BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: halleri_transcript_ahg.fa
32,672 sequences; 38,939,717 total letters
Query= AT1G52670.1
Length=1154
Score E
Sequences producing significant alignments: (Bits) Value
Ahg923790 jgi|Araly1|923790|scaffold_105071.1 1334 0.0
> Ahg923790 jgi|Araly1|923790|scaffold_105071.1
Length=873
Score = 1334 bits (722), Expect = 0.0
Identities = 822/871 (94%), Gaps = 4/871 (0%)
Strand=Plus/Plus
Query 133 TCCTACTCCAGTCTTCCTCCATGAATTCCTGTAGCTTAGGAGCTCCTAAAGTTAGAATTT 192
|||| ||||| ||||||||||||||||||||||||||||||||||||| |||||||||||
Sbjct 3 TCCTGCTCCAATCTTCCTCCATGAATTCCTGTAGCTTAGGAGCTCCTAGAGTTAGAATTT 62
Query 193 TTGCAACAAATTTCAGTAGATTAAGATGTGGAAACTTGCTGATACCGAACAATCAAAGAC 252
|||||||| |||||||||||||||||||||||||||||||||||| |||||||||||||
Sbjct 63 CTGCAACAAGTTTCAGTAGATTAAGATGTGGAAACTTGCTGATACCCAACAATCAAAGAC 122
Query 253 TATTTGTTGACCAAAGCCCTATGAAGTATCTGAGTCTGA-GA--ACGACTCTGCGATCTG 309
| ||| ||||||||||||| || ||| |||||| || || || ||||||||||||||||
Sbjct 123 TTTTTATTGACCAAAGCCCCATCAAGAATCTGACTCAGAGGACGACGACTCTGCGATCTG 182
Query 310 TGAAAGCTATCCAATTGTCTACTGTCCCACCTGCAGAAACAGAAGCTATTGCAGACGTAA 369
||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||
Sbjct 183 TGAAAGCTATCCAATTGTCTACTGTCCCACCTGCAGAAACACAAGCTATTGCAGACGTAG 242
Query 370 AAGATTCTGACGAGACCAAATCAACTGTTGTGAATACTCACCTCATGCCCAAGTCCTCCG 429
|||||||||| ||||||||||||||||||||||||||||| || || ||||| ||||| |
Sbjct 243 AAGATTCTGAAGAGACCAAATCAACTGTTGTGAATACTCAGCTTATTCCCAACTCCTCTG 302
Query 430 AGGTGGAAGCACTCATCAGCGAAATCACCGATTCCTCATCCATTGCAGAGTTTGAACTCA 489
||||| ||||||| ||||| ||||| || |||||| |||| ||||||||||||||||| |
Sbjct 303 AGGTGAAAGCACTTATCAGTGAAATAACTGATTCCACATCAATTGCAGAGTTTGAACTGA 362
Query 490 AACTGGGAGGTTTCCGCCTGTATGTAGCAAGGAAATTAACTGACGAAAGTAGTCCACCAC 549
||||||||||||||||||| |||||||||||||||||| ||||| ||||||||||||| |
Sbjct 363 AACTGGGAGGTTTCCGCCTATATGTAGCAAGGAAATTAGCTGACCAAAGTAGTCCACCGC 422
Query 550 CTCAGCAAATTCAGCCTGTGGTTGCTGCAAGCGCAACTCCTGAGGGGGTTCACACTAATG 609
|||||||||||| ||||||||||||||||||||||||||||||||||||||| || ||||
Sbjct 423 CTCAGCAAATTCCGCCTGTGGTTGCTGCAAGCGCAACTCCTGAGGGGGTTCATACAAATG 482
Query 610 GCTCAGCTACTTCTTCGTCATTGGCTATCACAAAAACATCATCTTCTTCGGCAGACAGAC 669
||||||| ||||||||||||||||||||||||||||||||| ||||||||||||||||||
Sbjct 483 GCTCAGCCACTTCTTCGTCATTGGCTATCACAAAAACATCAACTTCTTCGGCAGACAGAC 542
Query 670 CACAAACACTCGCTAACAAAGCTGCTGATCAGGGTTTAGTGATTCTCCAATCTCCAACGG 729
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 543 CACAAACACTCGCTAACAAAGCTGCTGATCAGGGTTTAGTGATTCTCCAATCTCCAACGG 602
Query 730 TCGGTTATTTCAGGAGATCCAAGACCATAAAAGGGAAACGCACTCCTACAATCTGTAAAG 789
|||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||
Sbjct 603 TCGGTTATTTCAGGAGATCCAAGACCATAAAAGGCAAACGCACTCCTACAATCTGTAAAG 662
Query 790 AGAAAGACATAGTGAAAGAAGGTCAAGTTCTATGCTACATTGAACAGCTCGGTGGCCAAA 849
|||||||||||||||||||||||||||||||||||||||| ||||| |||||||||||||
Sbjct 663 AGAAAGACATAGTGAAAGAAGGTCAAGTTCTATGCTACATCGAACAACTCGGTGGCCAAA 722
Query 850 TCCCAGTTGAGTCTGATGTTTCCGGAGAGATTGTCAAAATACTCCGCGAAGATGGCGAGC 909
||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||
Sbjct 723 TCCCAGTTGAGTCTGATGTTTCCGGTGAGATTGTCAAAATACTCCGCGAAGATGGCGAGC 782
Query 910 CTGTAGGATACAACGATGCTCTCATCACAGTACTTCCCTCATTTCCTGGCATCAAGAAGC 969
||||||||||||| ||||||||||||||||| ||||| ||||||||||||||||||||||
Sbjct 783 CTGTAGGATACAATGATGCTCTCATCACAGTTCTTCCTTCATTTCCTGGCATCAAGAAGC 842
Query 970 TTCAGTAAGAACTGATTTTGGCTTAA-TTGT 999
|||||||||||||||||||||||||| ||||
Sbjct 843 TTCAGTAAGAACTGATTTTGGCTTAAATTGT 873
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 43040773293
Database: halleri_transcript_ahg.fa
Posted date: Sep 25, 2014 2:02 AM
Number of letters in database: 38,939,717
Number of sequences in database: 32,672
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5