BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: halleri_transcript_ahg.fa
32,672 sequences; 38,939,717 total letters
Query= AT1G52490.1
Length=1542
Score E
Sequences producing significant alignments: (Bits) Value
Ahg923770 jgi|Araly1|923770|scaffold_105051.1 481 8e-135
> Ahg923770 jgi|Araly1|923770|scaffold_105051.1
Length=2208
Score = 481 bits (260), Expect = 8e-135
Identities = 344/385 (89%), Gaps = 4/385 (1%)
Strand=Plus/Plus
Query 403 GATTGTCCTCAATGGAGAAAAATCCGAGGCAATATTGATTACGAACTCATTTCAGTCAGC 462
||||||| |||||||| | ||||||||||||||||||| | ||||||||| || | ||
Sbjct 583 GATTGTCAACAATGGAGGACAATCCGAGGCAATATTGATGAGGAACTCATTCCAAACGGC 642
Query 463 CGGGCGGGGGTATGCATTGACGGAACTATTTACTACGTAGCAGTTAGAAGAAAAGATAAT 522
| ||||||||||||||||||||||||||||| ||||||||||||||||||||||| |||
Sbjct 643 CAAGCGGGGGTATGCATTGACGGAACTATTTATTACGTAGCAGTTAGAAGAAAAGA-AAT 701
Query 523 G-AGAATTATGGTG-AACTTTTCATGATGAGTTTCGACGTAAAGTCGGAAAGATTTTATC 580
| || ||||||| ||| | | ||| ||||||| ||||| | |||||||| ||||||||
Sbjct 702 GTTCAAATATGGTGAAAC-TATAATGCTGAGTTTTGACGTGAGGTCGGAAATATTTTATC 760
Query 581 ATGTCCGCACTCCTGAAACATTGTGGAGTCCCAAGTGTACTGAGCGAGGTCTTTTTAACC 640
||||||||||||||||| ||||||||||||||||||| | ||| |||| |||||| ||||
Sbjct 761 ATGTCCGCACTCCTGAAGCATTGTGGAGTCCCAAGTGGAATGATCGAGCTCTTTTCAACC 820
Query 641 ACCAAGGGAAGTTAGGATGCATAAGTAGCAACGAAAACAATATAAGTATGTGGATTATGG 700
||||||||||| ||||||||||||||| ||||||||||||| |||| ||||||||||||
Sbjct 821 ACCAAGGGAAGCTAGGATGCATAAGTAATAACGAAAACAATACAAGTGTGTGGATTATGG 880
Query 701 AGAATGCTGAGAAGCAAGAATGGTCCAACATTACTTTTGGCTTGCTTGAATACCCTGGAG 760
||||||||||||| ||||||||||||||||||||||||| ||||||||||||||||||||
Sbjct 881 AGAATGCTGAGAAACAAGAATGGTCCAACATTACTTTTGACTTGCTTGAATACCCTGGAG 940
Query 761 GTGATTTCAGAACTTTCTCAGGTAT 785
||||||||||||||||||||| |||
Sbjct 941 GTGATTTCAGAACTTTCTCAGTTAT 965
Score = 457 bits (247), Expect = 1e-127
Identities = 304/329 (92%), Gaps = 14/329 (4%)
Strand=Plus/Plus
Query 888 gaa-gagaaaaacagaggtcatgagaaaaggaaatgaagagaagaattaccgtgaagaag 946
||| |||||||||||||||||||||||||||||||||||| |||||||||||||||||||
Sbjct 1004 GAAGGAGAAAAACAGAGGTCATGAGAAAAGGAAATGAAGAAAAGAATTACCGTGAAGAAG 1063
Query 947 aaTATTTGCAACTCCCTCTGGATCTCATTGTGGAGATACTAAAGAAACTCCCGTTAAAGT 1006
||||||||||||| ||||||||||||||||||||||||||||||||||||||| |||||
Sbjct 1064 AATATTTGCAACTTCCTCTGGATCTCATTGTGGAGATACTAAAGAAACTCCCGGGAAAGT 1123
Query 1007 CACTTGTGA--GGTTCCGATGCGTCTCAAAGCAATTTTCAACGATTATCTGCAGCCT-AA 1063
||||||||| ||||||||||||||||||||||||| |||||||||||||||||| | ||
Sbjct 1124 CACTTGTGATCGGTTCCGATGCGTCTCAAAGCAATTGTCAACGATTATCTGCAGC-TGAA 1182
Query 1064 GAG-ACTT--C-ATCGAGTCGGTGGTTACTCGA-CATTTAGCTCAGCCGGGGCAGCAGCT 1118
||| | | ||||||||||| ||||||||| | ||||||||||||||||||||||||
Sbjct 1183 GAGGAAGAGACCATCGAGTCGGTCGTTACTCGATC-TTTAGCTCAGCCGGGGCAGCAGCT 1241
Query 1119 TCCCCTGTTGGCGGTCTTCCACCATTGTGTGCCTGAAACTTTCTTCACTGTCTCGTCTAG 1178
||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1242 TCCCCTGTTGG---TCTTCCACCATTGTGTGCCTGAAACTTTCTTCACTGTCTCGTCTAG 1298
Query 1179 TTTCTCCCAAAGCCTCAAACCCGCAATAT 1207
|||||| |||||||||||||||||| |||
Sbjct 1299 TTTCTCTCAAAGCCTCAAACCCGCAGTAT 1327
Score = 364 bits (197), Expect = 8e-100
Identities = 250/275 (91%), Gaps = 6/275 (2%)
Strand=Plus/Plus
Query 1 ATGGCTCGGTCTTTGAGACAGCCGCCTCATAAGCTTCCGGTCTTCATCTTCCACCAATGT 60
||| ||||||||||||||||||||||||||||||||||||||||||||||||||| |||
Sbjct 310 ATGTCTCGGTCTTTGAGACAGCCGCCTCATAAGCTTCCGGTCTTCATCTTCCACCGGTGT 369
Query 61 GATCCTGGAACTTTCTTCACCGTGTCGTCTACATTCTCTCAAAGCACAAAACCCAAAGTA 120
| |||| ||||| |||||||||||||||||||||||||| |||||||||||||||||||
Sbjct 370 GCGCCTGAAACTTCCTTCACCGTGTCGTCTACATTCTCTCTAAGCACAAAACCCAAAGTA 429
Query 121 TCAATAATGCCTGGACGAAACCACTATAATGCGTTCAGGTATCAATACGTTCGAGGCTTT 180
|||||||||||||||| |||| ||||| || ||||||||||||||||| | | |||||||
Sbjct 430 TCAATAATGCCTGGACCAAACAACTATTATTCGTTCAGGTATCAATACATCCAAGGCTTT 489
Query 181 ATATGTTGTTCTTCATCAGTATATGATTTGGTTACCATATACAACCCTACCACGAGGCAA 240
|| |||||||||||| ||||||||||| ||||||| ||||||||||||||||||||||||
Sbjct 490 ATCTGTTGTTCTTCACCAGTATATGATGTGGTTACGATATACAACCCTACCACGAGGCAA 549
Query 241 TGTC-TTCCTTTAC---CC-AAGATCGAATCAATG 270
|| | ||||||||| || |||||||||||||||
Sbjct 550 TG-CATTCCTTTACGTACCGAAGATCGAATCAATG 583
Score = 357 bits (193), Expect = 1e-97
Identities = 248/273 (91%), Gaps = 10/273 (4%)
Strand=Plus/Plus
Query 1204 ATATACAACCCTACCACGAAACGATCCGTTGGTTTACCTGAGATCGGACCCCCAGTA-AC 1262
|||||||||||||| |||| || ||||||||||||||| ||||||||| |||||| | ||
Sbjct 1417 ATATACAACCCTACAACGAGACAATCCGTTGGTTTACCCGAGATCGGAGCCCCAG-AGAC 1475
Query 1263 AGGGTTCCGGAAATGTAACTGTCTTTTTGGATACGATCCTGTCATGGATCAATACAAAGT 1322
|| ||||| ||||||||||||||||||||||||||| |||||||||||||||||||||||
Sbjct 1476 AGAGTTCCAGAAATGTAACTGTCTTTTTGGATACGACCCTGTCATGGATCAATACAAAGT 1535
Query 1323 GTTGTCCATGGTTTTTGATTTCCGAGAGCTTACGCAAACTTTTCATGTTTTCACATTGGG 1382
||||||||||||| ||||||| |||||||||||||||||||||||||||| |||||||||
Sbjct 1536 GTTGTCCATGGTTATTGATTTTCGAGAGCTTACGCAAACTTTTCATGTTTACACATTGGG 1595
Query 1383 ACAGAGTCAATCTTGGAGGAGAATCCAAGGCATT-A--ATG--ATG--GG-AAACTTTTT 1434
|||||||||||||||||||||||||||||||||| | ||| ||| || |||||||||
Sbjct 1596 ACAGAGTCAATCTTGGAGGAGAATCCAAGGCATTGATGATGCCATGATGGGAAACTTTTT 1655
Query 1435 CCAAGCGCCGTGGGGATTTGCATCGATGGGACT 1467
||||||||| |||| ||||| |||||||||||
Sbjct 1656 CCAAGCGCCAAGGGGGTTTGCGTCGATGGGACT 1688
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 57744811420
Database: halleri_transcript_ahg.fa
Posted date: Sep 25, 2014 2:02 AM
Number of letters in database: 38,939,717
Number of sequences in database: 32,672
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5