BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: halleri_transcript_ahg.fa
32,672 sequences; 38,939,717 total letters
Query= AT1G52590.1
Length=776
Score E
Sequences producing significant alignments: (Bits) Value
Ahg474385 jgi|Araly1|474385|fgenesh2_kg.1__4339__AT1G52590.1 1011 0.0
> Ahg474385 jgi|Araly1|474385|fgenesh2_kg.1__4339__AT1G52590.1
Length=757
Score = 1011 bits (547), Expect = 0.0
Identities = 694/762 (91%), Gaps = 22/762 (3%)
Strand=Plus/Plus
Query 32 GAAGCTTTGAGATGGCGATCCTTATTCCGGCGAGTTTCGGGCG-ATTAACAATTACGTCG 90
||||||||||||||||||||||| ||||||||| ||||||| | ||| || || | |||
Sbjct 1 GAAGCTTTGAGATGGCGATCCTTTTTCCGGCGAATTTCGGG-GTATTTACTGTTCCTTCG 59
Query 91 CGTGCACAAGTTAGAGTGAGAGTTTCTGCTTCTGCTAACCAACGCACTATTCGTCGCGAT 150
||||| ||||||||| ||||||||||||||||||||||||||||||||||||||| | ||
Sbjct 60 CGTGCGCAAGTTAGACTGAGAGTTTCTGCTTCTGCTAACCAACGCACTATTCGTCCCAAT 119
Query 151 TCAGTGGATTGGGTTAAGGAAACTTCAAGCTTTTTCGAAGAAGATAAAAGGCCGATCATG 210
|||| ||| ||||||||||||||||||||||||||||||||||| || ||||||||||||
Sbjct 120 TCAGGGGACTGGGTTAAGGAAACTTCAAGCTTTTTCGAAGAAGACAAGAGGCCGATCATG 179
Query 211 TTGTTCGACGGTGTTTGTAATCTCTGTAATGGAGGTGTGAAATTTGTTAGAGACCATGAT 270
|||||||| |||||||| ||||| |||||||||||||| |||||||||||||||||||||
Sbjct 180 TTGTTCGATGGTGTTTGCAATCTTTGTAATGGAGGTGTTAAATTTGTTAGAGACCATGAT 239
Query 271 CGAAACAGGAGCATAAGGTTTGAAGCATTACAGAGTGAAGCGGGCAAGAAACTGTTATTG 330
|||||||||||||| |||||||||||||||||||| ||||||||||||||||||||| ||
Sbjct 240 CGAAACAGGAGCATTAGGTTTGAAGCATTACAGAGCGAAGCGGGCAAGAAACTGTTAATG 299
Query 331 CGGTCAGGAAGAGCTCCTGACGATATATCGAGTGTCGTACTAGTCGAAAACGATAGGTCT 390
|| |||||||||||||||||||||||||||||||||||||| || ||||| |||||||||
Sbjct 300 CGATCAGGAAGAGCTCCTGACGATATATCGAGTGTCGTACTTGTGGAAAATGATAGGTCT 359
Query 391 TACATAAAGTCAGAAGCAGTTTTGAAGATCATGAAATACATTGACTTACCATTTCCACAG 450
|||||||||||||| || || |||||||||||||||||||||||||||||||||||||||
Sbjct 360 TACATAAAGTCAGAGGCGGTGTTGAAGATCATGAAATACATTGACTTACCATTTCCACAG 419
Query 451 CTTGCGTTCTTC-TTGCAGTTTGCTCCTCTGTTTGTGAGAGACTTTTTGTATGAAAATGT 509
|||||||||||| || |||||||| |||||||||||||| ||||||||||||||||||||
Sbjct 420 CTTGCGTTCTTCATT-CAGTTTGCGCCTCTGTTTGTGAGGGACTTTTTGTATGAAAATGT 478
Query 510 TGCAAACAATCGATATGCAATGTTTGGTCGATCTGATTCATGTGAGCTCTAAGAATACAT 569
||||||||| |||||||||||||||||||||||||||||||||||| |||||||||||||
Sbjct 479 TGCAAACAACCGATATGCAATGTTTGGTCGATCTGATTCATGTGAGATCTAAGAATACAT 538
Query 570 -AT-G-T-G--ATCCTACTTTGCCACaaaaaaaaaaaC-TAGATATGTAA----T----C 614
|| | | | ||||||||||||||||||||||||| | ||||||||||| | |
Sbjct 539 TATTGATTGTGATCCTACTTTGCCACAAAAAAAAAACCCTAGATATGTAAAAAATGTTTC 598
Query 615 CTACAGATTAATATAAGCTTTTATACAGATGTATAGTTTACAACAGCCATTAAACAATAG 674
|||||| |||||||| |||| ||||||||||| ||| |||||||||||||| ||||| ||
Sbjct 599 CTACAGTTTAATATACGCTTGTATACAGATGTGTAGATTACAACAGCCATTGAACAACAG 658
Query 675 ATACATATGTACTACTTTTCGAATCATGTACTCGTCAAATGTATAACCTTTCCGACGTTG 734
||||||||||| |||||||||||||||||||| ||||||||||||||||||| || ||||
Sbjct 659 ATACATATGTAGTACTTTTCGAATCATGTACTTGTCAAATGTATAACCTTTCTGATGTTG 718
Query 735 ATATTTGTGTTATATATATGGaaaaaaaCTTGGGATTGTGTG 776
|||||||||||| | ||||||||||| ||||||||||||||
Sbjct 719 ATATTTGTGTTA-A-ATATGGAAAAAC-CTTGGGATTGTGTG 757
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 28630310667
Database: halleri_transcript_ahg.fa
Posted date: Sep 25, 2014 2:02 AM
Number of letters in database: 38,939,717
Number of sequences in database: 32,672
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5