BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: halleri_transcript_ahg.fa
32,672 sequences; 38,939,717 total letters
Query= AT1G52630.1
Length=1537
Score E
Sequences producing significant alignments: (Bits) Value
Ahg474388 jgi|Araly1|474388|fgenesh2_kg.1__4342__AT1G52630.1 2451 0.0
> Ahg474388 jgi|Araly1|474388|fgenesh2_kg.1__4342__AT1G52630.1
Length=1458
Score = 2451 bits (1327), Expect = 0.0
Identities = 1420/1464 (97%), Gaps = 9/1464 (1%)
Strand=Plus/Plus
Query 77 AATCAAATGATTGGATCTCCGGTGAAACCACTGTTCGTCTTCGTCTTAACTTTCTCTCTT 136
|||||||||||||||||||||||||| ||| ||||||||||||| |||||||||||||||
Sbjct 1 AATCAAATGATTGGATCTCCGGTGAAGCCATTGTTCGTCTTCGTGTTAACTTTCTCTCTT 60
Query 137 CTCCTCGTCGTTATTCTTCTATCCCCGTCGCCACATATTCTGCAGATTCCGTTTCCTTCC 196
|| |||||||||||||||||||| ||||||||||||||||||||||||||||||||||||
Sbjct 61 CTTCTCGTCGTTATTCTTCTATCGCCGTCGCCACATATTCTGCAGATTCCGTTTCCTTCC 120
Query 197 GGTTCATCAGTGGGTTCTTCTGATATATGGAGTGTGAAGAGGATAATGGAATGGAGACCT 256
|||||||||||||| |||||||||||||||||||||||||||||||||||||||||||
Sbjct 121 GGTTCATCAGTGGG---TTCTGATATATGGAGTGTGAAGAGGATAATGGAATGGAGACCT 177
Query 257 TGCAAATGGTGGTTACAAGGACACCTCACTCCTCTACCTGCTAAAACTAATGGATATATA 316
||||||||||||||||||||||| |||||||||||||| ||||||||||||||||||||
Sbjct 178 TGCAAATGGTGGTTACAAGGACATCTCACTCCTCTACCCGCTAAAACTAATGGATATATC 237
Query 317 CGCGTTGATTGCTATGGCGGCCTGAATCAGATGAGACGCGATTTGTGTGATGGAGTTGGG 376
|||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||
Sbjct 238 CGCGTTGATTGCTAGGGCGGCCTGAATCAGATGAGACGCGATTTGTGTGATGGAGTTGGG 297
Query 377 ATTGCCCGTTTGTTGAATGCTACACTTGTTCTGCCAAAGTTTGAGGTAGCTGCCTATTGG 436
|||||||||||||||||||| |||||||||||||||||||||||||||||||| ||||||
Sbjct 298 ATTGCCCGTTTGTTGAATGCCACACTTGTTCTGCCAAAGTTTGAGGTAGCTGCGTATTGG 357
Query 437 AATGAGTCAAGTGGATTTGCAGATGTGTTTGATGTAGACTACTTTATTCAAAAGATGAGT 496
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 358 AATGAGTCAAGTGGATTTGCAGATGTGTTTGATGTAGACTACTTTATTCAAAAGATGAGT 417
Query 497 GGTTATATCGAAGTTGTTAAAGAATTGCCAAAAGATATTGCATCAAAAGAACCATTCAAA 556
||||||||||||||||||||||||||||| |||||||||| |||||||||||||||||||
Sbjct 418 GGTTATATCGAAGTTGTTAAAGAATTGCCGAAAGATATTGAATCAAAAGAACCATTCAAA 477
Query 557 GTAGACTGCAGCAAAAGGAAGGGTCAATTTGATTACATTGAAAGTGTTCTTCCACT-GTT 615
||||||||||||||||||||||||||||||||||||||||||||||| |||||| | |||
Sbjct 478 GTAGACTGCAGCAAAAGGAAGGGTCAATTTGATTACATTGAAAGTGTACTTCCA-TCGTT 536
Query 616 GTTGGAACATCATTACATTTCTTTTACACCAGCAATGAGCCAACGCAGGGACAGGTATCC 675
|||||||||||||||||||||||||||||| |||||||||||||||||||| ||||||||
Sbjct 537 GTTGGAACATCATTACATTTCTTTTACACCGGCAATGAGCCAACGCAGGGATAGGTATCC 596
Query 676 CGAATATGCAAGAGCCACTCTGTGTCAAGCCTGTTATTCGGCTATACACCTTACTAGTTC 735
||||| ||||||||||||||| ||||||||||||||||||||||||| ||||||||||||
Sbjct 597 CGAATTTGCAAGAGCCACTCTATGTCAAGCCTGTTATTCGGCTATACGCCTTACTAGTTC 656
Query 736 CTTGGAGAAGAAGGCCGTCGAGCTTTTTGATGCTATTCCCAAACCCTTCTTGTCGCTTCA 795
|||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||
Sbjct 657 CTTGGAGAAGAAGGCCATCGAGCTTTTTGATGCTATTCCCAAACCCTTCTTGTCGCTTCA 716
Query 796 CCTCAGATTTGAACCTGACATGGTAGCGTACAGCCAATGTGAATACCCAAACCTCTCTCC 855
||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||
Sbjct 717 CCTCAGATTTGAACCGGACATGGTAGCGTACAGCCAATGTGAATACCCAAACCTCTCTCC 776
Query 856 TTCATCTATCGCTGCCATTGAAGCTGCTCGTGCTGATAGGAAGCCATGGACTGGAGAACT 915
|||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||
Sbjct 777 TTCATCTATCGCTGCCATTGAAGCTGCTCGTGTTGATAGGAAGCCATGGACTGGAGAACT 836
Query 916 AGCTCAGACATGGAGAAAGCGAGGCAAATGCCCTCTGACTCCTAATGAAACAGTGTTGAT 975
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 837 AGCTCAGACATGGAGAAAGCGAGGCAAATGCCCTCTGACTCCTAATGAAACAGTGTTGAT 896
Query 976 GCTTCAGTCACTTAACATCCCAACAAGCACAAACATATACTTAGCAGCTGGAGACGGTCT 1035
|||||||||||||||||| ||||||||||||||||| |||||||||||||||||||||||
Sbjct 897 GCTTCAGTCACTTAACATTCCAACAAGCACAAACATTTACTTAGCAGCTGGAGACGGTCT 956
Query 1036 AATGGAGATGGAAGGATTCACATCCGTTTATACAAATGTGTTCACAAAGTCTGTTCTACT 1095
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 957 AATGGAGATGGAAGGATTCACATCCGTTTATACAAATGTGTTCACAAAGTCTGTTCTACT 1016
Query 1096 TAACCAAGAGGATTTCACCAGAATGCATGGAAACACAAAAGCTGCATTGGATTATCACGT 1155
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1017 TAACCAAGAGGATTTCACCAGAATGCATGGAAACACAAAAGCTGCATTGGATTATCACGT 1076
Query 1156 GTCCATCAATAGTGACGCATATGTGGCTACGTACTTTGGAAACATGGATAAAATAGTTGC 1215
||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1077 GTCCATCAACAGTGACGCATATGTGGCTACGTACTTTGGAAACATGGATAAAATAGTTGC 1136
Query 1216 AGCTATGCGAACATATAAACAGATGCATAATACACTGTTCCTGAGCAGAAAAGCATTTGC 1275
||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||
Sbjct 1137 AGCTATGCGAACATATAAACAGATGCATAATACTCTGTTCCTGAGCAGAAAAGCATTTGC 1196
Query 1276 GGAGCTCACTTCTCAGGGTCTTGAAGGTGCAGAGTTGAAGAAAGCTCTCTGGGAAGTTCA 1335
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1197 GGAGCTCACTTCTCAGGGTCTTGAAGGTGCAGAGTTGAAGAAAGCTCTCTGGGAAGTTCA 1256
Query 1336 TAAAAGCGATTTTGCCATTGGCAGAGGATTT-GCTTTGCCCGACTGCTTCTGTGAATTTG 1394
||||||||||||||||||||||||||| ||| ||||| ||||| ||||||||||||||||
Sbjct 1257 TAAAAGCGATTTTGCCATTGGCAGAGG-TTTCGCTTTACCCGATTGCTTCTGTGAATTTG 1315
Query 1395 AGCTGTAATGCTGTTTCTTTTCTTACCACATTCTTGAGCTGACACAACTTTTGTAATGAC 1454
||||||||| |||||||||||||||||||||||||||||||||||||| ||| |||||||
Sbjct 1316 AGCTGTAATACTGTTTCTTTTCTTACCACATTCTTGAGCTGACACAACATTTATAATGAC 1375
Query 1455 AAAAATTTGTTCATGTACTATGGCATTTTGAGAGTCGATGAGA-CGCTCCTGTCTGGAAA 1513
|| ||||||||||||||||||||| ||||||||||||||||| | |||||||||| |||
Sbjct 1376 AACAATTTGTTCATGTACTATGGCCCTTTGAGAGTCGATGAGAAC-CTCCTGTCTGCAAA 1434
Query 1514 TACAAGAAACTAGTATACATTCTG 1537
||||||||||||||||||||||||
Sbjct 1435 TACAAGAAACTAGTATACATTCTG 1458
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 57554360195
Database: halleri_transcript_ahg.fa
Posted date: Sep 25, 2014 2:02 AM
Number of letters in database: 38,939,717
Number of sequences in database: 32,672
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5