BLASTN 2.2.26+


Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.



Database: halleri_transcript_ahg.fa
           32,672 sequences; 38,939,717 total letters



Query= AT1G52550.1

Length=685
                                                                      Score     E
Sequences producing significant alignments:                          (Bits)  Value

  Ahg923776 jgi|Araly1|923776|scaffold_105057.1                        592    2e-168


> Ahg923776 jgi|Araly1|923776|scaffold_105057.1
Length=439

 Score =  592 bits (320),  Expect = 2e-168
 Identities = 401/440 (91%), Gaps = 5/440 (1%)
 Strand=Plus/Plus

Query  13   AAAATACCTTGTGAAGAAAATGGCGACGGCGTTTGCCAACACGACTTCAAGCTCCAACCT  72
            |||| | ||||||||||||||||||||  ||||| ||||||||  |||||||||||||||
Sbjct  4    AAAAAATCTTGTGAAGAAAATGGCGACAACGTTTTCCAACACGGGTTCAAGCTCCAACCT  63

Query  73   TTACCTCCATCGCTGCCGTAAAAACCATCCTCTTCCATCTCCGTCGTTCTTTTCACCGTT  132
            ||||||||||||||||||| |||||||| |||||||||||||||||  ||||||||||||
Sbjct  64   TTACCTCCATCGCTGCCGTCAAAACCATTCTCTTCCATCTCCGTCGCGCTTTTCACCGTT  123

Query  133  CCGGTCGTCTCCACTTCCTTCTCAGACCCTTTTCCTCGTCCCCACTCCAAAACC-TGTAC  191
            |||||||||||  |||| | |||||||||| ||||||||| | |||||   |||  ||||
Sbjct  124  CCGGTCGTCTCGGCTTCATCCTCAGACCCTCTTCCTCGTCGCAACTCC-CGACCGCGTAC  182

Query  192  GACGCATCGCGGTCGCTCCTCTCGGCCCTCCAACGCCGCCTAGTCCCGACCCACCTCCGC  251
            |||||||||| ||||||||||||||||||||||| ||||||| ||||||||||||||| |
Sbjct  183  GACGCATCGCCGTCGCTCCTCTCGGCCCTCCAACACCGCCTACTCCCGACCCACCTCCAC  242

Query  252  CTAAAAACACGACTGAGCTCACAAGTCTTGTGGGAGTAGCGTCGATGATTCAAGACCGTG  311
            |||||||||||||||||||||||||| |||||||| |||| |||||||||||||||||||
Sbjct  243  CTAAAAACACGACTGAGCTCACAAGTATTGTGGGACTAGCATCGATGATTCAAGACCGTG  302

Query  312  TAAAGATCTTTCTTTCAGTACTAATTTGGATCTCTCTCTTCTTTTGGGCTTCGGCTTTAC  371
            ||||||||||||||||||||||||||||||||||||||||||| |||||||| || ||||
Sbjct  303  TAAAGATCTTTCTTTCAGTACTAATTTGGATCTCTCTCTTCTTCTGGGCTTCAGCATTAC  362

Query  372  AAGGAAGAGGCAGCAAAGGTAATGGTAAAGGGAAGAAGGGTTCACGCTTCAAATAGTATT  431
            ||||||||||||  || || |||||||||||||||||||||||||| |||||||||||||
Sbjct  363  AAGGAAGAGGCA--AA-GGAAATGGTAAAGGGAAGAAGGGTTCACGATTCAAATAGTATT  419

Query  432  AGTTAGATTGGTGTGGtgat  451
            |||||| |||||||||||||
Sbjct  420  AGTTAGGTTGGTGTGGTGAT  439



Lambda     K      H
    1.33    0.621     1.12 

Gapped
Lambda     K      H
    1.28    0.460    0.850 

Effective search space used: 25161125220


  Database: halleri_transcript_ahg.fa
    Posted date:  Sep 25, 2014  2:02 AM
  Number of letters in database: 38,939,717
  Number of sequences in database:  32,672



Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5