BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: halleri_transcript_ahg.fa
32,672 sequences; 38,939,717 total letters
Query= AT1G52660.1
Length=1140
Score E
Sequences producing significant alignments: (Bits) Value
Ahg337420 jgi|Araly1|337420|fgenesh1_pg.C_scaffold_1003985 1801 0.0
Ahg904514 jgi|Araly1|904514|Al_scaffold_0003_1642 791 0.0
> Ahg337420 jgi|Araly1|337420|fgenesh1_pg.C_scaffold_1003985
Length=1140
Score = 1801 bits (975), Expect = 0.0
Identities = 1086/1141 (95%), Gaps = 2/1141 (0%)
Strand=Plus/Plus
Query 1 ATGGGAAAAGATTTCAAGAGTTTGGTTACTAGATGCATCTATGTTGGGAAGATGAATGAT 60
||||| |||||||| |||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1 ATGGGGAAAGATTTTAAGAGTTTGGTTACTAGATGCATCTATGTTGGGAAGATGAATGAT 60
Query 61 AATGCAAAGAAGCTGAAAATCGCGACGGAGGAGCTCAAAGATCTTGGAAACAACGTGATG 120
||||||||||||||||||||||| || || || |||||||||||||| | ||||||||||
Sbjct 61 AATGCAAAGAAGCTGAAAATCGCAACCGAAGAACTCAAAGATCTTGGCAGCAACGTGATG 120
Query 121 AAAAGAGTCAAGCTTTGTGAGGAGCAGCAACAGATGAAGCGGCTTGACAAAGTCCAAACA 180
|||||||||||| ||||||||||||||||||||||||||||||| |||||||| ||| ||
Sbjct 121 AAAAGAGTCAAGATTTGTGAGGAGCAGCAACAGATGAAGCGGCTAGACAAAGTTCAATCA 180
Query 181 TGGCTAAGACAAGCCGACACTGTTATTAAAGAAGCTGAGGAGTATTTCTTGATGTCTTCT 240
|||||||||||||| ||||||||||||||||| |||||||| ||||||||||||||||||
Sbjct 181 TGGCTAAGACAAGCTGACACTGTTATTAAAGAGGCTGAGGAATATTTCTTGATGTCTTCT 240
Query 241 TCGTCTTCTTCTTCTGGTTTGATATCGTCGAGCCACAAGATGGAGAAGAAGATTTGCAAG 300
|||||||||||||| ||||||||||| |||||||||||||||||||||||||||||||||
Sbjct 241 TCGTCTTCTTCTTCCGGTTTGATATCTTCGAGCCACAAGATGGAGAAGAAGATTTGCAAG 300
Query 301 AAGCTGAAAGAGGTTCAGGAGATTAAGAGCAGAGGAATGTTTGAAGTTGTTGCTGAGAGC 360
||||||||||||||||| ||||||||||||||||||||||||||||||||||| || |||
Sbjct 301 AAGCTGAAAGAGGTTCAAGAGATTAAGAGCAGAGGAATGTTTGAAGTTGTTGCGGAAAGC 360
Query 361 ACTGGAGGCATTGGAGGAGG-GGCGGGCGGCGGATTGACGATTAAGGATAGCGATGAGCA 419
| |||||||||||||||||| || ||| || ||||||||| |||||||||||||||||||
Sbjct 361 ATTGGAGGCATTGGAGGAGGAGG-GGGTGGTGGATTGACGGTTAAGGATAGCGATGAGCA 419
Query 420 GACGATTGGGTTAGAGGCGGTTTCGGGTTTGGTTTGGAGGTGTTTGACGATGGAGAACAC 479
|||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||
Sbjct 420 GACGATTGGGTTAGAGGCGGTTTCGGGTTTGGTTTGGAGGTGTTTGACCATGGAGAACAC 479
Query 480 TGGTATTATTGGATTATATGGTGTGGAAGGTGTTGGAAAGACGACTGTTTTGACTCAGGT 539
||| ||||||||||||||||||||||||||||||||||||||||| ||||||||||||||
Sbjct 480 TGGGATTATTGGATTATATGGTGTGGAAGGTGTTGGAAAGACGACGGTTTTGACTCAGGT 539
Query 540 TAATAACAGGTTGCTTCAACAGAAAGCAAATGGGTTTGATTTTGTTTTGTGGGTGTTTGT 599
|||||| |||||||||||||||||||| ||||||||||||||||||||||||||||||||
Sbjct 540 TAATAATAGGTTGCTTCAACAGAAAGCGAATGGGTTTGATTTTGTTTTGTGGGTGTTTGT 599
Query 600 GTCCAAGAACCTGAATCTTCAGAAGATTCAAGATACGATTAGGGAGAAGATTGGGTTCTT 659
||||||||| ||||||||| | ||||||||||| || || ||||||||||||||||||||
Sbjct 600 GTCCAAGAATCTGAATCTTGAAAAGATTCAAGACACAATCAGGGAGAAGATTGGGTTCTT 659
Query 660 GGATAGGACTTGGACGAGTAAGTCCGAGGAAGAGAAAGCTGCGAAGATCTTTGAGATCTT 719
||||||||| |||||||||||||||||||||||||||||||| |||||||||||||||||
Sbjct 660 GGATAGGACGTGGACGAGTAAGTCCGAGGAAGAGAAAGCTGCAAAGATCTTTGAGATCTT 719
Query 720 GAGTAAGAGACGGTTCGCTTTGTTTCTTGATGATGTTTGGGAGAAAGTTGATCTTGTGAA 779
||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||
Sbjct 720 GAGTAAGAGACGGTTTGCTTTGTTTCTTGATGATGTTTGGGAGAAAGTTGATCTTGTGAA 779
Query 780 AGCTGGAGTTCCGCCACCGGATGCGCAGAACCGGTCGAAGATAGTGTTCACGACATGTTC 839
|||||||||||||||||||||||| || ||||||||||||||||||||||||||||||||
Sbjct 780 AGCTGGAGTTCCGCCACCGGATGCACAAAACCGGTCGAAGATAGTGTTCACGACATGTTC 839
Query 840 CGAAGAAGTTTGTAAGGAGATGAGTGCACAGACAAAGATCAAAGTAGAGAAATTGGCATG 899
|||||||||||||||||||||||||||||| || ||||||||||||||||||||||| ||
Sbjct 840 CGAAGAAGTTTGTAAGGAGATGAGTGCACAAACGAAGATCAAAGTAGAGAAATTGGCGTG 899
Query 900 GGAACGAGCTTGGGACTTGTTTAAGAAGAATGTTGGAGAAGATACTATAAAGAGCCACCC 959
|||||||||||||||||||||||||||||||||||||||||||||| | |||||||||||
Sbjct 900 GGAACGAGCTTGGGACTTGTTTAAGAAGAATGTTGGAGAAGATACTGTGAAGAGCCACCC 959
Query 960 AGACATAGCCAAAGTGGCTCAAGAGGTTGCAGCCAGGTGCGACGGTCTTCCTCTAGCTTT 1019
|| |||||||| |||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 960 GGATATAGCCAAGGTGGCTCAAGAGGTTGCAGCCAGGTGCGACGGTCTTCCTCTAGCTTT 1019
Query 1020 GGTCACCATTGGCCGAGCCATGGCCTCCAAGAAAACCCCTCAAGAATGGCGTGACGCCTT 1079
|||||||||||||||||||||||| ||||||||||| |||||||||||||||||||| ||
Sbjct 1020 GGTCACCATTGGCCGAGCCATGGCTTCCAAGAAAACTCCTCAAGAATGGCGTGACGCATT 1079
Query 1080 GTACATCTTGAGTAACTCTCCTCCTAATTTCTCAGTTCTAAAGTTACTGGACAGGAACTA 1139
||||||||||||||||||||| ||||||||||||||||| ||||||||||||||||||||
Sbjct 1080 GTACATCTTGAGTAACTCTCCACCTAATTTCTCAGTTCTCAAGTTACTGGACAGGAACTA 1139
Query 1140 G 1140
|
Sbjct 1140 G 1140
> Ahg904514 jgi|Araly1|904514|Al_scaffold_0003_1642
Length=1125
Score = 791 bits (428), Expect = 0.0
Identities = 917/1145 (80%), Gaps = 65/1145 (6%)
Strand=Plus/Plus
Query 1 ATGGGAAAAGATTTCAAGAGTTTGGTTACTA-GATGCATCTATGTTGG-GAAGATGAATG 58
||||||||||||||||||||| |||| || | |||||||||| || || |||| ||| |
Sbjct 1 ATGGGAAAAGATTTCAAGAGTATGGTGAC-ACGATGCATCTACGTAGGAAAAGA-GAACG 58
Query 59 ATAATGCAAAGAAGCTGAAAATCGCGACGGAGGAGCTCAAAGATCTT-GGAAACAACGTG 117
|||| | | ||| ||||||| |||||||||||||||||| ||| || | ||||| |||
Sbjct 59 ATAACGTGACGAAACTGAAAACCGCGACGGAGGAGCTCAAGGAT-TTACGCAACAATGTG 117
Query 118 ATGAAAAGAGTCAAGCTTTGTGAGGAGCAGCA-ACAGATGAAGCGGCTTGACAAAGTCCA 176
|||||||| ||||| | | ||| || ||||| | || ||||||| || || ||||||||
Sbjct 118 ATGAAAAGGGTCAAAATGTATGAAGACCAGCAGA-AGCTGAAGCGTCTCGAGAAAGTCCA 176
Query 177 -AACATGGCTAAGACAAGCCGACACT-GTTATTAAAGAAGCTGAGGAGTATTTCTTGAT- 233
| ||||| ||||||||||| | | || |||||||| || || | || |||||
Sbjct 177 GGTC-TGGCTTAGACAAGCCGA-TGTAGCGATCAAAGAAGC--AGAAGAAATT-TTGATA 231
Query 234 --G-T-CT-TCTTCGTCTTCTTCTTCTGG-T-TTG-AT-ATCGTCG-AGCCACAAGATGG 283
| | | ||||| |||||||| ||| | | || || | | | ||||||||||
Sbjct 232 GCGATGATGTCTTCTTCTTCTTCAAATGGATCAAGCATGAT-G-AGTTGTCACAAGATGG 289
Query 284 AGAAGAAGATTTGCAAGAAGCTGAAAGAGGTTCAGGAGATTAAGAGCAGAGGAATGTTTG 343
| |||||| ||||||||||||||||||||||| | ||||| ||||| ||||||| || |
Sbjct 290 ACAAGAAGCTTTGCAAGAAGCTGAAAGAGGTTAATGAGATAAAGAGTAGAGGAACATTCG 349
Query 344 AAGTTGTTGCTGAGAGCACTGGAGGCATTGGAGGAGGGGCGGGCGGCGGA-TT-GA-CGA 400
| || || | ||||| | | | |||||||| ||| | | | || || || ||
Sbjct 350 ATGTGGTGGTTGAGA--A-TAGTGGCATTGGTGGA---TC--GATGATGATTTCGACCG- 400
Query 401 TTAAGGATAGCGATGAGCAGACGATTGGGTTAGAGGCGGTTTCGGGTTTGGTTTGGAGGT 460
|| ||||| ||||| |||||| |||| || |||||||||||||| | || ||| |||
Sbjct 401 TT---GATAGAGATGATCAGACGGTTGGATTGGAGGCGGTTTCGGGGCTAGTGTGGCGGT 457
Query 461 GTTTGACGATGGAGAACACTGGTATTATTGGATTATATGGTGTGGAAGGTGTTGGAAAGA 520
|| ||||| |||| ||||| || |||||||| || || || |||||||||||||| ||||
Sbjct 458 GTATGACGGTGGATAACACCGGGATTATTGGGTTGTACGGCGTGGAAGGTGTTGGGAAGA 517
Query 521 CGACTGTTTTGACTCAGGTTAATAACAGGTTGCTTCAACAGAAAG-CAAATGGGTTTGAT 579
|||| || ||||||||||| || |||||||||||||| || ||| ||||||||||||
Sbjct 518 CGACGGTGTTGACTCAGGTCAACAACAGGTTGCTTCAGCA-CAAGTTAAATGGGTTTGAC 576
Query 580 TTTGT-TTTGTGGGTGTTTGTGTCCAAGAACCTGAATCTTCAGAA-GATTCAAGATACGA 637
||||| || |||||||||||||||||||| ||||||||| | || |||||| || || |
Sbjct 577 TTTGTGATT-TGGGTGTTTGTGTCCAAGAATCTGAATCTTGA-AAGGATTCAGGACACTA 634
Query 638 TTAGGGAGAAGATTGGG-TTCTTGGATAGGACT-TGGACGAGTAAGTCCGAGGAAGAGAA 695
| | |||||||| ||| ||||| |||||| | ||||||| ||| | |||||||||||
Sbjct 635 TCCGAGAGAAGATAGGGTTTCTT-GATAGG-TTGTGGACGAACAAGACAGAGGAAGAGAA 692
Query 696 AGCTGCG-AAGATCTTTGAGAT-CTTGAGTAAGAGACGGTTCGCTTTGTTTCTTGATGAT 753
||| | | |||||||| ||||| ||| || || ||||| ||||||||||| ||||| ||
Sbjct 693 AGCCG-GTAAGATCTTCGAGATACTT-AGCAAAAGACGATTCGCTTTGTTCCTTGACGAC 750
Query 754 GTTTGGGAGAAAGTTGATCTTGTGAAAGCTGGAGTTCCGCCACCGGATGCG-CAGAACCG 812
|||||||||||||| ||||| ||||||||||| || || || ||||||| | ||||| ||
Sbjct 751 GTTTGGGAGAAAGTCGATCTAGTGAAAGCTGGTGTGCCACCGCCGGATG-GACAGAA-CG 808
Query 813 G-TCGAAGATAGTGTTCACGACATGTTCCGAAGAAGTTTGTAAGGAGATGAGTGCACAGA 871
| || ||||| ||||| || || ||||| || || |||||| ||| ||| | ||||| |
Sbjct 809 GATCAAAGATCGTGTTTACAACCTGTTCGGACGAGGTTTGTCGGGAAATGGGAGCACAAA 868
Query 872 CAAAGATCAAAGTAGAGAAATTGGCATGGGA-ACGAGCTTGGGACTTGTTTAAGAAGAAT 930
| ||||||||| | ||||| || ||||||| | ||||||||||||||||||||||||||
Sbjct 869 CTAAGATCAAAATGGAGAAGCTGCCATGGGAGA-GAGCTTGGGACTTGTTTAAGAAGAAT 927
Query 931 GTTGGAGAAGATACTA-TAAAGAGCCACCCAGACATAGCCAAAGTGGCTCAAGAGGTTGC 989
| ||||||||||| | | ||||||||||| |||||| ||||||| ||||||||||||||
Sbjct 928 GCGGGAGAAGATAC-AGTGAAGAGCCACCCGGACATAACCAAAGTTGCTCAAGAGGTTGC 986
Query 990 AGCCAGGTGCGACGGTCTTCCTCTAGCTTTGGTCACCATTGGCCGAGCCATGGCCTCCAA 1049
||||| |||||| || || || || ||||||||||| |||||||||||||||||||| ||
Sbjct 987 AGCCAAGTGCGATGGCCTCCCGCTGGCTTTGGTCACAATTGGCCGAGCCATGGCCTCTAA 1046
Query 1050 GAAAACCCCTCAAGAATGGCGTGACGCCTTGTACATCTTGAGTAACTCTCCTCCTAATTT 1109
|||||| ||||| |||||||||||||| ||||||||||||||||||||||||||||||||
Sbjct 1047 GAAAACACCTCAGGAATGGCGTGACGCTTTGTACATCTTGAGTAACTCTCCTCCTAATTT 1106
Query 1110 CTCAG 1114
|||||
Sbjct 1107 CTCAG 1111
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 42507052455
Database: halleri_transcript_ahg.fa
Posted date: Sep 25, 2014 2:02 AM
Number of letters in database: 38,939,717
Number of sequences in database: 32,672
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5