BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: halleri_transcript_ahg.fa
32,672 sequences; 38,939,717 total letters
Query= AT1G52695.1
Length=942
Score E
Sequences producing significant alignments: (Bits) Value
Ahg474396 jgi|Araly1|474396|fgenesh2_kg.1__4350__AT1G52695.1 1339 0.0
Ahg923797 jgi|Araly1|923797|scaffold_105078.1 405 3e-112
> Ahg474396 jgi|Araly1|474396|fgenesh2_kg.1__4350__AT1G52695.1
Length=887
Score = 1339 bits (725), Expect = 0.0
Identities = 846/902 (94%), Gaps = 18/902 (2%)
Strand=Plus/Plus
Query 4 TTTCATCTCTAGTGCAAGTTAAAACCTTCCGAAATAATAATATaaaaaaaaaaaaTATTC 63
|||||||||||||||||||||||| ||||||||||||||||||||||| |||| |||||
Sbjct 1 TTTCATCTCTAGTGCAAGTTAAAAGCTTCCGAAATAATAATATAAAAACAAAAGTTATTC 60
Query 64 TCATTAGAGCATGGCTTCTGGTAGCATAAACGTAAGTGGCTTGGAATTTGGACAGATTAA 123
||||| ||||||||||||||||||| |||||||||||||||||||||||||||| ||||
Sbjct 61 TCATTGGAGCATGGCTTCTGGTAGCGGAAACGTAAGTGGCTTGGAATTTGGACAGGTTAA 120
Query 124 TACT-GTTTACCCCACAGGAATTCATAAAGCTACTATAGTCTGGCTACATGACGTAGGA- 181
| | || | | ||||||||||||||||||||||||| ||||||||||||||||| ||
Sbjct 121 T-GTCATTAAACACACAGGAATTCATAAAGCTACTATAATCTGGCTACATGACGTA-GAC 178
Query 182 AACACAGGCTTCAACTCACTTGAGCCTCTGCAAAATTTGCGTCTTCCCAATATAAAATGG 241
|||||||||||| |||||||||||||||||| ||||||||||||||||||||||||||||
Sbjct 179 AACACAGGCTTCGACTCACTTGAGCCTCTGCGAAATTTGCGTCTTCCCAATATAAAATGG 238
Query 242 ATTTGTCCGACTGCTCCTAGACGTCGTGTTACTTCCTTGGGTGGAGAGATAACCAATGCA 301
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 239 ATTTGTCCGACTGCTCCTAGACGTCGTGTTACTTCCTTGGGTGGAGAGATAACCAATGCA 298
Query 302 TGGTGCGACATCGCAAAAGTTTCTGAGAACATGCAAGATGATTTTGGAACTTTAAATTAT 361
|||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 299 TGGTGCGACATCACAAAAGTTTCTGAGAACATGCAAGATGATTTTGGAACTTTAAATTAT 358
Query 362 GTAAATGAATATATTAC-TAGCCTTTTCTCTAATGAACCACAAAATGTCATAAAAGGAGT 420
||||||||||||||||| || |||||||||| ||||||||||||||| |||||||||||
Sbjct 359 GTAAATGAATATATTACCTA-CCTTTTCTCTTCTGAACCACAAAATGTGATAAAAGGAGT 417
Query 421 GGCAGGTCTCGGCTTGGGTGCAGCACAAGCTCTTTATTATACGAGTTGTTATGCCTTTGG 480
||||||| ||||||||||||||||||||||||| ||||||||||||||||||||||||||
Sbjct 418 GGCAGGTATCGGCTTGGGTGCAGCACAAGCTCTCTATTATACGAGTTGTTATGCCTTTGG 477
Query 481 ATGGGTTCCCATAAACCCACAAATTGTTATAGGGATCAATGGTTGGCTTCCTGGCTGGAG 540
||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||
Sbjct 478 ATGGGTTCCCATAAACCCACAAATTACTATAGGGATCAATGGTTGGCTTCCTGGCTGGAG 537
Query 541 GAGATTAGAATACAATATGAATAATACTAATTTTGGGACCGCAAATCGTGCTGCAGCATC 600
|||||| ||||||||||||||||||||||||||||||||||||||||||||||| |||||
Sbjct 538 GAGATTGGAATACAATATGAATAATACTAATTTTGGGACCGCAAATCGTGCTGCCGCATC 597
Query 601 AAAAATCTTAATTCTGCATGGAACGTCTGATGATGTAGTTCCCTCTTCATTCGGATACAG 660
||||||||||||||||||||||||||||||||||||||||||||| ||||| ||||||||
Sbjct 598 AAAAATCTTAATTCTGCATGGAACGTCTGATGATGTAGTTCCCTCCTCATTTGGATACAG 657
Query 661 ATGTGCTGACTCCCTTCGCATGGCTGGATTTCCAACCTTGTTCAAACAATGTGGAGGGGA 720
||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||
Sbjct 658 ATGTGCTGACTCCCTTCGCGTGGCTGGATTTCCAACCTTGTTCAAACAATGTGGAGGGGA 717
Query 721 TCATGTAATTAATGAGATCCGTGTCTGGCTCACAAACCTTGGGCTTTGAGGATATGGTTA 780
|||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 718 TCATGTAACGAATGAGATCCGTGTCTGGCTCACAAACCTTGGGCTTTGAGGATATGGTTA 777
Query 781 ATTTCTGCATAAAGAAAACAAATGGGGAGCAAAACTATTATCGTACAATATAATAAAGTG 840
| |||||||||||| ||| || |||||| ||||||||| |||||||||||||||||||
Sbjct 778 AATTCTGCATAAAGTAAAGAATTGGGGAACAAAACTAT---CGTACAATATAATAAAGTG 834
Query 841 TTTAGTTTTGAGCTTTCGTTTTTTGTCTTTGTTATTCATAATCAATAGTTAATGTATTAT 900
||| |||| ||| ||||| |||| ||||||||||||||||||||||||||||| |
Sbjct 835 TTT--TTTT----TTT--TTTTT-GTCTATGTTATTCATAATCAATAGTTAATGTATTCT 885
Query 901 TC 902
||
Sbjct 886 TC 887
> Ahg923797 jgi|Araly1|923797|scaffold_105078.1
Length=598
Score = 405 bits (219), Expect = 3e-112
Identities = 264/286 (92%), Gaps = 2/286 (1%)
Strand=Plus/Plus
Query 434 TTGGGTGCAGCACAAGCTCTTTATTATACGAGTTGTTATGCCTTTGGATGGGTTCCCATA 493
|||||||||||||||||||| |||||||||||||||||||| |||||||||||||| |||
Sbjct 267 TTGGGTGCAGCACAAGCTCTCTATTATACGAGTTGTTATGCTTTTGGATGGGTTCCTATA 326
Query 494 AACCCACAAATTGTTATAGGGATCAATGGTTGGCTTCCTGGCTGGAGGAGATTAGAATAC 553
| |||||||||||||||||||||||||||||||||||||||||||||||| |||||||||
Sbjct 327 AGCCCACAAATTGTTATAGGGATCAATGGTTGGCTTCCTGGCTGGAGGAGCTTAGAATAC 386
Query 554 AATATGAATAATACTAATTTTGGGACCGCAAATCGTGCTGCAGCATCAAAAATCTTAATT 613
|||||| |||||||||||||||||| ||||||||||||||| ||||| ||||||| ||
Sbjct 387 AATATGTGTAATACTAATTTTGGGACAGCAAATCGTGCTGCAACATCACGAATCTTACTT 446
Query 614 CTGCATGGAACGTCTGATGATGT-AGTTCCCTCTTCATTCGGATACAGATGTGCTGACTC 672
|||||||||| ||||||||||| | |||||||| |||| ||||||| ||||||||||||
Sbjct 447 ATGCATGGAACTTCTGATGATGTTA-TTCCCTCTGCATTTGGATACAAATGTGCTGACTC 505
Query 673 CCTTCGCATGGCTGGATTTCCAACCTTGTTCAAACAATGTGGAGGG 718
|||||| ||| |||||||||||||||||||||||||||| ||||||
Sbjct 506 CCTTCGAATGTCTGGATTTCCAACCTTGTTCAAACAATGCGGAGGG 551
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 34958714889
Database: halleri_transcript_ahg.fa
Posted date: Sep 25, 2014 2:02 AM
Number of letters in database: 38,939,717
Number of sequences in database: 32,672
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5