGTAGTAAGATCCGT-GTTAAGCAGAAGGT  855
              || ||| |||||| || || || | ||| |||| || ||| | | | ||||||||||||
Sbjct  484   GGAGGACCAGAAAAGCTAGT-CGTAGTTCACGTACTAGGATTCATAG-TAAGCAGAAGGT  541

Query  856   GATTAAAGAGGT-ACTTGAGACTAAGGATTTGGATGATGAGCAAGATCCACAACTTCCAT  914
             ||  ||| | || | | ||||||||||| || |  |||||||||| || | |||||||| 
Sbjct  542   GA-GAAA-A-GTGA-TGGAGACTAAGGACTT-G--GATGAGCAAGGTCAAGAACTTCCAA  594

Query  915   TGACAAATGCTACTTATGGTAAGCTTCTTGGTCCCTTTGGATCACTAGAGGATAAAGTTC  974
               ||||||| ||| || |||||| || ||||||| ||||||||||| ||||||| |||||
Sbjct  595   ACACAAATGTTACCTACGGTAAGATTTTTGGTCCTTTTGGATCACTGGAGGATAGAGTTC  654

Query  975   TTGAATGGAGCCCGC-ATAGAAGATCTGGGACTTGCGACAGGAAATCAGATTTTAAACGC  1033
             |||||||||| |||| | ||  |||| ||||| || |||||||||||||| || ||||| 
Sbjct  655   TTGAATGGAGTCCGCAAAAG-CGATCAGGGACCTGTGACAGGAAATCAGACTTCAAACGT  713

Query  1034  CTTGTTTGGTCAAGGAGATTCGTCCTGCTTTTCCACGAGCTATCAATGACTGGTGCTCCA  1093
             ||||||||||| || ||||||||||| |||||||| || ||||| |||||||||||||||
Sbjct  714   CTTGTTTGGTCTAGAAGATTCGTCCTACTTTTCCATGAACTATCGATGACTGGTGCTCCA  773

Query  1094  ATTTCTATGATGGAGCTGGCTTCAGAGCTTTTGAGCTGTGGTGCAACAGTCTCTGCAGTA  1153
             ||||| ||||||||| ||||||| |||||||||||||||||||||||||| | |||||||
Sbjct  774   ATTTCAATGATGGAGTTGGCTTCCGAGCTTTTGAGCTGTGGTGCAACAGTATATGCAGTA  833

Query  1154  GTTCTTAGCAGGAGAGGTGGATTGA-TGCAAGAGCTCAGTAGGAGAAGGATCAAAGTTGT  1212
             || || ||||| || |||||||| | ||||||||||||  ||||||||||||||||| ||
Sbjct  834   GTCCTGAGCAGAAGGGGTGGATT-ATTGCAAGAGCTCACAAGGAGAAGGATCAAAGTGGT  892

Query  1213  TGAAGACAAAGGAGAACTCAGCTTCAAGACTGCCATGAAAGCAGAT-TTGATCATCGCAG  1271
             ||||||||||||||||||||||||||| |||||||||||||||||| ||| |||| ||||
Sbjct  893   TGAAGACAAAGGAGAACTCAGCTTCAAAACTGCCATGAAAGCAGATCTTG-TCATTGCAG  951

Query  1272  GATCAGCAGTGTGTACCTCATGGATAGATCAATACATGAATCATCATCCAGCTGGTGGAA  1331
             |||||||||||||| | ||||||||||||||||||||| |||| ||||||||||||||||
Sbjct  952   GATCAGCAGTGTGTGCTTCATGGATAGATCAATACATGGATCACCATCCAGCTGGTGGAA  1011

Query  1332  GTCAAATAGCTTGGTGGATAATGGAGAATCGACGAGAATACTTTGATCGAGCGAAACCAG  1391
             ||||||| ||||||||| | |||||||| || ||||| |||||||||||||||||||| |
Sbjct  1012  GTCAAATCGCTTGGTGGGTGATGGAGAACCGGCGAGAGTACTTTGATCGAGCGAAACCTG  1071

Query  1392  TTCTTGACCGAGTGAAAATGCTGA-TTTTCTTATCTGAA-TCACAGAGCAGACAATGGTT  1449
             | ||||||||||||||| |||| | ||||| |||||||| |  ||||||| ||||||| |
Sbjct  1072  TACTTGACCGAGTGAAACTGCTAATTTTTC-TATCTGAAGT-TCAGAGCAAACAATGGAT  1129

Query  1450  AACATGGTGCGAGGAGGAGCATATAAAGCTTAGATCACAACCAGTGATTGTTCCACTATC  1509
             ||||||||| || ||||| |||||||||||||| || || || || |||||||| || ||
Sbjct  1130  AACATGGTGTGAAGAGGACCATATAAAGCTTAGGTCTCAGCCGGTTATTGTTCCGCTGTC  1189

Query  1510  TGTTAATGATGAGTTAGCTTTTGTAGCGGGGA-TTCCTTCTTCACTCAACACACCAACAC  1568
              ||||||||||||||||||||||| || |||| || | |||||||| || || || ||||
Sbjct  1190  CGTTAATGATGAGTTAGCTTTTGTTGCTGGGATTTAC-TCTTCACTAAATACTCCGACAC  1248

Query  1569  TTTCACC-AGAGAAAATGAGGGTGAAGAGAC-AAATATTACGCGAATCAGTGAGAACAGA  1626
             |  | || |||||  |||| || ||| |||| |||  || || |||||||| ||||| ||
Sbjct  1249  TAAC-CCAAGAGATGATGAAGGAGAAAAGACAAAAGCTT-CGTGAATCAGTCAGAACGGA  1306

Query  1627  GTTAGGAATAACAGATTCA-GATATGCTTGTGATGTCTCTTAGCAGCATAAACCCAACAA  1685
             ||| ||  | ||||| | | |||||||||||||||||||||||||||||||| |||  ||
Sbjct  1307  GTTCGGTTTGACAGA-TAAGGATATGCTTGTGATGTCTCTTAGCAGCATAAATCCAGGAA  1365

Query  1686  AGGGACAACTTCTTCTCCTTGAATCTATTGCCTTGGCTCTTTCTGAGAGAGGACAAGAA  1744
             |||||||||||||||||||||||||| | |||||||| ||    ||||||| |||||||
Sbjct  1366  AGGGACAACTTCTTCTCCTTGAATCTGTCGCCTTGGCACTG---GAGAGAGAACAAGAA  1421


 Score =  425 bits (230),  Expect = 6e-118
 Identities = 405/491 (82%), Gaps = 6/491 (1%)
 Strand=Plus/Plus

Query  1872  AGAAGCAAGAACTTAAAGTTCTT-TTAGGATCCG-TGGGTTCAAAGAGCAACAAAGTTGG  1929
             |||| ||||| |||||| ||||| || ||||| | |||| || |||||||||||||||| 
Sbjct  1624  AGAAACAAGACCTTAAACTTCTTCTT-GGATCAGTTGGG-TCCAAGAGCAACAAAGTTGC  1681

Query  1930  ATACGTTAAAGAGATGTTAAGCTTCTTGTCAAACAGCGGAAACTTATCTAAGTCGGTAAT  1989
             ||||||||| || ||||| ||||||||||||||||  ||||||||||| || |||||  |
Sbjct  1682  ATACGTTAAGGAAATGTTGAGCTTCTTGTCAAACAATGGAAACTTATCGAACTCGGTTCT  1741

Query  1990  GTGGACTCCTGCAACAACCCGTGTTGCTTCATTATACTCTGCAGCAGATGTCTACGTTAC  2049
             ||||||||| || || || |||||||| ||||||||||||||||||||||||||||| ||
Sbjct  1742  GTGGACTCCAGCGACCACTCGTGTTGCCTCATTATACTCTGCAGCAGATGTCTACGTCAC  1801

Query  2050  AAACTCCCAGGGAGTTGGTGAAACATTTGGTAGAGTGACAATCGAAGCAATGGCTTATGG  2109
             ||||||||||||| ||||||||||||| || |||||||| ||||||||||||||||||||
Sbjct  1802  AAACTCCCAGGGAATTGGTGAAACATTCGGGAGAGTGACTATCGAAGCAATGGCTTATGG  1861

Query  2110  ACTTGCAGTGGTGGGAACAGATGCAGGAGGAACCAAAGAGATGGTTCAACACAACATGAC  2169
              ||| | ||  | |||||||| || |||||||| |||||||| ||  | |||||  | ||
Sbjct  1862  TCTTCCGGTACTTGGAACAGACGCTGGAGGAACAAAAGAGATAGTGGAGCACAATGTCAC  1921

Query  2170  TGGTCTACTTCACTCAATGGGGAGATCCGGTAACAAAGAATTAGCTCATAATCTCTTGTA  2229
              || ||||||||| |  |||||||  | |||||||||   |||||||| |||||||||| 
Sbjct  1922  AGGGCTACTTCACCCTGTGGGGAGGGCAGGTAACAAATTTTTAGCTCAGAATCTCTTGTT  1981

Query  2230  TCTACTTAGGAATCCAGACGAGA-GGCTACGATTGGGGAGTGAAGGACGCAAAATGGTTG  2288
             ||| ||||| || || | | | | || ||| | | || ||  |||||||  |||| ||||
Sbjct  1982  TCTTCTTAGAAACCC-GTCTACAAGGTTACAACTAGGTAGCCAAGGACGTGAAATCGTTG  2040

Query  2289  AGAAAATGTACATGAAGCAACATATGTACAAGCGATTCGTCGATGTTCTGGTCAAATGCA  2348
             |||| |||||||||||||| || | ||||||| |||| || |||||||| |||||||| |
Sbjct  2041  AGAAGATGTACATGAAGCAGCACACGTACAAGAGATTTGTGGATGTTCTAGTCAAATGTA  2100

Query  2349  TGAGACCTTAA  2359
             ||||||| |||
Sbjct  2101  TGAGACCCTAA  2111


> Ahg923318 jgi|Araly1|923318|scaffold_104599.1
Length=257

 Score =  183 bits (99),  Expect = 4e-45
 Identities = 120/130 (92%), Gaps = 2/130 (2%)
 Strand=Plus/Plus

Query  2251  GAGGCTACGATTGGGGAGTGAAGGACGCAAAATGGTTGAGAAAATGTACATGAAGCAACA  2310
             |||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||
Sbjct  129   GAGGCTACGATTAGGGAGTGAAGGACGCAAAATGGTTGAGAAAATGTACATGAAGCAACA  188

Query  2311  TATGTACAAGCGATTCGTCGATGTTCTGGTCAAATGCATGAGACCTTAAAAAAGCCCTTT  2370
             ||||||||| |||||||| ||||||||  |||||||||||||||| ||||||| | ||| 
Sbjct  189   TATGTACAATCGATTCGTTGATGTTCTTATCAAATGCATGAGACCATAAAAAA-CACTTG  247

Query  2371  G-TTTACCAA  2379
             | ||||||||
Sbjct  248   GATTTACCAA  257


 Score =  163 bits (88),  Expect = 5e-39
 Identities = 113/125 (90%), Gaps = 2/125 (2%)
 Strand=Plus/Plus

Query  2075  TTTGGTAGAGTGACAATCGAAGCAATGGCTTATGGACTTGCAGTGGTGGGAACAGATGCA  2134
             ||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct  1     TTTGGGAGAGTGACAATCGAAGCAATGGCTTATGGACTTGCAGTGGTGGGAACAGATGCA  60

Query  2135  GGAGGAACCAAAGAGATGGTTCAACACAACATGACTGGTCTACTTCACTCAATGGGGA-G  2193
             |||||| | |||||||| || || |||||  |||| ||| |||||||||||||||| | |
Sbjct  61    GGAGGAGCAAAAGAGATCGTGCAGCACAATGTGACCGGTTTACTTCACTCAATGGG-ACG  119

Query  2194  ATCCG  2198
             |||||
Sbjct  120   ATCCG  124



Lambda     K      H
    1.33    0.621     1.12 

Gapped
Lambda     K      H
    1.28    0.460    0.850 

Effective search space used: 98463283325


  Database: halleri_transcript_ahg.fa
    Posted date:  Sep 25, 2014  2:02 AM
  Number of letters in database: 38,939,717
  Number of sequences in database:  32,672



Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5