BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: halleri_transcript_ahg.fa
32,672 sequences; 38,939,717 total letters
Query= AT1G52680.1
Length=681
Score E
Sequences producing significant alignments: (Bits) Value
Ahg474393 jgi|Araly1|474393|fgenesh2_kg.1__4347__AT1G52680.1 782 0.0
> Ahg474393 jgi|Araly1|474393|fgenesh2_kg.1__4347__AT1G52680.1
Length=580
Score = 782 bits (423), Expect = 0.0
Identities = 533/583 (91%), Gaps = 20/583 (3%)
Strand=Plus/Plus
Query 6 TTCTACAAGCTTACAATCTTAATTAATTAAGACATTTCACAGAACAACCAAGAAGATGTC 65
|||||||| |||| ||||||||||| ||||||||||||||||| ||||||| || |||||
Sbjct 1 TTCTACAAACTTATAATCTTAATTATTTAAGACATTTCACAGATCAACCAAAAATATGTC 60
Query 66 GTCGAGCCAGCAGTTGAGCCACAGCGCCGGAGAAGTCACCGGTCAAGTTCAGCTGAAGAA 125
|||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 61 GTCGAGCCAGCAATTGAGCCACAGCGCCGGAGAAGTCACCGGTCAAGTTCAGCTGAAGAA 120
Query 126 GGAAGAGTACTTGAACAATGTATCACACGCAATGAACCAGAATGCTGATCATCACACCCA 185
||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||
Sbjct 121 GGAAGAGTACTTGAACAATGTATCACACGCAATGAACCAGAATGCTGATCATCACACTCA 180
Query 186 CTCACAGTCACAGTTACACTCAGAGCATGATCAGAACAATCCTTCCCTAATTTCTCAAGC 245
||||||||||||||||||||||||||||||||||| |||||||||||||||||| || ||
Sbjct 181 CTCACAGTCACAGTTACACTCAGAGCATGATCAGAGCAATCCTTCCCTAATTTCCCAGGC 240
Query 246 CTCTAGTGTCATCCAACAGACGGGTGGACAAGTGAAGAACATGGCACAAGGAGCAGCCGA 305
||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||
Sbjct 241 CTCTAGTGTCATCCAACAGACTGGTGGACAAGTGAAGAACATGGCACAAGGAGCAGCCGA 300
Query 306 TGCTGTGAAGAACACTCTCGGGATGAGTCCGGCTACCAACAGCCCTAGCAGCCCGGCTGG 365
|||||||||||||||||||||||||||||||| |||||||||||||||||||| |||||
Sbjct 301 CGCTGTGAAGAACACTCTCGGGATGAGTCCGGCCACCAACAGCCCTAGCAGCCCCGCTGG 360
Query 366 CACGACCCGCTCGAACAAGCCCGGTTCCAAGATTATCTAAAAAGGAGTTATTTAAGAAAT 425
||| ||||||||| ||||||||||||||||| ||| |||||| || ||||||||||| |
Sbjct 361 GACGGCCCGCTCGAGCAAGCCCGGTTCCAAGAATATTTAAAAATGAATTATTTAAGAAGT 420
Query 426 ATTGGCTCAATCTTTTCCAATAAAACAAAAATGAATATTGTTTTCTGATTGCTTTGGTTG 485
|||||| |||||||||||||||||| |||||||||| |||||||||||||||||||||||
Sbjct 421 ATTGGCCCAATCTTTTCCAATAAAATAAAAATGAATCTTGTTTTCTGATTGCTTTGGTTG 480
Query 486 TTCAAATTTCTGAATTTTGTGGTATAGTACTGTATGTTGGAGACATTTCTACGTGTCTTA 545
|| ||||||||||||||||||| | | || || || | | | ||||||||
Sbjct 481 TTTAAATTTCTGAATTTTGTGG-A--G-AC---AT-TT--ATA-A-------GTGTCTTA 522
Query 546 TATAACCCCTAGTAAGGGTTTTTATATAATAAATTAGTCATAT 588
|| | |||||||| ||||||||||||| |||||||||||||||
Sbjct 523 TA-A-CCCCTAGTGAGGGTTTTTATATTATAAATTAGTCATAT 563
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 25008633552
Database: halleri_transcript_ahg.fa
Posted date: Sep 25, 2014 2:02 AM
Number of letters in database: 38,939,717
Number of sequences in database: 32,672
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5