BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: halleri_transcript_ahg.fa
32,672 sequences; 38,939,717 total letters
Query= AT1G52460.1
Length=828
Score E
Sequences producing significant alignments: (Bits) Value
Ahg914416 jgi|Araly1|914416|Al_scaffold_0001_4670 673 0.0
Ahg914009 jgi|Araly1|914009|Al_scaffold_0001_4263 67.6 1e-10
> Ahg914416 jgi|Araly1|914416|Al_scaffold_0001_4670
Length=690
Score = 673 bits (364), Expect = 0.0
Identities = 592/695 (85%), Gaps = 44/695 (6%)
Strand=Plus/Plus
Query 38 ATGGCGGCTTCTAGTAGTAGCAACAGA-G-CA-G-A--T--TT-TGTTGTGCAACCTAAA 88
|||||||||||| ||||||| |||||| | | | | | || ||||||||||||||||
Sbjct 1 ATGGCGGCTTCTGGTAGTAGAAACAGAGGAGATGTACTTGATTCTGTTGTGCAACCTAAA 60
Query 89 GGAGAGCATAGAGTCACTATAGTATGGCTGCATGATAAGGATGAGCATTTCTCTGATTCA 148
||||||||||| ||||||||||||||||||||||||||||||||||||||| ||||||||
Sbjct 61 GGAGAGCATAGGGTCACTATAGTATGGCTGCATGATAAGGATGAGCATTTCACTGATTCA 120
Query 149 GTTCAGTTTGTGAAAATTTTGAATCTTAATAATATCAAATGGATATGTCCATCTCTCGTG 208
|||||||||||||||| ||||||| ||| || ||||||||||||||||||||||||||
Sbjct 121 GTTCAGTTTGTGAAAAAATTGAATCGTAAAAACGTCAAATGGATATGTCCATCTCTCGTG 180
Query 209 CTCCCA-ACTTCGA-GGAACAAACCCGAATATAATATCAACC---ATG--C---A----T 254
||||| | ||| | |||||||||||| |||||| ||||||| ||| | | |
Sbjct 181 TTCCCAGA-TTC-ATGGAACAAACCCGGATATAAAATCAACCAATATGTTCGAGAGGCTT 238
Query 255 TATATCTGACAGCTGAACGTGTTGCTAACCTTTTCTCGGATGAACCAGAAAATGTCATAA 314
|||||| |||||||||| |||| ||| |||| || ||| |||||||||||||||||||
Sbjct 239 TATATCCCACAGCTGAACTTGTTAATAAACTTTCCTTGGAAGAACCAGAAAATGTCATAA 298
Query 315 AAGGAGTGGGAGGTTTTGGCATGGGTGCAGCAGTAGCTCTCCACTTTGCAACAAGTTGTG 374
|||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 299 AAGGAGTGGGTGGTTTTGGCATGGGTGCAGCAGTAGCTCTCCACTTTGCAACAAGTTGTG 358
Query 375 CTCTTAACCATTATACTATAAATCCCCGAGTTGTTGTTGGAATCAGCGGGTGGCTTTCTA 434
|||||||||||||| |||||||||| ||||||||||||| |||||||||||||||| |||
Sbjct 359 CTCTTAACCATTATCCTATAAATCCTCGAGTTGTTGTTGCAATCAGCGGGTGGCTTGCTA 418
Query 435 AGGCGAAGAG-CC-TAAAACGA-AGTATAGAATTTGCTTCA-TATGAGGCTCCACCTCGT 490
|||| | | | || ||||| | || ||||||||| | || | || ||| | |||||
Sbjct 419 AGGC-ATG-GTCCGTAAAAA-ACAGCATAGAATTTTATACACT-TGTTGCTAAATCTCGT 474
Query 491 GCTGCATCGCAGTCAATCTTACTTACACATGGACAAAGA-GATCATGT--T-CCTCAC-C 545
||||||| |||||||||||| ||||| |||||| | ||| |||| ||| | |||||| |
Sbjct 475 GCTGCATTGCAGTCAATCTTTCTTACGCATGGA-ATAGACGATCCTGTAGTTCCTCACTC 533
Query 546 TATGTGGCTGTGGAGAAGAAGCTGCTTTTATAC-TTAGAGAGGCTGGATTTAGAGACGTC 604
|||| |||||||||||||||||||| | | ||| | | ||||||||| |||| |||
Sbjct 534 -ATGTAGCTGTGGAGAAGAAGCTGCTGCG-TCCCTTATAAATGCTGGATTTGGAGAGGTC 591
Query 605 AGGTTCTTACCATTTGCAAGGTTTGGACCGA-TCGCTCATGAGATCAATCGCAACGTAAT 663
|||||| ||||||| |||||||||||||||| | ||||||||||||||||||| || |||
Sbjct 592 AGGTTCCTACCATTAGCAAGGTTTGGACCGACT-GCTCATGAGATCAATCGCAGCGAAAT 650
Query 664 GGTCAAAAGCTGGTTAGAAGAGAAGCTCCCGCTCG 698
||||||||||||||| |||||||||||||||||||
Sbjct 651 GGTCAAAAGCTGGTTGGAAGAGAAGCTCCCGCTCG 685
> Ahg914009 jgi|Araly1|914009|Al_scaffold_0001_4263
Length=573
Score = 67.6 bits (36), Expect = 1e-10
Identities = 42/45 (93%), Gaps = 0/45 (0%)
Strand=Plus/Plus
Query 87 AAGGAGAGCATAGAGTCACTATAGTATGGCTGCATGATAAGGATG 131
||||||| || || |||||||||||||||||||||||||||||||
Sbjct 38 AAGGAGACCAAAGGGTCACTATAGTATGGCTGCATGATAAGGATG 82
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 30612702351
Database: halleri_transcript_ahg.fa
Posted date: Sep 25, 2014 2:02 AM
Number of letters in database: 38,939,717
Number of sequences in database: 32,672
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5