BLASTN 2.2.26+ Reference: Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000), "A greedy algorithm for aligning DNA sequences", J Comput Biol 2000; 7(1-2):203-14. Database: halleri_transcript_ahg.fa 32,672 sequences; 38,939,717 total letters Query= AT1G52640.1 Length=1722 Score E Sequences producing significant alignments: (Bits) Value Ahg923788 jgi|Araly1|923788|scaffold_105069.1 2466 0.0 > Ahg923788 jgi|Araly1|923788|scaffold_105069.1 Length=1618 Score = 2466 bits (1335), Expect = 0.0 Identities = 1496/1573 (95%), Gaps = 14/1573 (1%) Strand=Plus/Plus Query 24 AATGGCGATTCGAACAGTCTCTTCTCTTGTTCGCGCTCTTTACCAAACCCCTAAATCTCA 83 |||||||||||||||| ||||||||||||||||||||||| ||||||||||||||||||| Sbjct 20 AATGGCGATTCGAACATTCTCTTCTCTTGTTCGCGCTCTTCACCAAACCCCTAAATCTCA 79 Query 84 ATCATTTCGCATCTTCTCTACACTTCTACACGATCCACCATCACCAGATCTAGTAAACGA 143 |||||||| |||||||||| ||||||||||||||||||||||| || ||||||||||| Sbjct 80 GTCATTTCGTTTCTTCTCTACTCTTCTACACGATCCACCATCACCCGAACTAGTAAACGA 139 Query 144 GATCTCCCGCGTCCTGAGCGACCACCGGAACCCTAAAGACGATCTCGAACACACTCTTGT 203 |||||||||||| |||||||| |||||||||||||||||||| ||||| |||||||| | Sbjct 140 GATCTCCCGCGTTCTGAGCGATCACCGGAACCCTAAAGACGACCTCGAGCACACTCTCGC 199 Query 204 CGCTTACTCTCCCCGAGTTTCGTCAAATCTAGTCGAACAAGTATTGAAACGCTGCAAAAA 263 |||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||| Sbjct 200 CGCTTACTCTCCCCGAGTTTCGTCGAATCTAGTCGAACAAGTATTGAAACGCTGCAAAAA 259 Query 264 TCTCGGCTTTCCTGCTCACAGATTCTTTCTATGGGCAAGAAGAATCCCAGATTTTGCACA 323 |||||||||||||||||| ||||||||||||||||||| ||||||||||||||||| ||| Sbjct 260 TCTCGGCTTTCCTGCTCATAGATTCTTTCTATGGGCAAAAAGAATCCCAGATTTTGAACA 319 Query 324 TAGCTTGGAAAGTTATCACATTTTGGTTGAGATTTTGGGTAGTAGCAAGCAATTCGCTTT 383 |||||||||||||||||||||||||||||||||||||||| |||| |||||||||||||| Sbjct 320 TAGCTTGGAAAGTTATCACATTTTGGTTGAGATTTTGGGTTGTAGTAAGCAATTCGCTTT 379 Query 384 GCTTTGGGACTTTTTAATCGAAGCTAGAGAGTATAATTACTTTGAGATTAGTTCTAAAGT 443 |||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||| Sbjct 380 GCTTTGGGACTTTTTAATCGAAGCTAGAGAGTATAATTACTTTGAGATTACTTCTAAAGT 439 Query 444 GTTTTGGATTGTGTTTAGAGCTTATAGTAGAGCTAATTTACCTAGTGAAGCTTGTAGAGC 503 |||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||| Sbjct 440 GTTTTGGATTGTGTTTAGAGCTTATAGTAGAGCTAATTTACCTAGTGAAGCTAGTAGAGC 499 Query 504 TTTTAATCGAATGGTTGAGTTTGGGATTAAGCCTTGTGTTGATGATCTTGATCAGCTTTT 563 ||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct 500 TTTTAATCGGATGGTTGAGTTTGGGATTAAGCCTTGTGTTGATGATCTTGATCAGCTTTT 559 Query 564 GCATTCGCTTTGCGATAAGAAACATGTGAATCATGCTCAAGAGTTTTTCGGTAAAGCGAA 623 ||||||||||||||||| ||||||||||||||||||||| |||||||||| ||||||||| Sbjct 560 GCATTCGCTTTGCGATAGGAAACATGTGAATCATGCTCAGGAGTTTTTCGATAAAGCGAA 619 Query 624 AGGATTTGGGATTGTACCTAGTGCGAAGACGTATAGCATTTTGGTTAGAGGTTGGGCAAG 683 ||| || ||||||||||| |||||||||||||||||||||||||||||||| ||||| || Sbjct 620 AGGGTTCGGGATTGTACCGAGTGCGAAGACGTATAGCATTTTGGTTAGAGGGTGGGCGAG 679 Query 684 AATCCGAGACGCGTCGGGTGCACGTAAGGTGTTTGATGAAATGCTTGAGAGA-AATTGTG 742 |||||||||||||||||||||||||||||||||||||||||||||||||| | ||||||| Sbjct 680 AATCCGAGACGCGTCGGGTGCACGTAAGGTGTTTGATGAAATGCTTGAGA-ATAATTGTG 738 Query 743 TTGTGGATTTGCTTGCTTACAATGCTCTTTTAGATGCTTTGTGTAAATCTGGTGATGTTG 802 ||||||||||||||||||||||||||||||| || ||||||||||||||||||||||||| Sbjct 739 TTGTGGATTTGCTTGCTTACAATGCTCTTTTGGACGCTTTGTGTAAATCTGGTGATGTTG 798 Query 803 ATGGAGGTTATAAGATGTTTCAAGAAATGGGTAATCTTGGACTTAAACCAGACGCGTATA 862 |||||| |||||||||||||||||||||||||||||||||||||||||| || ||||||| Sbjct 799 ATGGAGCTTATAAGATGTTTCAAGAAATGGGTAATCTTGGACTTAAACCGGATGCGTATA 858 Query 863 GTTTCGCTATATTCATTCA-TGCGTACTGTGATGCGGGTGATGTTCACTCGGCTTATAAG 921 |||| || ||||||||||| | ||||||| ||||| | |||||||||||||||||||| Sbjct 859 GTTTTGCGATATTCATTCACT-CGTACTGCGATGCAAGCGATGTTCACTCGGCTTATAAA 917 Query 922 GTACTTGATAGGATGAAAAGGTACGATCTTGTACCCAATGTGTACACGTTTAACCATATC 981 ||||||||| ||||||||||||||||||||||||||||||||||||| |||||||||||| Sbjct 918 GTACTTGATCGGATGAAAAGGTACGATCTTGTACCCAATGTGTACACATTTAACCATATC 977 Query 982 ATCAAAACACTCTGCAAGAACGAGAAAGTTGATGATGCTTATTTACTGTTAGACGAGATG 1041 ||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||| Sbjct 978 ATCAAAACACTCTGCAAGAACGAGAAAGTTGATGATGCTTACTTACTGTTAGACGAGATG 1037 Query 1042 ATTCAAAAAGGAGCTAATCCGGATACTTGGACTTACAATTCGATAATGGCGTACCACTGC 1101 |||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||| Sbjct 1038 ATTCAAAAAGGAGCTAATCCGGATACTTGGACTTACAATTCGATAATGGCTTACCACTGC 1097 Query 1102 GATCACTGCGAAGTAAATCGAGCAACAAAGCTGTTATCGAGGATGGATAGAACCAAGTGT 1161 |||||||||||||| || |||||||||||||||||||| || |||||||||||||||||| Sbjct 1098 GATCACTGCGAAGTGAACCGAGCAACAAAGCTGTTATCTAGAATGGATAGAACCAAGTGT 1157 Query 1162 TTACCAGATAGACACACTTACAATATGGTTCTCAAGTTGCTT-ATAAGAATAGGGAGATT 1220 ||||| ||||||||||||||||| ||||||||||||||| || ||| ||||||||||||| Sbjct 1158 TTACCGGATAGACACACTTACAACATGGTTCTCAAGTTG-TTGATACGAATAGGGAGATT 1216 Query 1221 TGACCGCGCT-ACAGAGATATGGGAAGGAATGAGTGAGAGAAAGTTTTATCCAACGGTTG 1279 |||||||| | ||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct 1217 TGACCGCG-TGACAGAGATATGGGAAGGAATGAGTGAGAGAAAGTTTTATCCAACGGTTG 1275 Query 1280 CGACTTACACTGTGATGATTCATGGGTTGGTGAGAAAGAAAGGGAAGTTAGAGGAAGCTT 1339 |||||||||||||||||||||||||||| ||||| ||||||||||||||||||||||||| Sbjct 1276 CGACTTACACTGTGATGATTCATGGGTTAGTGAGGAAGAAAGGGAAGTTAGAGGAAGCTT 1335 Query 1340 GTAGATACTTTGAGATGATGATTGATGAAGGGATACCACCGTATTCGACAACGGTTGAGA 1399 |||| |||||||||||||||||||||||||||||||| |||||||||||||||||||||| Sbjct 1336 GTAGGTACTTTGAGATGATGATTGATGAAGGGATACCGCCGTATTCGACAACGGTTGAGA 1395 Query 1400 TGTTGAGGAATCGGTTAGTCGGTTGGGGACAAATGGATGTTGTGGATGTTTTGGCAGGGA 1459 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct 1396 TGTTGAGGAATCGGTTAGTCGGTTGGGGACAAATGGATGTTGTGGATGTTTTGGCAGGGA 1455 Query 1460 AGATGGAGAGAAGCAGTTCTTGTTCGGTTCAAGATATGGCGGTTGAGATGAGAGGGAAGA 1519 |||||||||||||||||||||||||||||| |||||||||||||||||||||||| |||| Sbjct 1456 AGATGGAGAGAAGCAGTTCTTGTTCGGTTCGAGATATGGCGGTTGAGATGAGAGGAAAGA 1515 Query 1520 GAAGGAGATTGGGACGTAGAAGTGAA--AA-T-A-G-TGAAGATGATGATGATGATTTTG 1573 ||||||||||||||||| |||||||| || | | | ||| ||||||||||||||||||| Sbjct 1516 GAAGGAGATTGGGACGTCGAAGTGAAGGAAGTGAAGATGATGATGATGATGATGATTTTG 1575 Query 1574 AGCTTGAAAGAGA 1586 ||||| ||||||| Sbjct 1576 AGCTTCAAAGAGA 1588 Lambda K H 1.33 0.621 1.12 Gapped Lambda K H 1.28 0.460 0.850 Effective search space used: 64601055520 Database: halleri_transcript_ahg.fa Posted date: Sep 25, 2014 2:02 AM Number of letters in database: 38,939,717 Number of sequences in database: 32,672 Matrix: blastn matrix 1 -2 Gap Penalties: Existence: 0, Extension: 2.5