BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: halleri_transcript_ahg.fa
32,672 sequences; 38,939,717 total letters
Query= AT1G52570.1
Length=2470
Score E
Sequences producing significant alignments: (Bits) Value
Ahg914427 jgi|Araly1|914427|Al_scaffold_0001_4681 4045 0.0
Ahg479029 jgi|Araly1|479029|fgenesh2_kg.3__1730__AT3G15730.1 2067 0.0
> Ahg914427 jgi|Araly1|914427|Al_scaffold_0001_4681
Length=2433
Score = 4045 bits (2190), Expect = 0.0
Identities = 2353/2434 (97%), Gaps = 2/2434 (0%)
Strand=Plus/Plus
Query 38 ATGGAAGAGTGTTTGTTACATGGAAGATTGCACGCGACAATCTACGAAGTTGATCATCTC 97
|||||||||| ||||||||||||||||||||||||||||||||| |||||||||| ||||
Sbjct 1 ATGGAAGAGTTTTTGTTACATGGAAGATTGCACGCGACAATCTATGAAGTTGATCGTCTC 60
Query 98 CATGCTGAAGGAGGTAGATCAGGTTTCTTAGGATCGATACTAGCAAATGTAGAAGAAACA 157
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 61 CATGCTGAAGGAGGTAGATCAGGTTTCTTAGGATCGATACTAGCAAATGTAGAAGAAACA 120
Query 158 ATCGGTGTTGGCAAAGGAGAAACTCAGCTTTACGCTACAATCGATCTTGAGAAAGCAAGA 217
|| ||||||||||||||||||||||||||||||||||||||||||||||||||||| |||
Sbjct 121 ATTGGTGTTGGCAAAGGAGAAACTCAGCTTTACGCTACAATCGATCTTGAGAAAGCGAGA 180
Query 218 GTTGGAAGAACGAGGAAAATAACAAAGGAGCCAAAAAACCCAAAGTGGTTTGAGTCTTTT 277
||||||||||| ||||||||||||||||||||||||||||||||||||||||| ||||||
Sbjct 181 GTTGGAAGAACAAGGAAAATAACAAAGGAGCCAAAAAACCCAAAGTGGTTTGAATCTTTT 240
Query 278 CATATTTACTGTGGTCACATGGCTAAACATGTTATTTTCACTGTTAAGGATGCTAATCCG 337
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 241 CATATTTACTGTGGTCACATGGCTAAACATGTTATTTTCACTGTTAAGGATGCTAATCCG 300
Query 338 ATTGGCGCGACGTTGATCGGAAGAGGTTATATTCCTGTGGAAGATATTTTGCATGGAGAA 397
|||||||| ||| |||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 301 ATTGGCGCTACGCTGATCGGAAGAGGTTATATTCCTGTGGAAGATATTTTGCATGGAGAA 360
Query 398 GAAGTTGATAGATGGGTTGATATCTTAGATAATGAGAAAAACCCAATTGCTGGAGGATCA 457
|||||||| |||||||||||||||||||||||||| |||||||| |||||||||||||||
Sbjct 361 GAAGTTGACAGATGGGTTGATATCTTAGATAATGATAAAAACCCCATTGCTGGAGGATCA 420
Query 458 AAGATCCATGTGAAACTCCAATATTTCGGTGTTGAAAAGGATAAAAACTGGAATCGTGGT 517
||||||||||||||||||||||||||||||||||| |||||||||||||||||||| |||
Sbjct 421 AAGATCCATGTGAAACTCCAATATTTCGGTGTTGAGAAGGATAAAAACTGGAATCGAGGT 480
Query 518 ATCAAAAGTGCTAAGTTTCCAGGAGTTCCTTACACATTCTTCTCTCAGAGGAGAGGCTGC 577
|||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||
Sbjct 481 ATCAAAAGTGCTAAGTTTCCAGGAGTTCCTTACACATTCTTCTCTCAGAGAAGAGGCTGC 540
Query 578 AAAGTTTCTTTGTATCAAGATGCTCATATCCCTGGAAACTTTGTCCCGAAAATCCCTCTT 637
||||||||| ||||||||||||||||||| ||||||||||||||||| |||||||||||
Sbjct 541 AAAGTTTCTCTGTATCAAGATGCTCATATTCCTGGAAACTTTGTCCCAAAAATCCCTCTC 600
Query 638 GCGGGAGGGAAAAACTACGAGCCACATCGATGTTGGGAGGATATTTTCGATGCAATTACT 697
||||| || ||||||||||||||| ||||||||||||||||||||||||||| ||||||
Sbjct 601 GCGGGTGGAAAAAACTACGAGCCAGGTCGATGTTGGGAGGATATTTTCGATGCCATTACT 660
Query 698 AATGCTAAACACTTGATTTACATTACTGGTTGGTCTGTTTACACTGAGATTTCTTTAGTG 757
||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 661 AATGCAAAACACTTGATTTACATTACTGGTTGGTCTGTTTACACTGAGATTTCTTTAGTG 720
Query 758 AGGGACTCGAGGAGGCCAAAACAAGGAGGAGATGTGACTGTTGGTGAGCTACTCAAGAAG 817
|||||||||||||||||||||||||||||||||||||| |||||||||||||||||||
Sbjct 721 AGGGACTCGAGGAGGCCAAAACAAGGAGGAGATGTGACCATTGGTGAGCTACTCAAGAAA 780
Query 818 AAAGCTAGTGAAGGTGTTAAGGTTATTTTGCTTGTTTGGGATGACAGAACATCAGTTGAT 877
||||||||||||||||||||||| |||||||||||||||||||||||||| || ||||||
Sbjct 781 AAAGCTAGTGAAGGTGTTAAGGTAATTTTGCTTGTTTGGGATGACAGAACGTCTGTTGAT 840
Query 878 TTGCTGAAAAAAGATGGACTTATGGCTACTCATGATGAGGAAACTGAGAATTTTTTCAGA 937
|||||||||||||||||||||||||| ||||||||||| |||||||||||||||||||||
Sbjct 841 TTGCTGAAAAAAGATGGACTTATGGCCACTCATGATGAAGAAACTGAGAATTTTTTCAGA 900
Query 938 GGAACCGACGTGAACTGTATTTTGTGTCCTCGTAACCCTGATGATGGTGGAAGCATTGTC 997
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 901 GGAACCGACGTGAACTGTATTTTGTGTCCTCGTAACCCTGATGATGGTGGAAGCATTGTC 960
Query 998 CAAAACTTGCAAATCTCAACTATGTTCACTCATCACCAAAAGATTGTTGTTGTAGACAGT 1057
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 961 CAAAACTTGCAAATCTCAACTATGTTCACTCATCACCAAAAGATTGTTGTTGTAGACAGT 1020
Query 1058 GAAATGCCGAGTGGAGGATCAAGATCCAGAAGAATAGTGAGTTTTGTTGGTGGTCTTGAT 1117
|||||||| ||||||||||||||||| |||||||| ||||||||||||||||||||||||
Sbjct 1021 GAAATGCCAAGTGGAGGATCAAGATCAAGAAGAATTGTGAGTTTTGTTGGTGGTCTTGAT 1080
Query 1118 CTTTGTGATGGAAGATATGACACTCCGTTTCACTCCTTGTTTAGAACGTTGGACACTGCC 1177
|||||||||||||||||||||||||| |||||||||||||||||||| ||||||||||||
Sbjct 1081 CTTTGTGATGGAAGATATGACACTCCATTTCACTCCTTGTTTAGAACATTGGACACTGCC 1140
Query 1178 CATCACGATGACTTCCATCAACCGAATTTCACTGGCGCTGCGATAACCAAAGGTGGTCCT 1237
||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||
Sbjct 1141 CATCACGATGACTTCCATCAACCGAATTTCACTGGCGCTGCGATAACCAAAGGCGGTCCT 1200
Query 1238 AGAGAGCCATGGCATGATATTCATTGTCGTCTTGAAGGACCTATTGCTTGGGATGTCTTG 1297
||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||
Sbjct 1201 AGAGAGCCATGGCATGACATTCATTGTCGTCTTGAAGGACCTATTGCTTGGGATGTCTTG 1260
Query 1298 TATAATTTTGAGCAGAGATGGAGTAGACAAGGCGGTAAAGATATTTTGGTTAAAATGAGA 1357
|||||||||||||||||||||||||||||||| ||||||||||||||||||||||| |||
Sbjct 1261 TATAATTTTGAGCAGAGATGGAGTAGACAAGGTGGTAAAGATATTTTGGTTAAAATAAGA 1320
Query 1358 GAACTCGGAGATATTATCATCCCGCCTTCTCCCGTTCTGTTCTCAGAGGATCATGACGTG 1417
|| || || ||||||||||||||||||||||| ||| ||||||| |||||||| || |||
Sbjct 1321 GATCTAGGTGATATTATCATCCCGCCTTCTCCTGTTTTGTTCTCGGAGGATCACGATGTG 1380
Query 1418 TGGAATGTTCAGTTGTTTAGATCCATTGATGGTGGAGCAGCTGCTGGATTTCCTGACTCC 1477
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1381 TGGAATGTTCAGTTGTTTAGATCCATTGATGGTGGAGCAGCTGCTGGATTTCCTGACTCA 1440
Query 1478 CCTGAAGCTGCAGCGGAAGCAGGTCTTGTGAGTGGAAAAGATAATATAATTGATAGGAGT 1537
|||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||
Sbjct 1441 CCTGAAGCTGCAGCGGAAGCAGGTCTTGTGAGCGGAAAAGATAATATAATTGATAGGAGT 1500
Query 1538 ATTCAAGATGCTTACATTCACGCGATTAGACGAGCTAAAGACTTCATCTATATCGAAAAC 1597
||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||
Sbjct 1501 ATTCAAGATGCTTACATTCACGCGATTAGACGAGCTAAAGATTTCATCTATATCGAAAAC 1560
Query 1598 CAGTACTTCCTTGGAAGCTCTTTTGCTTGGAGCGCGGATGGAATCAAACCAGAGGAAATC 1657
||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||
Sbjct 1561 CAGTACTTCCTTGGAAGCTCTTTTGCTTGGAGCGCTGATGGAATCAAACCAGAGGAAATC 1620
Query 1658 AATGCTCTGCATCTGATTCCGAAGGAGCTATCTTTGAAGATTGTTAGCAAAATCAAAGCA 1717
|||||||||||| ||||||| ||||||||||||||||||||||||||||| |||||||||
Sbjct 1621 AATGCTCTGCATTTGATTCCAAAGGAGCTATCTTTGAAGATTGTTAGCAAGATCAAAGCA 1680
Query 1718 GGAGAGAAGTTTAAGGTCTATGTTGTTGTTCCAATGTGGCCTGAAGGGATTCCTGAGAGT 1777
|| |||||||||||||||||||||||||||||||||||||||||||| ||||||||||||
Sbjct 1681 GGGGAGAAGTTTAAGGTCTATGTTGTTGTTCCAATGTGGCCTGAAGGCATTCCTGAGAGT 1740
Query 1778 GGATCAGTCCAAGCTATATTAGATTGGCAGAAAAGAACAATGGAGATGATGTACAAAGAT 1837
|||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||
Sbjct 1741 GGATCAGTCCAAGCTATATTGGATTGGCAGAAAAGAACAATGGAGATGATGTACAAAGAT 1800
Query 1838 GTAATCAAGGCACTTAGAGAAAATGGACTTGAGGGAGAGGATCCGCGAGATTATCTGACA 1897
|||||||||||||||||||||| ||||| |||||||||||||||||||||||||| |||
Sbjct 1801 GTAATCAAGGCACTTAGAGAAACGGGACTCGAGGGAGAGGATCCGCGAGATTATCTAACA 1860
Query 1898 TTCTTCTGCCTCGGTAACCGAGAGGTCAAGAAAGATGGAGAGTATGAGCCTTCAGAGAAA 1957
|||||||||||||| |||||||| |||||||| |||||||||||||||||||||||||||
Sbjct 1861 TTCTTCTGCCTCGGAAACCGAGAAGTCAAGAAGGATGGAGAGTATGAGCCTTCAGAGAAA 1920
Query 1958 CCTGAACCGGACACTGACTATATCCGAGCACAAGAAGCACGCCGCTTCATGATCTATGTT 2017
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1921 CCTGAACCGGACACTGACTATATCCGAGCACAAGAAGCACGCCGCTTCATGATCTATGTT 1980
Query 2018 CACACTAAAATGATGATAGTTGACGATGAGTACATTATAATCGGATCAGCAAATATCAAC 2077
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1981 CACACTAAAATGATGATAGTTGACGATGAGTACATTATAATCGGATCAGCAAATATCAAC 2040
Query 2078 CAGAGGTCAATGGATGGTGCAAGAGACTCAGAGATAGCAATGGGAGGCTATCAACCATAT 2137
|||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||
Sbjct 2041 CAGAGGTCAATGGATGGTGCAAGAGACTCAGAGATAGCGATGGGAGGCTATCAACCATAT 2100
Query 2138 CATCTCTCAACAAGACAACCAGCTCGAGGTCAAATCCATGGATTCCGCATGTCTTTATGG 2197
||||| || |||||||||||||||||||||||||||||||||||||||||||| || |||
Sbjct 2101 CATCTATCCACAAGACAACCAGCTCGAGGTCAAATCCATGGATTCCGCATGTCGTTGTGG 2160
Query 2198 TATGAACATTTAGGAATGCTCGATGAAACATTCCTCGATCCATCGAGCCAAGAATGTATC 2257
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 2161 TATGAACATTTAGGAATGCTCGATGAAACATTCCTCGATCCATCGAGCCAAGAATGTATC 2220
Query 2258 CAGAAAGTCAACCGTGTTGCTGATAAGTATTGGGATCTTTACTCAAGTGAGTCACTTGAA 2317
|| ||||| |||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 2221 CAAAAAGTTAACCGTGTTGCTGATAAGTATTGGGATCTTTACTCAAGTGAGTCACTTGAA 2280
Query 2318 CATGATCTTCCTGGTCATCTACTTCGCTACCCGATCGGTATTGCTAGTGAAGGGAACATC 2377
||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 2281 CATGATCTTCCCGGTCATCTACTTCGCTACCCGATCGGTATTGCTAGTGAAGGGAACATC 2340
Query 2378 ACTGAGCTTCCCGGATGTGAATTCTTTCCCGACACAAAAGCTCGTATCCTCGGTG-TCAA 2436
|||||||||||| |||||||||||||||||||||||||||| |||||||| |||| | ||
Sbjct 2341 ACTGAGCTTCCCAGATGTGAATTCTTTCCCGACACAAAAGCCCGTATCCTTGGTGCT-AA 2399
Query 2437 ATCTGATTACATGCCTCCAATTCTTACAACCTAA 2470
|||||||||||||||||| |||||||||||||||
Sbjct 2400 ATCTGATTACATGCCTCCCATTCTTACAACCTAA 2433
> Ahg479029 jgi|Araly1|479029|fgenesh2_kg.3__1730__AT3G15730.1
Length=2782
Score = 2067 bits (1119), Expect = 0.0
Identities = 2006/2433 (82%), Gaps = 66/2433 (3%)
Strand=Plus/Plus
Query 71 GCGACAATCTACGAAGTTGAT-CATCTCCATGCTGAAGGAGGT-AGATC-AGG-TTTCTT 126
||||||||||| ||||||||| | ||||||| || ||| || || | ||| || |||
Sbjct 127 GCGACAATCTATGAAGTTGATGC-CCTCCATGGTGGTGGA-GTCAG-GCAAGGCTTCCTT 183
Query 127 AGG-ATCGATACTAGCAAATGTAGAAGAAACAATCGGTGTTGGCAAAGGAGAAACTCAGC 185
|| | ||| || |||||||||||||| || || |||||||||||||||||||| |||
Sbjct 184 -GGCA-AGATTCTGGCAAATGTAGAAGAGACGATTGGTGTTGGCAAAGGAGAAACGCAG- 240
Query 186 TT-TACGCTACAATCGATCTTG-AGAAAGCAAGAGTTGGAAGAACGAGGAAAAT-AACAA 242
|| || || || || |||| || | ||||| |||||||| ||||| ||||| || || ||
Sbjct 241 TTGTATGCGACGATTGATC-TGCAAAAAGCTAGAGTTGGGAGAACCAGGAAGATCAA-AA 298
Query 243 AGGAGCCAAAAAACCCAAAGTGGTTTGAGTCTTTTCATATTTACTGTGGTCACATGGCTA 302
| || || | ||||||||||||| ||| || |||||||||||||||| ||| |||||
Sbjct 299 ATGAACCTACGAACCCAAAGTGGTATGAATCGTTTCATATTTACTGTGCCCACTTGGCTT 358
Query 303 AACATGTTATTTTCACTGTTAAGGATGCTAATCCGATTGGCGCGA-CGTTGATCGGAAGA 361
|| | || ||||||||||| |||| |||||| ||||| || | | || |||||||||
Sbjct 359 CTGATATCATCTTCACTGTTAAAGATGATAATCCCATTGGGGCCACCCTT-ATCGGAAGA 417
Query 362 GGTTATATTCCTGTGGAAGATA-T-TTTGCATGGAGAAGAAGTTGATAGATGGGTTGATA 419
| || |||||||| || || | | || |||| || ||||| ||| | |||||||| |
Sbjct 418 GCATACATTCCTGTTGACGA-AGTCGTT-AATGGCGAGGAAGTGGATCGGTGGGTTGAGA 475
Query 420 TCTTAGATAATGAGAAAAACCCAATTGC-TGGAGGATCAAAGATCCATGTGAAACTCCAA 478
|||| |||||||| | |||||| | | | |||||||||||||| ||||| || ||||||
Sbjct 476 TCTTGGATAATGACAGAAACCCCA-TCCAGGGAGGATCAAAGATTCATGTCAAGCTCCAA 534
Query 479 TATTTCGGTGTTGAAAAGGATAAAAACTGGAAT-CGTGGTATCAAAAGTGCTAAGTTTCC 537
|||||| |||||| ||||| ||||||||| | ||||||||||||||||| || ||
Sbjct 535 TATTTCCATGTTGAGGAGGATCGTAACTGGAATAAG-GGTATCAAAAGTGCTAAATTCCC 593
Query 538 AGGAGTTCCTTACACATTCTTCTCTCAGAGGA-GAGGCTGCAAAGTTTCTTTGTATCAAG 596
|||||||| ||||| |||||||| |||| || ||||||||| |||||| |||| ||||
Sbjct 594 TGGAGTTCCATACACGTTCTTCTCGCAGA-GACAAGGCTGCAAGGTTTCTCTGTACCAAG 652
Query 597 ATGCTCATATCCCTGGA-AACTTTGTCCCGAAAATCCCTCTTGCGGGAGGGAAAAACTAC 655
|||||||||| || || ||||||||||| | ||| ||||| || |||||||| |||||
Sbjct 653 ATGCTCATATTCC-AGACAACTTTGTCCCTAGAATTCCTCTCGCTGGAGGGAAGAACTAT 711
Query 656 GAGCCACATCGATGTTGGGAGGATATTTTCGATGCAATTA-CTAATGCTAAACACTTGAT 714
||||| || ||||||||||||||||||||||||| |||| | || || |||||||||||
Sbjct 712 GAGCCTCAAAGATGTTGGGAGGATATTTTCGATGCCATTAGC-AACGCAAAACACTTGAT 770
Query 715 TTACATTACTGGTTGGTCTGTTTACACTGAGATTTCTTTAGTGAGGGACTCGAGGAGGCC 774
|||||||| ||||||||||||||| ||||||| | |||||||| ||||||||||||||
Sbjct 771 CTACATTACGGGTTGGTCTGTTTACGTTGAGATTGCCTTAGTGAGAGACTCGAGGAGGCC 830
Query 775 AAAACAAGGAGGAGATGTGACTGTTGGTGAGCTACTCAAGAAGAAAGCTAGTGAAGGTGT 834
|| | ||||||||||||||| |||||||||| ||||||||||| ||||||||||||||
Sbjct 831 TAAGCCAGGAGGAGATGTGACCATTGGTGAGCTTCTCAAGAAGAAGGCTAGTGAAGGTGT 890
Query 835 TAAGGTTATTTTGCTTGTTTGGGATGACAGAACATCAGTTGATTTGCTGAAAAAAGATGG 894
|| |||| |||| |||||||||||||||||||| || |||||| | ||||| ||||||||
Sbjct 891 TAGGGTTCTTTTACTTGTTTGGGATGACAGAACCTCTGTTGATGTCCTGAAGAAAGATGG 950
Query 895 ACTTATGGCTACTCATGATGAGGAAACTGAGAATTTTTTCAGAGGAACCGACGTGAACTG 954
|| ||||||||||||||||| ||||| ||||| |||||||| |||| || || | ||
Sbjct 951 GCTCATGGCTACTCATGATGAAGAAACCGAGAACTTTTTCAGGGGAAGTGATGTCCATTG 1010
Query 955 TATTTTGTGTCCTCGTAACCCTGATGATGGTGGAAGCATTGTCCAAAACTTGCAAATCTC 1014
|||| |||||||||||||||| ||||||||||| ||||| ||||||| |||||| ||||
Sbjct 1011 TATTCTGTGTCCTCGTAACCCGGATGATGGTGGTAGCATAGTCCAAAGCTTGCAGGTCTC 1070
Query 1015 AACTATGTTCACTCATCACCA-AAAGATTGTTGTTGTAGACAGTGAAATGCC---GAGTG 1070
||||||||||| || || || ||| || |||||||| |||||||| ||||| || |
Sbjct 1071 TACTATGTTCACGCACCATCAGAAA-ATCGTTGTTGTGGACAGTGAGATGCCAAACAGAG 1129
Query 1071 GAGGATCA-AGATCCAGAAGAATAGTGAGTTTTGTTGGTGGTCTTGATCTTTGTGATGGA 1129
|||||||| | || || ||||| ||||| |||||||| ||| ||||||| |||||||||
Sbjct 1130 GAGGATCAGAAAT-GAGGAGAATTGTGAGCTTTGTTGGCGGTATTGATCTCTGTGATGGA 1188
Query 1130 AGATATGACACTCCGTTTCACTCCTTGTTTAGAACGTTGGACACTGCCCATCACGATGAC 1189
||||| ||||||||||| ||||||||||| || || |||||||| | ||| || ||||||
Sbjct 1189 AGATACGACACTCCGTTCCACTCCTTGTTCAGGACATTGGACACAGTCCACCATGATGAC 1248
Query 1190 TTCCATCAACCGAATTTCACTGGCGCTGCGATAACCAAAGGTGGTCCTAGAGAGCCATGG 1249
||||||||||| || |||||||| ||||| || || ||||||||||| || ||||| |||
Sbjct 1249 TTCCATCAACCTAACTTCACTGGTGCTGCTATCACTAAAGGTGGTCCAAGGGAGCCTTGG 1308
Query 1250 CATGATATTCATTGTCGTCTTGAAGGACCTATTGCTTGGGATGTCTTGTATAATTTTGAG 1309
||||| || || | ||||||||||| || ||||| ||||||||| |||||||||| |||
Sbjct 1309 CATGACATCCACTCCCGTCTTGAAGGTCCAATTGCCTGGGATGTCATGTATAATTTCGAG 1368
Query 1310 CAGAGATGGAG-TAGACAAGGCGGTAAAGATATTTTGGTTAAAATGAGAGAACTCGGAGA 1368
||||||||||| || || || |||||||| ||| ||||||| ||||||| || || ||
Sbjct 1369 CAGAGATGGAGCAAG-CAGGGTGGTAAAGACATTCTGGTTAAGTTGAGAGATCTTGGTGA 1427
Query 1369 TATTATCATC-CCGCCTTCTCCCGTTCTGTTCTC-AGAGGATCATGACGTGTGGAATGTT 1426
|||||| ||| || |||||||| ||| ||||| | |||||| ||||| |||||||||||
Sbjct 1428 TATTATTATCACC-CCTTCTCCTGTTATGTTC-CAAGAGGACCATGATGTGTGGAATGTC 1485
Query 1427 CAGTTGTTTAGATCCATTGATGGTGGAGCAGCTGCTGGATTTCCTGACTCCCCTGAAGCT 1486
|| |||||||||||||||||||||||||| |||||||| ||||| || || |||||||||
Sbjct 1486 CAATTGTTTAGATCCATTGATGGTGGAGCTGCTGCTGGGTTTCCCGAGTCGCCTGAAGCT 1545
Query 1487 GCAGCGGAAGCAGGTCTTGTGAGTGGAAAAGATAATATAATTGATAGGAGTATTCAAGAT 1546
|| || ||||| || ||||| ||||| |||||||| || |||||||||||||| ||||||
Sbjct 1546 GCTGCTGAAGCCGGGCTTGTAAGTGGGAAAGATAACATCATTGATAGGAGTATCCAAGAT 1605
Query 1547 GCTTACATTCACGCGATTAGACGAGCTAAAGACTTCATCTATATCGAAAACCAGTACTTC 1606
|||||||||||||| || ||||| || || || |||||||| | |||||||||||||||
Sbjct 1606 GCTTACATTCACGCAATCAGACGGGCCAAGGATTTCATCTACGTTGAAAACCAGTACTTC 1665
Query 1607 CTTGGAAGCTCTTTTGCTTGGAGC-GCGGATGGAATCAAACCAGAGGAAATCAATGCTCT 1665
||||| || |||||||||||| || || ||||| || | || ||||| |||||||| ||
Sbjct 1666 CTTGGGAGTTCTTTTGCTTGG-GCCGCCGATGGTATTACTCCTGAGGACATCAATGCCCT 1724
Query 1666 GCATCTGATTCCGAAG-GAGCTATCTTTGAAGATTGTTAGCAAAATCAAAGCA-GGAGAG 1723
||| || | ||| || ||| |||| ||||||| |||||||| ||| | | | ||||||
Sbjct 1725 GCA-CTTAATCCCAAAAGAGTTATCGCTGAAGATAGTTAGCAAGATCGA-GAAAGGAGAG 1782
Query 1724 AAGTTTAAGGTCTATGTTGTTGTTCCAATGTGGCCTGAAGGGATTCCTGAGAGTGGATCA 1783
||||| | ||| |||||||| || ||||||||||| ||||| | || ||||||||||||
Sbjct 1783 AAGTTCAGGGTGTATGTTGTGGTCCCAATGTGGCCAGAAGGTCTCCCAGAGAGTGGATCA 1842
Query 1784 GTCCAAGCTATATTAGATTGGCAGAAAAGAACAATGGAGATGATGTACAAAGATGTAAT- 1842
|| |||||||||||||||||||||| || || ||||||||||||||||| ||||| ||
Sbjct 1843 GTGCAAGCTATATTAGATTGGCAGAGGAGGACCATGGAGATGATGTACAAGGATGTGATT 1902
Query 1843 CAAGGCACTTAGAGAAAATGGACTTGAGGGAGAGGATCCGCGAGATTATCTGACATTCTT 1902
|| ||| || || | | || ||||||| | || |||| || | ||||||||||||||
Sbjct 1903 CA-GGCTCTCAGGGCGCAGGGTCTTGAGG-A-AG-ATCCAAGAAACTATCTGACATTCTT 1958
Query 1903 CTGCCTCGGTAACCGAGAGGTCAAGAAAGATGGAGAGTATGAGCCTTCAGAGAAACCTGA 1962
||| || || ||||| |||||||||||||||||||| ||||||||| | |||||||| ||
Sbjct 1959 CTGTCTTGGAAACCGTGAGGTCAAGAAAGATGGAGAATATGAGCCTGCTGAGAAACCAGA 2018
Query 1963 ACCGGACACTGACTATATCCGAGCACAAGAAGCACGCCGCTTCATGATCTATGTTCACAC 2022
|| ||||| | ||||| | || |||||||| |||||||||||||| || || |||||
Sbjct 2019 CCCCGACACAAATTATATGAGGGCGCAAGAAGCCCGCCGCTTCATGATTTACGTCCACAC 2078
Query 2023 TAAAATGATGATAGTTGACGATGAGTACATTATAATCGGATCAGCAAATATCAACCAGAG 2082
||||||||||| |||||||||||||| ||||| ||||| || || || |||||||||||
Sbjct 2079 CAAAATGATGATCGTTGACGATGAGTATATTATTATCGGGTCTGCTAACATCAACCAGAG 2138
Query 2083 GTCAATGGATGGTGCAAGAGACTCAGAGATAGCAATGGGAGGCTATCAACCATATCATCT 2142
||||||||| |||||||||||||| ||||||||||||||||| ||||||||| |||| ||
Sbjct 2139 GTCAATGGACGGTGCAAGAGACTCTGAGATAGCAATGGGAGGTTATCAACCACATCACCT 2198
Query 2143 CTCA-ACAAGACAACCAGCTCGAGGTCAAATCCATGGATTCCGCATGTCTTTATGGTATG 2201
|| | | ||||||||||||| || || |||||||| ||||| ||||| | ||||| |
Sbjct 2199 GTCCTATA-GACAACCAGCTCGTGGCCAGATCCATGGGTTCCGTATGTCACTCTGGTACG 2257
Query 2202 AACATTTAGGAATGCTCGATGAAACATTCCTCGATCCATCGAGCCAAGAATGTATCCAGA 2261
|||| | |||||||| |||||||| ||||||||||| || ||| ||||| || |||
Sbjct 2258 AACACCTGGGAATGCTAGATGAAACCTTCCTCGATCCCTCAAGCTTGGAATGCATTGAGA 2317
Query 2262 AAGTCAACCGTGTTGCTGATAAGTATTGGGATCTTT-ACTCAAGTGAGTCACTTGAACAT 2320
|||| ||||| || |||| ||||||||||| |||| |||||||||||||||||||||||
Sbjct 2318 AAGTTAACCGCATTTCTGACAAGTATTGGGA-CTTTTACTCAAGTGAGTCACTTGAACAT 2376
Query 2321 GATCTTCCTGGTCATCTA-CTTCGCTACCCGATCGGTATTGCTAGTGAAGG-GAACATCA 2378
|| ||||| ||||| || || ||||||||||| ||| | ||||| ||||| || |||||
Sbjct 2377 GACCTTCCCGGTCA-CTTGCTCCGCTACCCGATTGGTGTAGCTAGCGAAGGCGA-CATCA 2434
Query 2379 CTGAGCTTCCCGGATGTGAATTCTTTCCCG-ACACAAAAGCTCGTATCCTCGGTGTCAAA 2437
|||||||||| |||| ||||||||| |||| ||||||| || ||||||||||| ||||
Sbjct 2435 CTGAGCTTCCAGGATTTGAATTCTT-CCCGGACACAAAGGCCCGTATCCTCGGCACCAAA 2493
Query 2438 TCTGATTACATGCCTCCAATTCTTACAACCTAA 2470
|| || ||| |||||||||| ||||||||||||
Sbjct 2494 TCAGACTACCTGCCTCCAATCCTTACAACCTAA 2526
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 93092558780
Database: halleri_transcript_ahg.fa
Posted date: Sep 25, 2014 2:02 AM
Number of letters in database: 38,939,717
Number of sequences in database: 32,672
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5