BLASTN 2.2.26+


Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.



Database: halleri_transcript_ahg.fa
           32,672 sequences; 38,939,717 total letters



Query= AT1G52565.1

Length=740
                                                                      Score     E
Sequences producing significant alignments:                          (Bits)  Value

  Ahg337410 jgi|Araly1|337410|fgenesh1_pg.C_scaffold_1003975           632    0.0  


> Ahg337410 jgi|Araly1|337410|fgenesh1_pg.C_scaffold_1003975
Length=396

 Score =  632 bits (342),  Expect = 0.0
 Identities = 380/397 (96%), Gaps = 8/397 (2%)
 Strand=Plus/Plus

Query  176  ATGACTTGTATACTAAGCTGTTCTCATGGCGTCGTGATCGCAACCGCCATGGTTTTCTCA  235
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct  1    ATGACTTGTATACTAAGCTGTTCTCATGGCGTCGTGATCGCAACCGCCATGGTTTTCTCA  60

Query  236  AGCACTGCTCTGTTTCTTGCGATTTCCCGCCAATTTTCTGGAAATCAGACATCAGATCAA  295
            || |||||||||||||||||||||||||||||||| ||||||||||||||||||||||||
Sbjct  61   AGTACTGCTCTGTTTCTTGCGATTTCCCGCCAATTCTCTGGAAATCAGACATCAGATCAA  120

Query  296  CAAATCCTCCGTTCTTGTCTTTCTTCagaggaaaagaagaaacagaggaagaataagaag  355
            |||||||| ||||||||||||||||||||||||||||||| |||||||||||||||||||
Sbjct  121  CAAATCCTTCGTTCTTGTCTTTCTTCAGAGGAAAAGAAGAGACAGAGGAAGAATAAGAAG  180

Query  356  aagaaagtgaaatttgcagagaatgtgaaagagacgaaagGTAACGGTGAAGAGTATCGT  415
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct  181  AAGAAAGTGAAATTTGCAGAGAATGTGAAAGAGACGAAAGGTAACGGTGAAGAGTATCGT  240

Query  416  AAGAAGAG------TCTTCGGCGAATTGTACCGGAACAGATGATTAAACCTGA-GAAAAC  468
            ||||||||      ||||||| |||||||||||||||||||||||||||| || ||| ||
Sbjct  241  AAGAAGAGGGAACGTCTTCGGAGAATTGTACCGGAACAGATGATTAAACC-GAAGAAGAC  299

Query  469  CGGTTCGGTTTGTAGAAACGACATGCCTGCTAACCGGATTGCATTGTACAATGGGATTCT  528
            ||||||||||||||||||| |||||||||||||||||||||| |||||||| ||||||||
Sbjct  300  CGGTTCGGTTTGTAGAAACAACATGCCTGCTAACCGGATTGCTTTGTACAACGGGATTCT  359

Query  529  TAGAGACAGAGATCATCGAATTCAGTGCTCCTATTGA  565
            |||||||||||||||||||||||||||||||||||||
Sbjct  360  TAGAGACAGAGATCATCGAATTCAGTGCTCCTATTGA  396



Lambda     K      H
    1.33    0.621     1.12 

Gapped
Lambda     K      H
    1.28    0.460    0.850 

Effective search space used: 27257885655


  Database: halleri_transcript_ahg.fa
    Posted date:  Sep 25, 2014  2:02 AM
  Number of letters in database: 38,939,717
  Number of sequences in database:  32,672



Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5