BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: halleri_transcript_ahg.fa
32,672 sequences; 38,939,717 total letters
Query= AT1G52530.1
Length=1216
Score E
Sequences producing significant alignments: (Bits) Value
Ahg474377 jgi|Araly1|474377|fgenesh2_kg.1__4331__AT1G52530.1 1524 0.0
> Ahg474377 jgi|Araly1|474377|fgenesh2_kg.1__4331__AT1G52530.1
Length=1062
Score = 1524 bits (825), Expect = 0.0
Identities = 927/977 (95%), Gaps = 4/977 (0%)
Strand=Plus/Plus
Query 198 GTGAAATGAAGTTCAAGGCGTTTCTGACTGAAAATGGTGTGAATCTCTTAGAGAAGAGGT 257
||||||||||||||||||||||||| |||||||||||||||||||| |||||||||||||
Sbjct 65 GTGAAATGAAGTTCAAGGCGTTTCTTACTGAAAATGGTGTGAATCTTTTAGAGAAGAGGT 124
Query 258 TTCTTCCAGCGTTTGACAAAATGGGGAAGAATTGTCATCTTCTTCTCACTAAAGAACACT 317
|||||||||| ||||||||||||||||||||||||||||||||||||||||||||||| |
Sbjct 125 TTCTTCCAGCATTTGACAAAATGGGGAAGAATTGTCATCTTCTTCTCACTAAAGAACATT 184
Query 318 TGTTCTTCCTCCATAACCTTCTCAATGGTGATGGAGTTCAATGCATTGCTCAGTTTCGCA 377
|||||||||| ||||| |||||||||||||||||||||||||||||||||||||||||||
Sbjct 185 TGTTCTTCCTTCATAATCTTCTCAATGGTGATGGAGTTCAATGCATTGCTCAGTTTCGCA 244
Query 378 AAGATGTTCTCTTTGATGATTACCGTATCTCGAGCCAGAACGAGGACCGTATCGCTTTCT 437
|||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||
Sbjct 245 AAGATGTTCTCTTTGATGATTACCGTATCTCGAGCCAGAACGAGGATCGTATCGCTTTCT 304
Query 438 CCTTAGATGTTGCTCTTCTGTATCGAGCGGTGAAGAGCAGTGTTAGTATTTGTACTGAGT 497
|||| |||||||||||||||||||||||||| ||||||||||||||||||||||||||||
Sbjct 305 CCTTGGATGTTGCTCTTCTGTATCGAGCGGTAAAGAGCAGTGTTAGTATTTGTACTGAGT 364
Query 498 TCAGTGGTGGATTAGCTTCAAACAGACTGCAGATCAAGCTTGTCAA-AAAGCTCCCTCCT 556
|||||||||| |||||||||||| || |||||||||| ||||| || ||| || ||||||
Sbjct 365 TCAGTGGTGGTTTAGCTTCAAACCGATTGCAGATCAAACTTGTGAAGAAA-CTGCCTCCT 423
Query 557 AACTGTACACAACCGATGCC-TTTCCTCACGTTTGAAACGAAAGGATACAAGTCTGCAGT 615
|||||||||||||||||||| ||| ||||| |||||||||||||||||||| ||||||||
Sbjct 424 AACTGTACACAACCGATGCCGTTT-CTCACTTTTGAAACGAAAGGATACAAATCTGCAGT 482
Query 616 TATTCAAGATGTTCCGATTACGAAACCGTTATCTCGGTCTCAAGTTATCGAGCTGCAGAC 675
||| ||||||||||||||| |||||||| | |||||||| |||||||| |||||||||||
Sbjct 483 TATACAAGATGTTCCGATTTCGAAACCGCTGTCTCGGTCCCAAGTTATTGAGCTGCAGAC 542
Query 676 TGCTCTTGACTCGGCTCAAGACCTTCCTCCGACTCTTGTTCAAGTTCAAGACTCGAATCA 735
||||||||||||||||||||| || ||||||||||||||||||||||||||| |||||||
Sbjct 543 TGCTCTTGACTCGGCTCAAGATCTGCCTCCGACTCTTGTTCAAGTTCAAGACCCGAATCA 602
Query 736 GTTACAGAACTTTGTTGATCATATGAGACATGTTGGTGATGTTCTTAATGTCACGATAAG 795
||||||||||||||| |||||||||||||||||||| ||||| |||||||| ||||||||
Sbjct 603 GTTACAGAACTTTGTGGATCATATGAGACATGTTGGGGATGTACTTAATGTTACGATAAG 662
Query 796 CAAGCACGGTGATCTGCAAGTGCAAGTCTCAACGACTTTGATTAGGCTTGGTATTGAGTT 855
|||||| |||||| ||||||||||| |||| |||||||||||||||||||||| ||||||
Sbjct 663 CAAGCATGGTGATTTGCAAGTGCAAATCTCGACGACTTTGATTAGGCTTGGTACTGAGTT 722
Query 856 CCAGAGGCTTTCGGTTATTGGTGAGAAATCTCAGGCTCCTGTTGAAGATAGGAACTTAAG 915
||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||
Sbjct 723 CCAGAGGCTTTCGGTTATTGGCGAGAAATCTCAGGCTCCTGTTGAAGATAGGAACTTAAG 782
Query 916 TGCTCAGGCTCGTTCAGAGAGAGCTATTGCTAGAGGAGATGCTCAGTCTGTGCAAGTGAG 975
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 783 TGCTCAGGCTCGTTCAGAGAGAGCTATTGCTAGAGGAGATGCTCAGTCTGTGCAAGTGAG 842
Query 976 TGTAAAACATTTTTCAAAGAGCCTTCAATGTCACTTAACTAAACCAGATTCTACTTTCTA 1035
||||||||| ||||||||||||||||||||||||||||| |||||| ||||| |||||||
Sbjct 843 TGTAAAACACTTTTCAAAGAGCCTTCAATGTCACTTAACCAAACCAAATTCTGCTTTCTA 902
Query 1036 TGGGATTGCTCCTCAAGGTGCTTGCTTGACAGTGATCTTCCAGTTCATGGTTCCCGGAAC 1095
|||||||||||||||||||||||| |||||||||||||||||||||||||||||||| ||
Sbjct 903 TGGGATTGCTCCTCAAGGTGCTTGTTTGACAGTGATCTTCCAGTTCATGGTTCCCGGGAC 962
Query 1096 TCGTCAAACCGATAAATCAATCAGTTTGCATTGCCGACTTCCCGTGCTTGACCCAGGGTC 1155
|||||||||||||||||||||||||||||||||||| |||||||| || |||||||| ||
Sbjct 963 TCGTCAAACCGATAAATCAATCAGTTTGCATTGCCGTCTTCCCGTTCTGGACCCAGGATC 1022
Query 1156 CAACTGAATCTTCATCA 1172
|||||||||||||||||
Sbjct 1023 CAACTGAATCTTCATCA 1039
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 45404394147
Database: halleri_transcript_ahg.fa
Posted date: Sep 25, 2014 2:02 AM
Number of letters in database: 38,939,717
Number of sequences in database: 32,672
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5