BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: halleri_transcript_ahg.fa
32,672 sequences; 38,939,717 total letters
Query= AT1G52696.1
Length=514
Score E
Sequences producing significant alignments: (Bits) Value
Ahg923796 jgi|Araly1|923796|scaffold_105077.1 571 1e-162
Ahg474396 jgi|Araly1|474396|fgenesh2_kg.1__4350__AT1G52695.1 481 3e-135
Ahg923797 jgi|Araly1|923797|scaffold_105078.1 470 5e-132
> Ahg923796 jgi|Araly1|923796|scaffold_105077.1
Length=712
Score = 571 bits (309), Expect = 1e-162
Identities = 447/509 (88%), Gaps = 27/509 (5%)
Strand=Plus/Plus
Query 10 ATAAAATGGA-TTGTCCCGACTGCTCCTATGCGTCCCGTTACCTCCATAGGCGGGGAGGT 68
|||||||||| ||| |||||||||||||| |||||||||||||||| | || ||||||||
Sbjct 171 ATAAAATGGATTTG-CCCGACTGCTCCTAAGCGTCCCGTTACCTCCTTGGGTGGGGAGGT 229
Query 69 AACCACTGCATGTAAGATTAGATTAATCAGGGTGCGACATGACAAAACCTTCTGAGAACA 128
||||||||| || ||||||||||||||||| ||||||||||||
Sbjct 230 AACCACTGC----------------AT---GGTGCGACATGACAAAAGCTTCTGAGAACA 270
Query 129 TGCTAGATGATTTTGAAAATTTAAATTATACAAACTCATT-TATTACGAGCCTTTTCTCT 187
|||||||||||||||||||||||||| || ||| | | | |||||| ||| ||||||||
Sbjct 271 TGCTAGATGATTTTGAAAATTTAAATGATGTAAA-TGAATATATTACCAGCATTTTCTCT 329
Query 188 TCTGAACCAGACCATGTTATGAAAGGAGTAGGAGGAATCGGCTTGGGTGCAGCACAAGCT 247
| ||||||||| |||||||||||||| ||||||||||||||||||||||||||||||||
Sbjct 330 TGTGAACCAGAAAATGTTATGAAAGGACTAGGAGGAATCGGCTTGGGTGCAGCACAAGCT 389
Query 248 CTATATTATACGAGTTGTTATGCGTTTGGATGGGTTCCCATTAGCCCACAAATTGTTATA 307
|| ||||||||||||| |||||| ||||||||||||||||| ||||||||||||||||||
Sbjct 390 CTCTATTATACGAGTTATTATGCCTTTGGATGGGTTCCCATAAGCCCACAAATTGTTATA 449
Query 308 AGGA-TCAATGGTTGGCTTCCTGGCTGGAGGAGATTAGAATACAATATGTGTAACACTAA 366
||| ||||||||||||||||||| ||||||||||||||||||||||||||||| ||||
Sbjct 450 -GGAATCAATGGTTGGCTTCCTGGATGGAGGAGATTAGAATACAATATGTGTAATACTAC 508
Query 367 TTTTGGGACTGCAAATCGTGCTGCAACATCA-AATATTTTACTTATGCATGGGACTGCTG 425
||| ||| |||||||||||||||| |||||| || || |||||||||||||| ||| |||
Sbjct 509 TTTAGGGGCTGCAAATCGTGCTGCGACATCACAA-ATCTTACTTATGCATGGAACTTCTG 567
Query 426 ATGATGTTATTCCCTCTGCATTTGGATACAAATGTGCTGACTCCCTTCGAATGGCTGGAT 485
||||||||||| ||||||| |||||||||||||||||||||||| |||||| |||||||
Sbjct 568 ATGATGTTATTTCCTCTGCGTTTGGATACAAATGTGCTGACTCCTTTCGAAAAGCTGGAT 627
Query 486 TTCCAACCTTGTTCAAACAATGCGGAGGG 514
||||||| |||||||||||||||||||||
Sbjct 628 TTCCAACTTTGTTCAAACAATGCGGAGGG 656
> Ahg474396 jgi|Araly1|474396|fgenesh2_kg.1__4350__AT1G52695.1
Length=887
Score = 481 bits (260), Expect = 3e-135
Identities = 375/429 (87%), Gaps = 13/429 (3%)
Strand=Plus/Plus
Query 93 AAT-CAGGGTGCGACATGACAAAACCTTCTGAGAACATGCTAGATGATTTTGAAAATTTA 151
||| || |||||||||| |||||| |||||||||||||| ||||||||||| || ||||
Sbjct 293 AATGCATGGTGCGACATCACAAAAGTTTCTGAGAACATGCAAGATGATTTTGGAACTTTA 352
Query 152 AATTATACAAACT-CATTTATTA-CGAGCCTTTTCTCTTCTGAACCAGACCATGTTATGA 209
|||||| ||| | || ||||| | | ||||||||||||||||||| | |||| || |
Sbjct 353 AATTATGTAAA-TGAATATATTACCTA-CCTTTTCTCTTCTGAACCACAAAATGTGATAA 410
Query 210 AAGGAGTAGG-AGGAATCGGCTTGGGTGCAGCACAAGCTCTATATTATACGAGTTGTTAT 268
||||||| || ||| |||||||||||||||||||||||||| ||||||||||||||||||
Sbjct 411 AAGGAGT-GGCAGGTATCGGCTTGGGTGCAGCACAAGCTCTCTATTATACGAGTTGTTAT 469
Query 269 GCGTTTGGATGGGTTCCCATTAGCCCACAAATTGTTATAAGGATCAATGGTTGGCTTCCT 328
|| ||||||||||||||||| | |||||||||| |||| ||||||||||||||||||||
Sbjct 470 GCCTTTGGATGGGTTCCCATAAACCCACAAATTACTATAGGGATCAATGGTTGGCTTCCT 529
Query 329 GGCTGGAGGAGATTAGAATACAATATGTGTAACACTAATTTTGGGACTGCAAATCGTGCT 388
|||||||||||||| |||||||||||| ||| |||||||||||||| ||||||||||||
Sbjct 530 GGCTGGAGGAGATTGGAATACAATATGAATAATACTAATTTTGGGACCGCAAATCGTGCT 589
Query 389 GCAACATCAAATATTTTACTTATGCATGGGAC-TGCTGATGATGTTA-TTCCCTC-TGCA 445
|| ||||||| || ||| || ||||||| || | |||||||||| | ||||||| | ||
Sbjct 590 GCCGCATCAAAAATCTTAATTCTGCATGGAACGT-CTGATGATGT-AGTTCCCTCCT-CA 646
Query 446 TTTGGATACAAATGTGCTGACTCCCTTCGAATGGCTGGATTTCCAACCTTGTTCAAACAA 505
|||||||||| |||||||||||||||||| |||||||||||||||||||||||||||||
Sbjct 647 TTTGGATACAGATGTGCTGACTCCCTTCGCGTGGCTGGATTTCCAACCTTGTTCAAACAA 706
Query 506 TGCGGAGGG 514
|| ||||||
Sbjct 707 TGTGGAGGG 715
> Ahg923797 jgi|Araly1|923797|scaffold_105078.1
Length=598
Score = 470 bits (254), Expect = 5e-132
Identities = 296/316 (94%), Gaps = 3/316 (1%)
Strand=Plus/Plus
Query 200 CATGTTATGAAAGGAGTAGGAGGAATCGGCTTGGGTGCAGCACAAGCTCTATATTATACG 259
||| ||||||||||| |||||||| | || |||||||||||||||||||| |||||||||
Sbjct 238 CAT-TTATGAAAGGATTAGGAGGAGTTGGATTGGGTGCAGCACAAGCTCTCTATTATACG 296
Query 260 AGTTGTTATGCGTTTGGATGGGTTCCCATTAGCCCACAAATTGTTATAAGGATCAATGGT 319
||||||||||| |||||||||||||| || |||||||||||||||||| |||||||||||
Sbjct 297 AGTTGTTATGCTTTTGGATGGGTTCCTATAAGCCCACAAATTGTTATAGGGATCAATGGT 356
Query 320 TGGCTTCCTGGCTGGAGGAGATTAGAATACAATATGTGTAACACTAATTTTGGGACTGCA 379
|||||||||||||||||||| |||||||||||||||||||| |||||||||||||| |||
Sbjct 357 TGGCTTCCTGGCTGGAGGAGCTTAGAATACAATATGTGTAATACTAATTTTGGGACAGCA 416
Query 380 AATCGTGCTGCAACATCA-AATATTTTACTTATGCATGGGACTGCTGATGATGTTATTCC 438
|||||||||||||||||| | || |||||||||||||| ||| ||||||||||||||||
Sbjct 417 AATCGTGCTGCAACATCACGA-ATCTTACTTATGCATGGAACTTCTGATGATGTTATTCC 475
Query 439 CTCTGCATTTGGATACAAATGTGCTGACTCCCTTCGAATGGCTGGATTTCCAACCTTGTT 498
|||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||
Sbjct 476 CTCTGCATTTGGATACAAATGTGCTGACTCCCTTCGAATGTCTGGATTTCCAACCTTGTT 535
Query 499 CAAACAATGCGGAGGG 514
||||||||||||||||
Sbjct 536 CAAACAATGCGGAGGG 551
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 18696238610
Database: halleri_transcript_ahg.fa
Posted date: Sep 25, 2014 2:02 AM
Number of letters in database: 38,939,717
Number of sequences in database: 32,672
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5