BLASTN 2.2.26+ Reference: Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000), "A greedy algorithm for aligning DNA sequences", J Comput Biol 2000; 7(1-2):203-14. Database: halleri_transcript_ahg.fa 32,672 sequences; 38,939,717 total letters Query= AT1G52470.1 Length=1024 Score E Sequences producing significant alignments: (Bits) Value Ahg914009 jgi|Araly1|914009|Al_scaffold_0001_4263 418 4e-116 Ahg914416 jgi|Araly1|914416|Al_scaffold_0001_4670 350 2e-95 > Ahg914009 jgi|Araly1|914009|Al_scaffold_0001_4263 Length=573 Score = 418 bits (226), Expect = 4e-116 Identities = 348/402 (87%), Gaps = 27/402 (7%) Strand=Plus/Plus Query 338 TACGACTTCGGATCTAATATCAAACAAGATGATCGAGAGGCATTAGATTCCGCAGCTAAA 397 |||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||| Sbjct 85 TACGACTTCGGATCTAATATCAAACAAGATGATCGAGAGGCAATAGATTCCGCAGCTAAA 144 Query 398 TTTGTTGCTGATCTTTTA-TTG-CGTGAACCACTAAATGTCGTAAAAGGAGTAGGAGGCT 455 ||||||||| ||||| ||| | ||||||||||||||||||||||||||||||||| | Sbjct 145 CTTGTTGCTGG-CTTTTTGTTGGC-TGAACCACTAAATGTCGTAAAAGGAGTAGGAGGTT 202 Query 456 TTGGCATGGGTGCAGTAGTAGCTCTCCAATTTGCAACAAATTGTGCTCTTGGACATTATC 515 ||||||||||||||||||| |||||||| ||||||||||||||||||||||||||||||| Sbjct 203 TTGGCATGGGTGCAGTAGTTGCTCTCCAGTTTGCAACAAATTGTGCTCTTGGACATTATC 262 Query 516 CTATAAATCCCCGAGTTGTTGTTGGAATTAATGGGTGGCTTTCTATTACGGGGAGCATAA 575 || ||| ||||||||||||||||||||||||||| ||||| |||||| | | Sbjct 263 CTTTAAGTCCCCGAGTTGTTGTTGGAATTAATGGATGGCTGTCTATT--G-----C---- 311 Query 576 CAAGCAGCATAGAATATACAGTTGGGGCTGTAGCTCGTGCTGCATCA-CAGAAAATCTT- 633 | | | ||||||| ||||||||||||||||||||||||||| || ||||||||||| Sbjct 312 C--G--GTATAGAATCTACAGTTGGGGCTGTAGCTCGTGCTGCG-CAACAGAAAATCTTA 366 Query 634 TTTTACACGTGGAGCAGA-GAATCGTCTACTTCCTTACACCCGTGAAGAAGAAGTTGTTG 692 |||| ||||| | |||| || |||| |||||||||||||| ||||| |||| ||||||| Sbjct 367 TTTT-CACGTCCAACAGACGA-TCGTATACTTCCTTACACCAGTGAAAAAGAGGTTGTTG 424 Query 693 AGTCCCTTAGA-GAGGCTGGTTTTGGAGACGTCTTTTTCTTA 733 | ||||||| | |||||||| || ||||| |||| |||||| Sbjct 425 ACTCCCTTA-ACGAGGCTGGCTTCGGAGAAGTCTACTTCTTA 465 > Ahg914416 jgi|Araly1|914416|Al_scaffold_0001_4670 Length=690 Score = 350 bits (189), Expect = 2e-95 Identities = 432/549 (79%), Gaps = 17/549 (3%) Strand=Plus/Plus Query 189 TTGTGGAACCTCAAGGAGATCAAAGGGCCAGTATAGTATGGCTGCATGATAAGGATGAGC 248 ||||| ||||| ||||||| || |||| || ||||||||||||||||||||||||||||| Sbjct 47 TTGTGCAACCTAAAGGAGAGCATAGGGTCACTATAGTATGGCTGCATGATAAGGATGAGC 106 Query 249 ATTTCACTGATTCAGTGCAGTTTGTGAAAAGTTTAAAACTTAAAAATGTCAACTGGATTT 308 |||||||||||||||| ||||||||||||| || || | |||||| ||||| ||||| | Sbjct 107 ATTTCACTGATTCAGTTCAGTTTGTGAAAAAATTGAATCGTAAAAACGTCAAATGGATAT 166 Query 309 GTCCACCTATCGTCTACACAAATACATCGTACGA-CTTCGGATCTAATATCAAACAAGAT 367 ||||| || |||| | | || || ||| | || | | ||||| ||| ||||| ||| || Sbjct 167 GTCCATCTCTCGTGTTCCCAGATTCATGGAACAAACC-CGGATATAAAATCAACCAATAT 225 Query 368 GATCGAGAGGCATTAGATTCCGCAGCTAAATTTGTTGCTGATCTTTTATTGCGT-GAACC 426 | ||||||||| ||| || || ||||| || ||||| | | |||| ||| | ||||| Sbjct 226 GTTCGAGAGGCTTTATATCCCACAGCTGAACTTGTTAATAAACTTTCCTTG-GAAGAACC 284 Query 427 ACTAAATGTCGTAAAAGGAGTAGGAGGCTTTGGCATGGGTGCAGTAGTAGCTCTCCAATT 486 | ||||||| |||||||||| || || |||||||||||||||| |||||||||||| || Sbjct 285 AGAAAATGTCATAAAAGGAGTGGGTGGTTTTGGCATGGGTGCAGCAGTAGCTCTCCACTT 344 Query 487 TGCAACAAATTGTGCTCTTGGAC-ATTATCCTATAAATCCCCGAGTTGTTGTTGGAATTA 545 |||||||| |||||||||| || |||||||||||||||| ||||||||||||| ||| | Sbjct 345 TGCAACAAGTTGTGCTCTTA-ACCATTATCCTATAAATCCTCGAGTTGTTGTTGCAATCA 403 Query 546 ATGGGTGGCTTTCTATTACGGGGAGCATAACAAGCAGCATAGAAT---ATACAGTTGGGG 602 ||||||||| ||| | || | ||| || ||||||||||| ||||| ||| | Sbjct 404 GCGGGTGGCTTGCTAAGGCATGGTCCGTAAAAAACAGCATAGAATTTTATACACTTGTTG 463 Query 603 CTGTAGCTCGTGCTGCATCACAGAAAATCTTTTTTACACGTGGAGCAGA-GAATCGTCTA 661 || | |||||||||||| ||| ||||||| |||| | |||| ||| || || | || Sbjct 464 CTAAATCTCGTGCTGCATTGCAGTCAATCTTTCTTACGCATGGAATAGACGA-TCCTGTA 522 Query 662 CTTCCTTACACC-----C-GTGAAGAAGAAGTTGTTGAGTCCCTTAGAGAGGCTGGTTTT 715 ||||| || | | ||| |||||||| || || |||||||| | | ||||| ||| Sbjct 523 GTTCCTCACTCATGTAGCTGTGGAGAAGAAGCTGCTGCGTCCCTTATAAATGCTGGATTT 582 Query 716 GGAGACGTC 724 ||||| ||| Sbjct 583 GGAGAGGTC 591 Lambda K H 1.33 0.621 1.12 Gapped Lambda K H 1.28 0.460 0.850 Effective search space used: 38084794083 Database: halleri_transcript_ahg.fa Posted date: Sep 25, 2014 2:02 AM Number of letters in database: 38,939,717 Number of sequences in database: 32,672 Matrix: blastn matrix 1 -2 Gap Penalties: Existence: 0, Extension: 2.5