BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: halleri_transcript_ahg.fa
32,672 sequences; 38,939,717 total letters
Query= AT1G52510.1
Length=1470
Score E
Sequences producing significant alignments: (Bits) Value
Ahg474375 jgi|Araly1|474375|fgenesh2_kg.1__4329__AT1G52510.1 2281 0.0
> Ahg474375 jgi|Araly1|474375|fgenesh2_kg.1__4329__AT1G52510.1
Length=1471
Score = 2281 bits (1235), Expect = 0.0
Identities = 1396/1473 (95%), Gaps = 13/1473 (1%)
Strand=Plus/Plus
Query 9 AAAAATGTCTTTGCTCTCTCCTCTTCCTCTGCTCCACTCATTCTCCTCCACCGTCGCCAC 68
|||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1 AAAAATGTCTCTGCTCTCTCCTCTTCCTCTGCTCCACTCATTCTCCTCCACCGTCGCCAC 60
Query 69 AAAATCCACCGCCTCTAGAATCACTGCCACGCCGTCGAAAATCCGCTTCTCTGTCATAAA 128
|||||||||||||||||||||||||||| | ||||||||| |||||||||| ||| | ||
Sbjct 61 AAAATCCACCGCCTCTAGAATCACTGCCTCTCCGTCGAAACTCCGCTTCTCCGTCGTCAA 120
Query 129 CGCCACGTCGGAGAATGGAAACAGCGGTGGTAGTAAAAACGATCGTGATGAGGATCCATC 188
||| ||| ||||||||||||||||||||||| ||||||| ||||||||||||||||| ||
Sbjct 121 CGCGACGCCGGAGAATGGAAACAGCGGTGGTCGTAAAAAAGATCGTGATGAGGATCCTTC 180
Query 189 TTTTAACCCATTTGGTTTCGTTACAGACAACCCGTCTAGCCGGAGTGCAATTCAGTTACC 248
||||||||||||||||||||||||||| || |||||||||||||||||||||||||||||
Sbjct 181 TTTTAACCCATTTGGTTTCGTTACAGATAATCCGTCTAGCCGGAGTGCAATTCAGTTACC 240
Query 249 AGAGTCTCCGGCGGAAGACGGCAATGTCGGCCAAATGCTCTACAGGACTGAAGATAAAGG 308
||||||||||| |||||||| || ||||| |||||||||||||||||||||||||||||
Sbjct 241 GGAGTCTCCGGCTGAAGACGGTAACGTCGGTCAAATGCTCTACAGGACTGAAGATAAAGG 300
Query 309 TAAAGAGTATGGCTCAACTATCAAATCTGGGAAGCTTAGATGGTTTGTGAGAGAGACTGG 368
|||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 301 TAAAGAGTATGGTTCAACTATCAAATCTGGGAAGCTTAGATGGTTTGTGAGAGAGACTGG 360
Query 369 ATCAAAGGAGAGTCGTCGAGGAACCATTGTATTTGTTCATGGAGCTCCTACTCAGTCTTT 428
|||||||||||||| |||||||||||||| |||||||||||||||||||||||||||||
Sbjct 361 GTCAAAGGAGAGTCGGCGAGGAACCATTGTTTTTGTTCATGGAGCTCCTACTCAGTCTTT 420
Query 429 TAGCTACAGAACTGTCATGTCTGAGTTGTCAGATGCTGGATTTCATTGCTTTGCACCTGA 488
||| ||| | || || ||||||||| ||||||||||||||||||||||||||||||||||
Sbjct 421 TAGTTACCGGACCGTTATGTCTGAGATGTCAGATGCTGGATTTCATTGCTTTGCACCTGA 480
Query 489 CTGGATAGGATTCGGATTCAGTGACAAACCGCAGCCTGGATACGGTTTTAATTACACAGA 548
||||||||| ||||||||||||||||| |||||||| |||||||||||||||||||||||
Sbjct 481 CTGGATAGGTTTCGGATTCAGTGACAAGCCGCAGCCGGGATACGGTTTTAATTACACAGA 540
Query 549 AAAAGAGTACCATGAGGCGTTTGATAAACTGCTTGAAGTGCTAGAGGTCAAATCTCCTTT 608
|||||||||||||||||| |||||||||||||| ||||||||||||||||||||||||||
Sbjct 541 AAAAGAGTACCATGAGGCATTTGATAAACTGCTGGAAGTGCTAGAGGTCAAATCTCCTTT 600
Query 609 CTTTCTTGTTGTTCAGGGATTTCTTGTAGGTTCATATGGTTTAACTTGGGCTTTGAAAAA 668
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 601 CTTTCTTGTTGTTCAGGGATTTCTTGTAGGTTCATATGGTTTAACTTGGGCTTTGAAAAA 660
Query 669 TCCAAGCAAGGTTGAGAAACTCGCGATCCTTAATAGTCCGCTGACCGTTTCATCCCCAGT 728
||||||||| ||||||||| ||||||||||||||||||| ||||||||||||||||||||
Sbjct 661 TCCAAGCAAAGTTGAGAAAATCGCGATCCTTAATAGTCCACTGACCGTTTCATCCCCAGT 720
Query 729 TCCCGGATTATTTAAGCAGCTGAGGATTCCCCTGTTTGGTGAATTCACCTGCCAAAATGC 788
|||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||
Sbjct 721 TCCCGGATTATTTAAGCAACTGAGGATTCCCCTGTTTGGTGAATTCACCTGCCAAAATGC 780
Query 789 TATCTTGGCCGAGCGGTTCATTGAAGGAGGTAGCCCCTACGTCCTGAAGAATGAGAAAGC 848
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 781 TATCTTGGCCGAGCGGTTCATTGAAGGAGGTAGCCCCTACGTCCTGAAGAATGAGAAAGC 840
Query 849 TGATGTGTATCGTCTACCATATTTGTCAAGCGGAGGGCCTGGCTTTGCCTTGCTCGAGAC 908
|||||| ||||||||||| ||||||||||||||||| ||||| |||||||||||||||||
Sbjct 841 TGATGTCTATCGTCTACCTTATTTGTCAAGCGGAGGACCTGGGTTTGCCTTGCTCGAGAC 900
Query 909 TGCGAAGAAGATCAACTTTGGAGACACATTGAGTCAAATTGCAAATGGGTTTTCATCAGG 968
|||||| |||||||||||||||||||| ||||||||||||||||||||||||||||| ||
Sbjct 901 TGCGAAAAAGATCAACTTTGGAGACACCTTGAGTCAAATTGCAAATGGGTTTTCATCGGG 960
Query 969 CAGCTGGGATAAACCTACGCTTCTGGCTTGGGGAATAGCTGATAAATATCTGCCTCAGTC 1028
|| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 961 CAACTGGGATAAACCTACGCTTCTGGCTTGGGGAATAGCTGATAAATATCTGCCTCAGTC 1020
Query 1029 TATAGCAGAGGAATTTGAGAAACAGAACCCCCAAAATGTTAAGCTTCGACTCATCGAAGG 1088
|||||||||||| |||||||||||||| ||||||||||| ||||||||||||||||||||
Sbjct 1021 TATAGCAGAGGAGTTTGAGAAACAGAATCCCCAAAATGTCAAGCTTCGACTCATCGAAGG 1080
Query 1089 TGCTGGGCATTTGCCTCAAGAAGACTGGCCAGAGAAAGTAGTTGCTGCCCTCCGAGCATT 1148
|||||||||||||||||||||||||||||| |||||||||||||| ||||||||||||||
Sbjct 1081 TGCTGGGCATTTGCCTCAAGAAGACTGGCCGGAGAAAGTAGTTGCAGCCCTCCGAGCATT 1140
Query 1149 TTTCTGACTTCCAAATACAACAAAAAAGGACAGAGGTACTGTTTTGGTGGGGTGTTT-A- 1206
|||||||||||||||| || |||| ||||||| ||||| |||||||||||| | ||| |
Sbjct 1141 TTTCTGACTTCCAAATTCACCAAACAAGGACAAAGGTAATGTTTTGGTGGGTT-TTTCAA 1199
Query 1207 GAGTCTTACCTCTTTGATGGATGTGTGCAAAGCTTCACATTGCTCTTTGGAGAGGCTAGA 1266
|| |||||||||||||||||||||||||||||||||||||||||||||||| ||||||||
Sbjct 1200 GAATCTTACCTCTTTGATGGATGTGTGCAAAGCTTCACATTGCTCTTTGGAAAGGCTAGA 1259
Query 1267 AGCAGTCTGCAACGGGTGGATTCTGGCCTGCGaaaaa-aaTAAACTAG-A-A-TTAATCG 1322
||||| ||||||||||||||||||||||||||||||| || ||||||| | | |||||||
Sbjct 1260 AGCAGACTGCAACGGGTGGATTCTGGCCTGCGAAAAACAA-AAACTAGTAGAATTAATCG 1318
Query 1323 TACAGCATGTAAACCCGTTTCTTCTGTCGTCAAATGTACAGA----AAA-CAAAAGTGGA 1377
||||||||||||||| |||||||||||||||||||||||||| ||| ||||||||||
Sbjct 1319 TACAGCATGTAAACCAGTTTCTTCTGTCGTCAAATGTACAGAGTTGAAAACAAAAGTGGA 1378
Query 1378 TACTTTGTGAATCAAATGAGTGGTTACATAGATGCTTTACTTCATTTCAAATGTAAATGT 1437
|||||||||||||||||||||||||||||||||||||||||||||||||| ||||| |||
Sbjct 1379 TACTTTGTGAATCAAATGAGTGGTTACATAGATGCTTTACTTCATTTCAAGTGTAAGTGT 1438
Query 1438 GTAAAGATCACTTACTTGGTACAGCACTTCATC 1470
|||||| ||||||||||||||||||||||||||
Sbjct 1439 GTAAAGCTCACTTACTTGGTACAGCACTTCATC 1471
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 55002313780
Database: halleri_transcript_ahg.fa
Posted date: Sep 25, 2014 2:02 AM
Number of letters in database: 38,939,717
Number of sequences in database: 32,672
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5