BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: halleri_transcript_ahg.fa
32,672 sequences; 38,939,717 total letters
Query= AT1G52560.1
Length=822
Score E
Sequences producing significant alignments: (Bits) Value
Ahg337408 jgi|Araly1|337408|fgenesh1_pg.C_scaffold_1003973 1062 0.0
> Ahg337408 jgi|Araly1|337408|fgenesh1_pg.C_scaffold_1003973
Length=699
Score = 1062 bits (575), Expect = 0.0
Identities = 660/701 (94%), Gaps = 6/701 (1%)
Strand=Plus/Plus
Query 101 ATGGCTCTAGCTCGTCTGGCTTTGAGAAACCTTCAACAAAAACTGTCTCCTAGTTTGATG 160
|||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||
Sbjct 1 ATGGCTCTAGCTCGTCTGGCTTTGAGAAACCTTCAACAAAAACTGTCTCCTAGTCTGATG 60
Query 161 GGTCAATCTTGTGAAAGAG-GTTTGGTCGGAAATCGACATAATCCAATGAAGCTAAACAG 219
||||||||||||||||| | ||||||| ||||||||||||||||||||||||||||||||
Sbjct 61 GGTCAATCTTGTGAAAG-GTGTTTGGTAGGAAATCGACATAATCCAATGAAGCTAAACAG 119
Query 220 ATTCATGGCTACTTCGGCTGGTGAACAAGAGGATAAGATGAACACAGAAGTGAGTGTGTC 279
|||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||
Sbjct 120 ATTCATGGCTACTTCGGCTGGTGAACAAGAGGATAAGAAGAACACAGAAGTGAGTGTGTC 179
Query 280 TGAGAAGAAATCTCCTCGACAGAATTTCCCCCGGAGACGTGGCCGAAAAAGCCTCTGGCG 339
|||||||||||||||||| | ||| |||||||||||||||||||| ||||| ||||||||
Sbjct 180 TGAGAAGAAATCTCCTCGGCGGAACTTCCCCCGGAGACGTGGCCGGAAAAGTCTCTGGCG 239
Query 340 TAACACCGACGATCATGGCTACTTCACTCCCACCCTAAATGAGTTCTTTCCTCCGACTAT 399
|||||| |||||||||||||||||| ||||||||||||||||||||||||||||||| |
Sbjct 240 TAACACTGACGATCATGGCTACTTCGTTCCCACCCTAAATGAGTTCTTTCCTCCGACTCT 299
Query 400 AGGAAATACTCTGATACAAGCAACAGAGAATATGAACAGAATTTTCGACAACTTCAACGT 459
||||||| ||||||| |||||||||| ||| || |||||||| ||||||||||||||| |
Sbjct 300 AGGAAATGCTCTGATGCAAGCAACAGGGAACATAAACAGAATCTTCGACAACTTCAACAT 359
Query 460 GA-ATCCATTC-CAACTAATGGGTCAAGTGAAAGAGCAAGACGACTGTTACAAGCTCAGA 517
| | |||| | ||||||||||||||||||||||||||||||||||||||||| ||||||
Sbjct 360 TAGA-CCAT-CACAACTAATGGGTCAAGTGAAAGAGCAAGACGACTGTTACAAACTCAGA 417
Query 518 TACGAGGTTCCAGGGCTAACCAAAGAAGACGTGAAGATCACGGTAAATGATGGAATCTTG 577
|||||||||||||||||||||||||| |||||||||||||||||| ||||||| ||||||
Sbjct 418 TACGAGGTTCCAGGGCTAACCAAAGATGACGTGAAGATCACGGTAGATGATGGGATCTTG 477
Query 578 ACGATTAAAGGAGATCACAAGGCGGAGGAAGAGAAAGGCTCACCTGAGGAAGACGAGTAC 637
|||||||||||||| ||||||||||||||||| |||||||||||||| ||||||||||||
Sbjct 478 ACGATTAAAGGAGAACACAAGGCGGAGGAAGAAAAAGGCTCACCTGAAGAAGACGAGTAC 537
Query 638 TGGTCTTCAAAGAGTTATGGTTACTACAACACGAGCTTATCGTTGCCTGATGATGCTAAG 697
|||||||| ||||||||||||||||||||||||||||| |||||||||||||||||||||
Sbjct 538 TGGTCTTCCAAGAGTTATGGTTACTACAACACGAGCTTGTCGTTGCCTGATGATGCTAAG 597
Query 698 GTTGAGGACATTAAGGCGGAGCTCAAGAATGGTGTGCTTAATCTTGTGATTCCTAGGACG 757
||||| || || || || ||||||||||||||||||||||||||||||||||||||||||
Sbjct 598 GTTGATGATATCAAAGCAGAGCTCAAGAATGGTGTGCTTAATCTTGTGATTCCTAGGACG 657
Query 758 GAGAAGCCAAAGAAGAATGTTCAGGAGATTTCTGTTGAGTA 798
||||||||||||||| |||||||||||||||||||||||||
Sbjct 658 GAGAAGCCAAAGAAGGATGTTCAGGAGATTTCTGTTGAGTA 698
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 30383964849
Database: halleri_transcript_ahg.fa
Posted date: Sep 25, 2014 2:02 AM
Number of letters in database: 38,939,717
Number of sequences in database: 32,672
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5