BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: halleri_transcript_ahg.fa
32,672 sequences; 38,939,717 total letters
Query= AT1G52618.1
Length=516
Score E
Sequences producing significant alignments: (Bits) Value
Ahg892135 jgi|Araly1|892135|Al_scaffold_0006_131 313 1e-84
Ahg897639 jgi|Araly1|897639|Al_scaffold_0005_1605 298 3e-80
Ahg896909 jgi|Araly1|896909|Al_scaffold_0005_875 165 3e-40
> Ahg892135 jgi|Araly1|892135|Al_scaffold_0006_131
Length=318
Score = 313 bits (169), Expect = 1e-84
Identities = 224/251 (89%), Gaps = 1/251 (0%)
Strand=Plus/Plus
Query 101 ATGTCACCAGAAAATAGAACGGAAGCTCGGAACTTGTTGATTCCCAGTGGCAGAGAACCA 160
|||||||| || | || |||||||||||||| ||||||| || || |||||| ||| ||
Sbjct 1 ATGTCACCGGAGACTAAAACGGAAGCTCGGATCTTGTTGGTTACCGGTGGCATAGAGTCA 60
Query 161 TTCGCACTAGATCCGGTGGTTTCAAGGTCCACGACTTTGAGGCATAGAAGAAGGATTGAA 220
||||| |||||||||||||||||||||||||| |||||||||| |||||||||||||||
Sbjct 61 ATCGCATTAGATCCGGTGGTTTCAAGGTCCACGGCTTTGAGGCAGAGAAGAAGGATTGAA 120
Query 221 AACCACCATCGGAAGAAACCAATTTCCGACGATGCACCTCACCGTCGACTCACCAAACCC 280
|||| || | ||||||||||| ||||||||||||||||||||||||||||| ||||||||
Sbjct 121 AACC-CCGTTGGAAGAAACCAGTTTCCGACGATGCACCTCACCGTCGACTCGCCAAACCC 179
Query 281 GCCACAAACCTCCCAGAAAACTCGACTCTCCGACTCACCGGCTCTACGACGATAGATCCT 340
|| |||||||||||||||||||| |||||||||| |||| |||||||| ||| | |||||
Sbjct 180 GCTACAAACCTCCCAGAAAACTCAACTCTCCGACACACCAGCTCTACGTCGACATATCCT 239
Query 341 GACCAAGCAAT 351
|||||||||||
Sbjct 240 GACCAAGCAAT 250
> Ahg897639 jgi|Araly1|897639|Al_scaffold_0005_1605
Length=585
Score = 298 bits (161), Expect = 3e-80
Identities = 211/235 (90%), Gaps = 3/235 (1%)
Strand=Plus/Plus
Query 118 AACGGAAGCTCGGAACTTGTTGA-TTCCCAGTGGCAGAGAACCATTCGCACTAGATCCGG 176
|||||||||||||| |||||| | || || |||||||||| || ||||| |||||||||
Sbjct 18 AACGGAAGCTCGGATCTTGTT-AGTTACCGGTGGCAGAGAGTCAGTCGCATTAGATCCGG 76
Query 177 TGGTTTCAAGGTCCACGACTTTGAGGCATAGAAGAAGGATTGAAAACCACCATCGGAAGA 236
||||||||||||||||| |||||||||| ||||||||||||||||||| || | ||||||
Sbjct 77 TGGTTTCAAGGTCCACGGCTTTGAGGCAGAGAAGAAGGATTGAAAACC-CCGTTGGAAGA 135
Query 237 AACCAATTTCCGACGATGCACCTCACCGTCGACTCACCAAACCCGCCACAAACCTCCCAG 296
||||| ||||||||||||||||||||||||||||| ||| ||||| |||||||||||||
Sbjct 136 AACCAGTTTCCGACGATGCACCTCACCGTCGACTCGCCACTCCCGCTACAAACCTCCCAG 195
Query 297 AAAACTCGACTCTCCGACTCACCGGCTCTACGACGATAGATCCTGACCAAGCAAT 351
||||||||||||||| || ||||||||||||| ||| | ||||||||||||||||
Sbjct 196 AAAACTCGACTCTCCAACACACCGGCTCTACGTCGACATATCCTGACCAAGCAAT 250
> Ahg896909 jgi|Araly1|896909|Al_scaffold_0005_875
Length=264
Score = 165 bits (89), Expect = 3e-40
Identities = 137/160 (86%), Gaps = 3/160 (2%)
Strand=Plus/Minus
Query 195 CTTTGAGGCATAGAAGAAGGATTGAAAAC-CACCATCGGAAGAAACCAATTTCCGACGAT 253
||||| | |||||||| ||||||| |||| |||| | | ||||| | ||||||||||
Sbjct 258 CTTTGCGACATAGAAGGAGGATTG-AAACACACCGTTGAAAGAATTCGGTTTCCGACGAA 200
Query 254 GCA-CCTCACCGTCGACTCACCAAACCCGCCACAAACCTCCCAGAAAACTCGACTCTCCG 312
||| |||||||| |||||| |||| ||||| |||||||||||||||||||||||||||||
Sbjct 199 GCATCCTCACCGCCGACTCGCCAATCCCGCTACAAACCTCCCAGAAAACTCGACTCTCCG 140
Query 313 ACTCACCGGCTCTACGACGATAGATCCTGACCAAGCAATC 352
||| | |||||| ||| ||||||||||||||| |||||||
Sbjct 139 ACTGATCGGCTCCACGTCGATAGATCCTGACCGAGCAATC 100
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 18772549788
Database: halleri_transcript_ahg.fa
Posted date: Sep 25, 2014 2:02 AM
Number of letters in database: 38,939,717
Number of sequences in database: 32,672
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5