BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: halleri_transcript_ahg.fa
32,672 sequences; 38,939,717 total letters
Query= AT1G52690.1
Length=862
Score E
Sequences producing significant alignments: (Bits) Value
Ahg474395 jgi|Araly1|474395|fgenesh2_kg.1__4349__AT1G52690.1 1009 0.0
> Ahg474395 jgi|Araly1|474395|fgenesh2_kg.1__4349__AT1G52690.1
Length=752
Score = 1009 bits (546), Expect = 0.0
Identities = 642/688 (93%), Gaps = 8/688 (1%)
Strand=Plus/Plus
Query 76 CGAATTTCTTCGAAGAGTGAAAATGGCGTCTCATCAAGAACAGAGTTACAAAGCTGGTGA 135
||| ||| ||||||||| ||||||||||||||||||||||||||||||||||||||||||
Sbjct 46 CGAGTTTTTTCGAAGAGAGAAAATGGCGTCTCATCAAGAACAGAGTTACAAAGCTGGTGA 105
Query 136 AACCAGAGGCAAGGCTCAGGAGAAAACTGGGGAAGCTATGGGAACGATGGGGGACAAAAC 195
||| |||||||||| |||||||||||| ||||||||||||||||| |||||||| |||||
Sbjct 106 AACTAGAGGCAAGGTTCAGGAGAAAACAGGGGAAGCTATGGGAACCATGGGGGAGAAAAC 165
Query 196 ACAAGCAGCTAAGGACAAAACTCAAGAGACAGCCCAGTCAGCCCAACAAAAGGCTCATGA 255
||||||||||||||| |||||||||||||||||||| |||||| ||||||||||||||||
Sbjct 166 ACAAGCAGCTAAGGAAAAAACTCAAGAGACAGCCCAATCAGCCGAACAAAAGGCTCATGA 225
Query 256 AACAGCTCAGTCAGCTAAAGACAAGACGTCTCAAGCTGCACAAACGACTCAAGAGAGAGC 315
||||||||||||||||||||||||||| |||||||||||||| ||||||||| |||||||
Sbjct 226 AACAGCTCAGTCAGCTAAAGACAAGACATCTCAAGCTGCACAGACGACTCAACAGAGAGC 285
Query 316 TCAAGAGTCCAAAGACAAGACAGGAAGCTACATGTCGGAAACTGGAGAAGCAATCAAGAA 375
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 286 TCAAGAGTCCAAAGACAAGACAGGAAGCTACATGTCGGAAACTGGAGAAGCAATCAAGAA 345
Query 376 CAAGGCACACGATGCAGCTGAATATACCAAAGAGACTGCAGAAGCAGGTAAGGAGAAGAC 435
|||| |||| |||||||| |||||||||||||||||||||||||||||||||||||||||
Sbjct 346 CAAGTCACAAGATGCAGCAGAATATACCAAAGAGACTGCAGAAGCAGGTAAGGAGAAGAC 405
Query 436 CAGTGGGATCTTGGGCCAGACCGGTGAGCAGGTGAAACAGATGGCTATGGGAGCTACTGA 495
||||||||||||||||||||||||||||| || ||||||||||||||||||||||||||
Sbjct 406 GAGTGGGATCTTGGGCCAGACCGGTGAGCATGTAAAACAGATGGCTATGGGAGCTACTGA 465
Query 496 TGCGGTGAAGCACACTTTAGGGCTTCGCACTGATGAAGGAAACAAAGAACATGTTTCTTC 555
||| ||||||||||||||||||||| || |||||||||||||||||||||| ||||||||
Sbjct 466 TGCAGTGAAGCACACTTTAGGGCTTGGCGCTGATGAAGGAAACAAAGAACAAGTTTCTTC 525
Query 556 AGCTCCAAGTACTACTACTACGACCACTACTCGTGAGACACAGAGGAAGTGAAGA-G-G- 612
|||||||||||||||||| |||||||||||||||||||||||||||||||||| | |
Sbjct 526 AGCTCCAAGTACTACTAC---GACCACTACTCGTGAGACACAGAGGAAGTGAAGAAGAGG 582
Query 613 ATAAATATTTGTTTCGTGTTCGTGGTTTTCATGTTTGTTTGCTTTGATTAGTGTTTGTTG 672
|||||||||||||| |||||| |||||||||||||||||||||||| |||||||||||||
Sbjct 583 ATAAATATTTGTTTTGTGTTCTTGGTTTTCATGTTTGTTTGCTTTGGTTAGTGTTTGTTG 642
Query 673 CGTTCGTGAGGTTATGCCGATCCTTGTTGTTGTTTATTGGGTTTGAATGTACTTCTACGT 732
||||||||| ||||| |||||| |||||||||||||||||||||||||||| |||||
Sbjct 643 TGTTCGTGAGATTATGTTTATCCTTCTTGTTGTTTATTGGGTTTGAATGTACTTTTACGT 702
Query 733 ATTATCATGTA--ATGGTTTTCTTTTAT 758
||||| || | ||||||||||| |||
Sbjct 703 ATTATAATATGCGATGGTTTTCTTCTAT 730
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 31908881529
Database: halleri_transcript_ahg.fa
Posted date: Sep 25, 2014 2:02 AM
Number of letters in database: 38,939,717
Number of sequences in database: 32,672
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5