BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: halleri_transcript_ahg.fa
32,672 sequences; 38,939,717 total letters
Query= AT1G52470.1
Length=1024
Score E
Sequences producing significant alignments: (Bits) Value
Ahg914009 jgi|Araly1|914009|Al_scaffold_0001_4263 418 4e-116
Ahg914416 jgi|Araly1|914416|Al_scaffold_0001_4670 350 2e-95
> Ahg914009 jgi|Araly1|914009|Al_scaffold_0001_4263
Length=573
Score = 418 bits (226), Expect = 4e-116
Identities = 348/402 (87%), Gaps = 27/402 (7%)
Strand=Plus/Plus
Query 338 TACGACTTCGGATCTAATATCAAACAAGATGATCGAGAGGCATTAGATTCCGCAGCTAAA 397
|||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||
Sbjct 85 TACGACTTCGGATCTAATATCAAACAAGATGATCGAGAGGCAATAGATTCCGCAGCTAAA 144
Query 398 TTTGTTGCTGATCTTTTA-TTG-CGTGAACCACTAAATGTCGTAAAAGGAGTAGGAGGCT 455
||||||||| ||||| ||| | ||||||||||||||||||||||||||||||||| |
Sbjct 145 CTTGTTGCTGG-CTTTTTGTTGGC-TGAACCACTAAATGTCGTAAAAGGAGTAGGAGGTT 202
Query 456 TTGGCATGGGTGCAGTAGTAGCTCTCCAATTTGCAACAAATTGTGCTCTTGGACATTATC 515
||||||||||||||||||| |||||||| |||||||||||||||||||||||||||||||
Sbjct 203 TTGGCATGGGTGCAGTAGTTGCTCTCCAGTTTGCAACAAATTGTGCTCTTGGACATTATC 262
Query 516 CTATAAATCCCCGAGTTGTTGTTGGAATTAATGGGTGGCTTTCTATTACGGGGAGCATAA 575
|| ||| ||||||||||||||||||||||||||| ||||| |||||| | |
Sbjct 263 CTTTAAGTCCCCGAGTTGTTGTTGGAATTAATGGATGGCTGTCTATT--G-----C---- 311
Query 576 CAAGCAGCATAGAATATACAGTTGGGGCTGTAGCTCGTGCTGCATCA-CAGAAAATCTT- 633
| | | ||||||| ||||||||||||||||||||||||||| || |||||||||||
Sbjct 312 C--G--GTATAGAATCTACAGTTGGGGCTGTAGCTCGTGCTGCG-CAACAGAAAATCTTA 366
Query 634 TTTTACACGTGGAGCAGA-GAATCGTCTACTTCCTTACACCCGTGAAGAAGAAGTTGTTG 692
|||| ||||| | |||| || |||| |||||||||||||| ||||| |||| |||||||
Sbjct 367 TTTT-CACGTCCAACAGACGA-TCGTATACTTCCTTACACCAGTGAAAAAGAGGTTGTTG 424
Query 693 AGTCCCTTAGA-GAGGCTGGTTTTGGAGACGTCTTTTTCTTA 733
| ||||||| | |||||||| || ||||| |||| ||||||
Sbjct 425 ACTCCCTTA-ACGAGGCTGGCTTCGGAGAAGTCTACTTCTTA 465
> Ahg914416 jgi|Araly1|914416|Al_scaffold_0001_4670
Length=690
Score = 350 bits (189), Expect = 2e-95
Identities = 432/549 (79%), Gaps = 17/549 (3%)
Strand=Plus/Plus
Query 189 TTGTGGAACCTCAAGGAGATCAAAGGGCCAGTATAGTATGGCTGCATGATAAGGATGAGC 248
||||| ||||| ||||||| || |||| || |||||||||||||||||||||||||||||
Sbjct 47 TTGTGCAACCTAAAGGAGAGCATAGGGTCACTATAGTATGGCTGCATGATAAGGATGAGC 106
Query 249 ATTTCACTGATTCAGTGCAGTTTGTGAAAAGTTTAAAACTTAAAAATGTCAACTGGATTT 308
|||||||||||||||| ||||||||||||| || || | |||||| ||||| ||||| |
Sbjct 107 ATTTCACTGATTCAGTTCAGTTTGTGAAAAAATTGAATCGTAAAAACGTCAAATGGATAT 166
Query 309 GTCCACCTATCGTCTACACAAATACATCGTACGA-CTTCGGATCTAATATCAAACAAGAT 367
||||| || |||| | | || || ||| | || | | ||||| ||| ||||| ||| ||
Sbjct 167 GTCCATCTCTCGTGTTCCCAGATTCATGGAACAAACC-CGGATATAAAATCAACCAATAT 225
Query 368 GATCGAGAGGCATTAGATTCCGCAGCTAAATTTGTTGCTGATCTTTTATTGCGT-GAACC 426
| ||||||||| ||| || || ||||| || ||||| | | |||| ||| | |||||
Sbjct 226 GTTCGAGAGGCTTTATATCCCACAGCTGAACTTGTTAATAAACTTTCCTTG-GAAGAACC 284
Query 427 ACTAAATGTCGTAAAAGGAGTAGGAGGCTTTGGCATGGGTGCAGTAGTAGCTCTCCAATT 486
| ||||||| |||||||||| || || |||||||||||||||| |||||||||||| ||
Sbjct 285 AGAAAATGTCATAAAAGGAGTGGGTGGTTTTGGCATGGGTGCAGCAGTAGCTCTCCACTT 344
Query 487 TGCAACAAATTGTGCTCTTGGAC-ATTATCCTATAAATCCCCGAGTTGTTGTTGGAATTA 545
|||||||| |||||||||| || |||||||||||||||| ||||||||||||| ||| |
Sbjct 345 TGCAACAAGTTGTGCTCTTA-ACCATTATCCTATAAATCCTCGAGTTGTTGTTGCAATCA 403
Query 546 ATGGGTGGCTTTCTATTACGGGGAGCATAACAAGCAGCATAGAAT---ATACAGTTGGGG 602
||||||||| ||| | || | ||| || ||||||||||| ||||| ||| |
Sbjct 404 GCGGGTGGCTTGCTAAGGCATGGTCCGTAAAAAACAGCATAGAATTTTATACACTTGTTG 463
Query 603 CTGTAGCTCGTGCTGCATCACAGAAAATCTTTTTTACACGTGGAGCAGA-GAATCGTCTA 661
|| | |||||||||||| ||| ||||||| |||| | |||| ||| || || | ||
Sbjct 464 CTAAATCTCGTGCTGCATTGCAGTCAATCTTTCTTACGCATGGAATAGACGA-TCCTGTA 522
Query 662 CTTCCTTACACC-----C-GTGAAGAAGAAGTTGTTGAGTCCCTTAGAGAGGCTGGTTTT 715
||||| || | | ||| |||||||| || || |||||||| | | ||||| |||
Sbjct 523 GTTCCTCACTCATGTAGCTGTGGAGAAGAAGCTGCTGCGTCCCTTATAAATGCTGGATTT 582
Query 716 GGAGACGTC 724
||||| |||
Sbjct 583 GGAGAGGTC 591
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 38084794083
Database: halleri_transcript_ahg.fa
Posted date: Sep 25, 2014 2:02 AM
Number of letters in database: 38,939,717
Number of sequences in database: 32,672
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5