BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: halleri_transcript_ahg.fa
32,672 sequences; 38,939,717 total letters
Query= AT1G52640.1
Length=1722
Score E
Sequences producing significant alignments: (Bits) Value
Ahg923788 jgi|Araly1|923788|scaffold_105069.1 2466 0.0
> Ahg923788 jgi|Araly1|923788|scaffold_105069.1
Length=1618
Score = 2466 bits (1335), Expect = 0.0
Identities = 1496/1573 (95%), Gaps = 14/1573 (1%)
Strand=Plus/Plus
Query 24 AATGGCGATTCGAACAGTCTCTTCTCTTGTTCGCGCTCTTTACCAAACCCCTAAATCTCA 83
|||||||||||||||| ||||||||||||||||||||||| |||||||||||||||||||
Sbjct 20 AATGGCGATTCGAACATTCTCTTCTCTTGTTCGCGCTCTTCACCAAACCCCTAAATCTCA 79
Query 84 ATCATTTCGCATCTTCTCTACACTTCTACACGATCCACCATCACCAGATCTAGTAAACGA 143
|||||||| |||||||||| ||||||||||||||||||||||| || |||||||||||
Sbjct 80 GTCATTTCGTTTCTTCTCTACTCTTCTACACGATCCACCATCACCCGAACTAGTAAACGA 139
Query 144 GATCTCCCGCGTCCTGAGCGACCACCGGAACCCTAAAGACGATCTCGAACACACTCTTGT 203
|||||||||||| |||||||| |||||||||||||||||||| ||||| |||||||| |
Sbjct 140 GATCTCCCGCGTTCTGAGCGATCACCGGAACCCTAAAGACGACCTCGAGCACACTCTCGC 199
Query 204 CGCTTACTCTCCCCGAGTTTCGTCAAATCTAGTCGAACAAGTATTGAAACGCTGCAAAAA 263
|||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||
Sbjct 200 CGCTTACTCTCCCCGAGTTTCGTCGAATCTAGTCGAACAAGTATTGAAACGCTGCAAAAA 259
Query 264 TCTCGGCTTTCCTGCTCACAGATTCTTTCTATGGGCAAGAAGAATCCCAGATTTTGCACA 323
|||||||||||||||||| ||||||||||||||||||| ||||||||||||||||| |||
Sbjct 260 TCTCGGCTTTCCTGCTCATAGATTCTTTCTATGGGCAAAAAGAATCCCAGATTTTGAACA 319
Query 324 TAGCTTGGAAAGTTATCACATTTTGGTTGAGATTTTGGGTAGTAGCAAGCAATTCGCTTT 383
|||||||||||||||||||||||||||||||||||||||| |||| ||||||||||||||
Sbjct 320 TAGCTTGGAAAGTTATCACATTTTGGTTGAGATTTTGGGTTGTAGTAAGCAATTCGCTTT 379
Query 384 GCTTTGGGACTTTTTAATCGAAGCTAGAGAGTATAATTACTTTGAGATTAGTTCTAAAGT 443
|||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||
Sbjct 380 GCTTTGGGACTTTTTAATCGAAGCTAGAGAGTATAATTACTTTGAGATTACTTCTAAAGT 439
Query 444 GTTTTGGATTGTGTTTAGAGCTTATAGTAGAGCTAATTTACCTAGTGAAGCTTGTAGAGC 503
|||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||
Sbjct 440 GTTTTGGATTGTGTTTAGAGCTTATAGTAGAGCTAATTTACCTAGTGAAGCTAGTAGAGC 499
Query 504 TTTTAATCGAATGGTTGAGTTTGGGATTAAGCCTTGTGTTGATGATCTTGATCAGCTTTT 563
||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 500 TTTTAATCGGATGGTTGAGTTTGGGATTAAGCCTTGTGTTGATGATCTTGATCAGCTTTT 559
Query 564 GCATTCGCTTTGCGATAAGAAACATGTGAATCATGCTCAAGAGTTTTTCGGTAAAGCGAA 623
||||||||||||||||| ||||||||||||||||||||| |||||||||| |||||||||
Sbjct 560 GCATTCGCTTTGCGATAGGAAACATGTGAATCATGCTCAGGAGTTTTTCGATAAAGCGAA 619
Query 624 AGGATTTGGGATTGTACCTAGTGCGAAGACGTATAGCATTTTGGTTAGAGGTTGGGCAAG 683
||| || ||||||||||| |||||||||||||||||||||||||||||||| ||||| ||
Sbjct 620 AGGGTTCGGGATTGTACCGAGTGCGAAGACGTATAGCATTTTGGTTAGAGGGTGGGCGAG 679
Query 684 AATCCGAGACGCGTCGGGTGCACGTAAGGTGTTTGATGAAATGCTTGAGAGA-AATTGTG 742
|||||||||||||||||||||||||||||||||||||||||||||||||| | |||||||
Sbjct 680 AATCCGAGACGCGTCGGGTGCACGTAAGGTGTTTGATGAAATGCTTGAGA-ATAATTGTG 738
Query 743 TTGTGGATTTGCTTGCTTACAATGCTCTTTTAGATGCTTTGTGTAAATCTGGTGATGTTG 802
||||||||||||||||||||||||||||||| || |||||||||||||||||||||||||
Sbjct 739 TTGTGGATTTGCTTGCTTACAATGCTCTTTTGGACGCTTTGTGTAAATCTGGTGATGTTG 798
Query 803 ATGGAGGTTATAAGATGTTTCAAGAAATGGGTAATCTTGGACTTAAACCAGACGCGTATA 862
|||||| |||||||||||||||||||||||||||||||||||||||||| || |||||||
Sbjct 799 ATGGAGCTTATAAGATGTTTCAAGAAATGGGTAATCTTGGACTTAAACCGGATGCGTATA 858
Query 863 GTTTCGCTATATTCATTCA-TGCGTACTGTGATGCGGGTGATGTTCACTCGGCTTATAAG 921
|||| || ||||||||||| | ||||||| ||||| | ||||||||||||||||||||
Sbjct 859 GTTTTGCGATATTCATTCACT-CGTACTGCGATGCAAGCGATGTTCACTCGGCTTATAAA 917
Query 922 GTACTTGATAGGATGAAAAGGTACGATCTTGTACCCAATGTGTACACGTTTAACCATATC 981
||||||||| ||||||||||||||||||||||||||||||||||||| ||||||||||||
Sbjct 918 GTACTTGATCGGATGAAAAGGTACGATCTTGTACCCAATGTGTACACATTTAACCATATC 977
Query 982 ATCAAAACACTCTGCAAGAACGAGAAAGTTGATGATGCTTATTTACTGTTAGACGAGATG 1041
||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||
Sbjct 978 ATCAAAACACTCTGCAAGAACGAGAAAGTTGATGATGCTTACTTACTGTTAGACGAGATG 1037
Query 1042 ATTCAAAAAGGAGCTAATCCGGATACTTGGACTTACAATTCGATAATGGCGTACCACTGC 1101
|||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||
Sbjct 1038 ATTCAAAAAGGAGCTAATCCGGATACTTGGACTTACAATTCGATAATGGCTTACCACTGC 1097
Query 1102 GATCACTGCGAAGTAAATCGAGCAACAAAGCTGTTATCGAGGATGGATAGAACCAAGTGT 1161
|||||||||||||| || |||||||||||||||||||| || ||||||||||||||||||
Sbjct 1098 GATCACTGCGAAGTGAACCGAGCAACAAAGCTGTTATCTAGAATGGATAGAACCAAGTGT 1157
Query 1162 TTACCAGATAGACACACTTACAATATGGTTCTCAAGTTGCTT-ATAAGAATAGGGAGATT 1220
||||| ||||||||||||||||| ||||||||||||||| || ||| |||||||||||||
Sbjct 1158 TTACCGGATAGACACACTTACAACATGGTTCTCAAGTTG-TTGATACGAATAGGGAGATT 1216
Query 1221 TGACCGCGCT-ACAGAGATATGGGAAGGAATGAGTGAGAGAAAGTTTTATCCAACGGTTG 1279
|||||||| | |||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1217 TGACCGCG-TGACAGAGATATGGGAAGGAATGAGTGAGAGAAAGTTTTATCCAACGGTTG 1275
Query 1280 CGACTTACACTGTGATGATTCATGGGTTGGTGAGAAAGAAAGGGAAGTTAGAGGAAGCTT 1339
|||||||||||||||||||||||||||| ||||| |||||||||||||||||||||||||
Sbjct 1276 CGACTTACACTGTGATGATTCATGGGTTAGTGAGGAAGAAAGGGAAGTTAGAGGAAGCTT 1335
Query 1340 GTAGATACTTTGAGATGATGATTGATGAAGGGATACCACCGTATTCGACAACGGTTGAGA 1399
|||| |||||||||||||||||||||||||||||||| ||||||||||||||||||||||
Sbjct 1336 GTAGGTACTTTGAGATGATGATTGATGAAGGGATACCGCCGTATTCGACAACGGTTGAGA 1395
Query 1400 TGTTGAGGAATCGGTTAGTCGGTTGGGGACAAATGGATGTTGTGGATGTTTTGGCAGGGA 1459
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1396 TGTTGAGGAATCGGTTAGTCGGTTGGGGACAAATGGATGTTGTGGATGTTTTGGCAGGGA 1455
Query 1460 AGATGGAGAGAAGCAGTTCTTGTTCGGTTCAAGATATGGCGGTTGAGATGAGAGGGAAGA 1519
|||||||||||||||||||||||||||||| |||||||||||||||||||||||| ||||
Sbjct 1456 AGATGGAGAGAAGCAGTTCTTGTTCGGTTCGAGATATGGCGGTTGAGATGAGAGGAAAGA 1515
Query 1520 GAAGGAGATTGGGACGTAGAAGTGAA--AA-T-A-G-TGAAGATGATGATGATGATTTTG 1573
||||||||||||||||| |||||||| || | | | ||| |||||||||||||||||||
Sbjct 1516 GAAGGAGATTGGGACGTCGAAGTGAAGGAAGTGAAGATGATGATGATGATGATGATTTTG 1575
Query 1574 AGCTTGAAAGAGA 1586
||||| |||||||
Sbjct 1576 AGCTTCAAAGAGA 1588
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 64601055520
Database: halleri_transcript_ahg.fa
Posted date: Sep 25, 2014 2:02 AM
Number of letters in database: 38,939,717
Number of sequences in database: 32,672
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5