BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: halleri_transcript_ahg.fa
32,672 sequences; 38,939,717 total letters
Query= AT1G52600.1
Length=877
Score E
Sequences producing significant alignments: (Bits) Value
Ahg474386 jgi|Araly1|474386|fgenesh2_kg.1__4340__AT1G52600.1 1110 0.0
Ahg479026 jgi|Araly1|479026|fgenesh2_kg.3__1727__AT3G15710.1 510 6e-144
> Ahg474386 jgi|Araly1|474386|fgenesh2_kg.1__4340__AT1G52600.1
Length=727
Score = 1110 bits (601), Expect = 0.0
Identities = 657/683 (96%), Gaps = 7/683 (1%)
Strand=Plus/Plus
Query 1 GTGCCTTAAAGCTGACTCTGAGAGAAACTCTTCTTCTTCACTGCAAACGCTTTTGAGACA 60
|||||||||||||||| |||||||||| | ||||||||||||| ||||||||||| |||
Sbjct 1 GTGCCTTAAAGCTGACCCTGAGAGAAA--C-TCTTCTTCACTGC-AACGCTTTTGAAACA 56
Query 61 AAGTTCGTCACTTCGATCTGAATTATAACACTTCGTGCGAGAATC-GAAATAATCGAAGG 119
|||||||||||||||||||||||||||| |||||| ||||||||| | ||||||||||||
Sbjct 57 AAGTTCGTCACTTCGATCTGAATTATAATACTTCG-GCGAGAATCTG-AATAATCGAAGG 114
Query 120 TTCAAGATGGGTTGGATCGGAGAAACTGTAGATTCTATCAAATCTATTCAGATTCGTCAG 179
||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||
Sbjct 115 TTCAAGATGGGTTGGATCGGAGAAACTGTAGATTCTATCAAATCTATTCAGATCCGTCAG 174
Query 180 CTTTTCACTCAGGCCATCAGTCTAGGGATGATTGTCACATCTGCTTTGATCATATGGAAA 239
||||||||||| || |||||||||||||||||||| ||||||||||||||||||||||||
Sbjct 175 CTTTTCACTCAAGCGATCAGTCTAGGGATGATTGTTACATCTGCTTTGATCATATGGAAA 234
Query 240 GCTTTGATGTGTGTCACTGGAAGCGAATCTCCGGTGGTGGTTGTTCTCTCTGGAAGCATG 299
||||||||||||||||||||||| ||||||||||||||||||||||| ||||||||||||
Sbjct 235 GCTTTGATGTGTGTCACTGGAAGTGAATCTCCGGTGGTGGTTGTTCTTTCTGGAAGCATG 294
Query 300 GAACCCGGTTTTAAGAGGGGGGATATATTGTTCTTGCACATGAGTAAAGACCCGATTCGA 359
||||| ||||||||||||||||||||||||||||||||||||||||| ||||| ||||||
Sbjct 295 GAACCTGGTTTTAAGAGGGGGGATATATTGTTCTTGCACATGAGTAAGGACCCTATTCGA 354
Query 360 GCAGGTGAAATTGTTGTTTTCAATGTTGATGGTCGTGATATTCCCATTGTCCATCGTGTC 419
||||| |||||||||||||| |||||||||||||||||||||||||| ||||||||||||
Sbjct 355 GCAGGCGAAATTGTTGTTTTTAATGTTGATGGTCGTGATATTCCCATCGTCCATCGTGTC 414
Query 420 ATTAAGGTTCACGAAAGGGAAAATACAGGAGAAGTTGATGTTCTAACGAAAGGTGACAAT 479
|||||||||||||||||||||||||||||||||||||||||| |||| ||||||||||||
Sbjct 415 ATTAAGGTTCACGAAAGGGAAAATACAGGAGAAGTTGATGTTTTAACAAAAGGTGACAAT 474
Query 480 AACTATGGAGATGACAGACTTCTGTATGCTGAAGGACAGCTTTGGCTTCATCGACATCAT 539
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 475 AACTATGGAGATGACAGACTTCTGTATGCTGAAGGACAGCTTTGGCTTCATCGACATCAT 534
Query 540 ATAATGGGTCGTGCTGTCGGGTTCTTGCCTTATGTTGGATGGGTGACTATTATCATGACA 599
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 535 ATAATGGGTCGTGCTGTCGGGTTCTTGCCTTATGTTGGATGGGTGACTATTATCATGACA 594
Query 600 GAAAAGCCTATCATCAAGTATATTCTCATAGGTGCATTGGGTTTACTCGTTATAACGTCA 659
|||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||
Sbjct 595 GAAAAGCCTATCATCAAGTATATTCTCATAGGTGCATTGGGTTTACTCGTTATAACCTCC 654
Query 660 AAGGATTGAGTCTTTTGGAAAGG 682
|||||||||||||||||||||||
Sbjct 655 AAGGATTGAGTCTTTTGGAAAGG 677
> Ahg479026 jgi|Araly1|479026|fgenesh2_kg.3__1727__AT3G15710.1
Length=817
Score = 510 bits (276), Expect = 6e-144
Identities = 456/543 (84%), Gaps = 11/543 (2%)
Strand=Plus/Plus
Query 126 ATGGGTTGGATCGGAGAAACTGTAGATTCTATCAAATCTATTC-AGATTCGTCAGCTTTT 184
||||||| || ||||||||||||||||| || ||||||| || |||| ||||||||| |
Sbjct 109 ATGGGTTTCATTGGAGAAACTGTAGATTCCATTAAATCTA-TCAAGATCCGTCAGCTTCT 167
Query 185 CACTCAGGCCATCAGTCTAGGGATGATTGTCACATCTGCTTTGATCATATGGAAAGCTTT 244
||||||||| |||| ||| || ||||| || |||||||| ||||| || ||||| || ||
Sbjct 168 CACTCAGGCTATCACTCTCGGTATGATCGTTACATCTGCATTGATAATTTGGAAGGCATT 227
Query 245 GATGTGTGTCACTGGAAGCGAATCTCCGGTGGTGGTTGTTCTCTCTGGAAGCATGGAACC 304
||| ||||||||||| || ||||| || ||||| ||||||||||| | ||||||||||||
Sbjct 228 GATATGTGTCACTGGCAGTGAATCACCTGTGGTTGTTGTTCTCTCAGAAAGCATGGAACC 287
Query 305 CGGTTTTAAGAGGGGGGATATATTGTTCTTGCACATGAGTAAAGACCCGATTCGAGCAGG 364
|| ||| |||| ||||||||||||||||||| |||| | || || |||||||||||
Sbjct 288 TGGCTTTCAGAGAGGGGATATATTGTTCTTGCGGATGACCGATGAGCCTATTCGAGCAGG 347
Query 365 TGAAATTGTTGTTTTCAATGTTGATGGTCGTGATATTCCCATTGTCCATCGTGTC-ATTA 423
|| ||||||||||| | ||||||||||||||| ||||||||||| ||||| | | || |
Sbjct 348 CGAGATTGTTGTTTTTAGTGTTGATGGTCGTGAAATTCCCATTGTTCATCGAG-CAATCA 406
Query 424 AGGTTCACGAAAGGGAAAATAC-AGGAGAAGTTGATGTTCTAACGAAAGGTGACAATAAC 482
| ||||| || |||| | |||| | |||||||||||||||||| ||||||||||| ||
Sbjct 407 AAGTTCATGAGAGGGGAGATACTA-AAGAAGTTGATGTTCTAACAAAAGGTGACAACAA- 464
Query 483 T-ATGGAGATGACAGACTTCTGTATGCTGAAGGACAGCTTTGGCTTCATCGACATCATAT 541
| | ||||||| ||| ||||| |||||||| |||||||||||| | || |||||
Sbjct 465 TGACATTGATGACATTGGTCTCTATGCGGAAGGACAACTTTGGCTTCATAGGCACCATAT 524
Query 542 AATGGGTC-GTGCTGTCGGGTTCTTGCCTTATGTTGGATGGGTGACTATTATCATGACAG 600
||||| | | ||||| |||||| ||||||||||||||||||||||||||||||||||||
Sbjct 525 CATGGG-CAGAGCTGTTGGGTTCCTGCCTTATGTTGGATGGGTGACTATTATCATGACAG 583
Query 601 AAAAGCCTATCATCAAGTATATTCTCATAGGTGCATTGGGTTTACTCGTTATAACGTC-A 659
|||||||||||||||||||||| ||||| |||||||||||||| ||||||||||| || |
Sbjct 584 AAAAGCCTATCATCAAGTATATACTCATTGGTGCATTGGGTTTGCTCGTTATAACATCCA 643
Query 660 AAG 662
|||
Sbjct 644 AAG 646
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 32480725284
Database: halleri_transcript_ahg.fa
Posted date: Sep 25, 2014 2:02 AM
Number of letters in database: 38,939,717
Number of sequences in database: 32,672
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5