BLASTN 2.2.26+


Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.



Database: halleri_transcript_ahg.fa
           32,672 sequences; 38,939,717 total letters



Query= AT1G52500.2

Length=1491
                                                                      Score     E
Sequences producing significant alignments:                          (Bits)  Value

  Ahg891303 jgi|Araly1|891303|Al_scaffold_0007_3289                    483    2e-135
  Ahg474375 jgi|Araly1|474375|fgenesh2_kg.1__4329__AT1G52510.1         137    2e-31 


> Ahg891303 jgi|Araly1|891303|Al_scaffold_0007_3289
Length=327

 Score =  483 bits (261),  Expect = 2e-135
 Identities = 293/308 (95%), Gaps = 4/308 (1%)
 Strand=Plus/Plus

Query  290  GTATGGCTGGTGCTATTTATATCAAAGGCGTTGCAGTTACTAAGTATAAGAGGTCTGCTG  349
            ||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct  17   GTATGGCTGATGCTATTTATATCAAAGGCGTTGCAGTTACTAAGTATAAGAGGTCTGCTG  76

Query  350  TAAAGGACTCAGAGGAGTGGCCATCTAAGTATTCAAAGTTCTTCGTCGAGCTTGATGATG  409
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct  77   TAAAGGACTCAGAGGAGTGGCCATCTAAGTATTCAAAGTTCTTCGTCGAGCTTGATGATG  136

Query  410  GTCTGGAGCTTTC-ATTTACTGATAAGAGGAGATTTGCCAAAGTTCGACTTCTAGCAAAT  468
            ||||||||||||| ||| ||||||||||||||||| |||||||||||||||||||| |||
Sbjct  137  GTCTGGAGCTTTCCATT-ACTGATAAGAGGAGATTGGCCAAAGTTCGACTTCTAGCTAAT  195

Query  469  CCTACTTCTGTGAGTCCAATATCAGAGCTTGGTCCTGA-TGCATTGTTGGAGCCTATGAC  527
            || || |||||||| |||||||||||||||  ||| || ||||||||| |||||||||||
Sbjct  196  CCAACATCTGTGAGCCCAATATCAGAGCTTCATCC-GAATGCATTGTTAGAGCCTATGAC  254

Query  528  AGTTGATGAATTTGCAGAAAGCTTAGCTAAAAAGAAAATAACCATAAAACCTCTCCTACT  587
            |||||| ||||||||||||| |||||||||||||||||||||||||||||||||||||||
Sbjct  255  AGTTGAGGAATTTGCAGAAAACTTAGCTAAAAAGAAAATAACCATAAAACCTCTCCTACT  314

Query  588  TGATCAGG  595
            ||||||||
Sbjct  315  TGATCAGG  322


> Ahg474375 jgi|Araly1|474375|fgenesh2_kg.1__4329__AT1G52510.1
Length=1471

 Score =  137 bits (74),  Expect = 2e-31
 Identities = 78/80 (98%), Gaps = 0/80 (0%)
 Strand=Plus/Minus

Query  646   GCCAGAATCCACCCGTTGCAGACTGCTTCTAGCCTCTCCAAAGAGCAATGTGAAGCTTTG  705
             ||||||||||||||||||||| ||||||||||||| ||||||||||||||||||||||||
Sbjct  1286  GCCAGAATCCACCCGTTGCAGTCTGCTTCTAGCCTTTCCAAAGAGCAATGTGAAGCTTTG  1227

Query  706   CACACATCCATCAAAGAGGT  725
             ||||||||||||||||||||
Sbjct  1226  CACACATCCATCAAAGAGGT  1207


 Score =  104 bits (56),  Expect = 2e-21
 Identities = 68/74 (92%), Gaps = 0/74 (0%)
 Strand=Plus/Minus

Query  1384  ATTACCTCTGTCCTTTTTTGTTGTATTTGGAAGTCAGAAAAATGCTCGGAGGGCAGCAAC  1443
             ||||||| ||||||| |||| || |||||||||||||||||||||||||||||| |||||
Sbjct  1180  ATTACCTTTGTCCTTGTTTGGTGAATTTGGAAGTCAGAAAAATGCTCGGAGGGCTGCAAC  1121

Query  1444  TACTTTCTCTGGCC  1457
             ||||||||| ||||
Sbjct  1120  TACTTTCTCCGGCC  1107



Lambda     K      H
    1.33    0.621     1.12 

Gapped
Lambda     K      H
    1.28    0.460    0.850 

Effective search space used: 55802208925


  Database: halleri_transcript_ahg.fa
    Posted date:  Sep 25, 2014  2:02 AM
  Number of letters in database: 38,939,717
  Number of sequences in database:  32,672



Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5