BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: halleri_transcript_ahg.fa
32,672 sequences; 38,939,717 total letters
Query= AT1G52580.1
Length=1024
Score E
Sequences producing significant alignments: (Bits) Value
Ahg474384 jgi|Araly1|474384|fgenesh2_kg.1__4338__AT1G52580.1 1526 0.0
> Ahg474384 jgi|Araly1|474384|fgenesh2_kg.1__4338__AT1G52580.1
Length=973
Score = 1526 bits (826), Expect = 0.0
Identities = 904/942 (96%), Gaps = 4/942 (0%)
Strand=Plus/Plus
Query 1 ATGGGGAAGAGACCGCCGATTCCACCAGATATCGAAAACGGACCACCACCACCAGCGCGA 60
|||||||||||||||||||||||||||||||||||| |||| ||||||||||||||||||
Sbjct 1 ATGGGGAAGAGACCGCCGATTCCACCAGATATCGAACACGGCCCACCACCACCAGCGCGA 60
Query 61 CCACATTTTCGCCCGCCCATTCCCGTGCCATGGGTTGCGTGGCTTGTGCCTCTCATTTTA 120
||||| ||||||||||| ||||| ||||||||||||||||||||||||||||||||||||
Sbjct 61 CCACAGTTTCGCCCGCCTATTCCGGTGCCATGGGTTGCGTGGCTTGTGCCTCTCATTTTA 120
Query 121 GCAGCCAACTTCGTCACATTCGCTACCACCATGTATGTGAACGATTGCCCTGCAAGATCA 180
|||||||||||||||||||||||||||||||||||||| |||||||| ||||||||||||
Sbjct 121 GCAGCCAACTTCGTCACATTCGCTACCACCATGTATGTAAACGATTGTCCTGCAAGATCA 180
Query 181 GATGAGTGTCTCTTATTTGATGTCCTTGGAAGGCTTTCGTTTCAACCGATTAAGGAGAAT 240
||||||||||||||||||||||||||||| ||||| ||||||||||| ||||||||||||
Sbjct 181 GATGAGTGTCTCTTATTTGATGTCCTTGGTAGGCTCTCGTTTCAACCCATTAAGGAGAAT 240
Query 241 ATGCTACTCGGTCCTTCTATTCCCACGCTGAGAAAACTCGGAGCTCTCGAAAGGAGACTT 300
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 241 ATGCTACTCGGTCCTTCTATTCCCACGCTGAGAAAACTCGGAGCTCTCGAAAGGAGACTT 300
Query 301 GTGGAGGAAGGTGAGAGATGGCGTCTCATCTCTTGCATATGGCTTCATGGTGGTTTCCTT 360
|| |||||||||||||||||||||||||||||||||||||||||||| ||||||||||||
Sbjct 301 GTAGAGGAAGGTGAGAGATGGCGTCTCATCTCTTGCATATGGCTTCACGGTGGTTTCCTT 360
Query 361 CACTTGATGGCTAACATGATCAGCCTCATGTGTATCGGAATGCGCCTTGAACAAGAATTT 420
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 361 CACTTGATGGCTAACATGATCAGCCTCATGTGTATCGGAATGCGCCTTGAACAAGAATTT 420
Query 421 GGATTCATGAGAATCGGAGCTTTGTATGTGATCTCCGGGCTTGGAGGAAGCCTGGTGTCT 480
|||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||
Sbjct 421 GGATTCATGAGAATCGGAGCTTTGTATGTGATCTCCGGGCTTGGAGGAAGCCTGATGTCT 480
Query 481 TGCTTAACAGATTCCCAAGGAGAACGGGTATCAGTCGGAGCATCTGGTGCTTTGTTCGGA 540
||||||||||||||||||||||||||||||||||| |||||||| |||||||||||||||
Sbjct 481 TGCTTAACAGATTCCCAAGGAGAACGGGTATCAGTTGGAGCATCCGGTGCTTTGTTCGGA 540
Query 541 TTACTCGGTGCAATGCTCTCAGAGCTCATCACAAACTGGACAATCTATGAAAATAAGTGC 600
|||||||||||||||||||||||||| || |||||||||||||||||||||||||||||
Sbjct 541 TTACTCGGTGCAATGCTCTCAGAGCTGATAACAAACTGGACAATCTATGAAAATAAGTGT 600
Query 601 ACCGCACTTATGACATTAATCCTGATCATTGTACTGAATCTAAGCGTCGGATTCTTACCA 660
|||||||||||||||||| | |||||||||||||||||||||||||||||||||||||||
Sbjct 601 ACCGCACTTATGACATTAGTTCTGATCATTGTACTGAATCTAAGCGTCGGATTCTTACCA 660
Query 661 CGTGTGGACAATTCTGCTCATTTTGGAGGATTCCTAGCTGGTTTCTTCCTCGGGTTCGTC 720
|||||||||||||||||||||||||||||||||||||| ||||||||||| |||||||||
Sbjct 661 CGTGTGGACAATTCTGCTCATTTTGGAGGATTCCTAGCCGGTTTCTTCCTTGGGTTCGTC 720
Query 721 CTTCTTCTCCGTCCGCAGTACGGATACGTGAACCCAAAATACATTCCTCCTGGTTATGAC 780
||||||||||||||||||||||||||||||| ||| |||||||||||||||||||||||
Sbjct 721 CTTCTTCTCCGTCCGCAGTACGGATACGTGAGCCCTAAATACATTCCTCCTGGTTATGAT 780
Query 781 ATGAAACACAAGAAATCAAAACACAAGTGTTATCAACACATCTTCAGAT-T-TACATCTC 838
|||||||||||||||||||||||||||||||||||||||||| | ||| | ||||||||
Sbjct 781 ATGAAACACAAGAAATCAAAACACAAGTGTTATCAACACATCCT--GATGTATACATCTC 838
Query 839 TAGCTATCCTTCTTGCGGGATTCATTGCGGGATACACTAAGCTTCTTAGAGAACATACCA 898
|||| ||||||||| |||||||||| ||||||| ||||||||||| |||||||||||||
Sbjct 839 TAGCCGTCCTTCTTGTGGGATTCATTTCGGGATATACTAAGCTTCTCAGAGAACATACCA 898
Query 899 TACAGAGCATGCCATTCAGAGATTTCAATTAGCAGCTTGTAG 940
|||||||| ||||| |||||||||||||||||||||||||||
Sbjct 899 TACAGAGCGTGCCACTCAGAGATTTCAATTAGCAGCTTGTAG 940
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 38084794083
Database: halleri_transcript_ahg.fa
Posted date: Sep 25, 2014 2:02 AM
Number of letters in database: 38,939,717
Number of sequences in database: 32,672
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5