BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: halleri_transcript_ahg.fa
32,672 sequences; 38,939,717 total letters
Query= AT1G52700.1
Length=902
Score E
Sequences producing significant alignments: (Bits) Value
Ahg474397 jgi|Araly1|474397|fgenesh2_kg.1__4351__AT1G52700.1 981 0.0
Ahg929378 jgi|Araly1|929378|scaffold_301835.1 806 0.0
> Ahg474397 jgi|Araly1|474397|fgenesh2_kg.1__4351__AT1G52700.1
Length=919
Score = 981 bits (531), Expect = 0.0
Identities = 602/635 (95%), Gaps = 9/635 (1%)
Strand=Plus/Plus
Query 219 TCATCTCAGCTCATGGACAGC-T---TGCATCTTCCAAATATAAAATGGATTTGTCCAAC 274
||||||||||||||||| ||| | ||||||||||||||||||||||||||||||||||
Sbjct 286 TCATCTCAGCTCATGGAAAGCTTGCATGCATCTTCCAAATATAAAATGGATTTGTCCAAC 345
Query 275 CGCTCCTTCGCGTCCTGTTACAAGTCTTGGTGGATTTACATGCACTGCTTGGTTTGACGT 334
||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||
Sbjct 346 CGCTCCTTCGCGTCCTGTTACAAGTCTTGGTGGATTTACCTGCACTGCTTGGTTTGACGT 405
Query 335 TGGGGAAATTTCTGAAGATGGTCATGATGATTTGGAAGGTTTAGATGCCTCAGCTTCACA 394
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 406 TGGGGAAATTTCTGAAGATGGTCATGATGATTTGGAAGGTTTAGATGCCTCAGCTTCACA 465
Query 395 TATTGCTAACCTTTTGTCCT-CTGAACCAGCAGATGTTAAAGTAGGCATAGGAGGTTTTA 453
||||||||| ||||||| || ||||||||||||||||| |||| ||||||||||||||||
Sbjct 466 TATTGCTAATCTTTTGT-CTGCTGAACCAGCAGATGTTCAAGTGGGCATAGGAGGTTTTA 524
Query 454 GCATGGGAGCAGCAATATCTCTCTACTCCGCGACTTGTTATGCTCTTGGACGTTATGGAA 513
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 525 GCATGGGAGCAGCAATATCTCTCTACTCCGCGACTTGTTATGCTCTTGGACGTTATGGAA 584
Query 514 CTGGCCATGCGTATCCTATAAACCTACAAGCTGTTGTAGGACTCAGCGGCTGGCTTCCTG 573
||||||||||||||||| ||||||||| |||||||||||| |||||||||||||||||||
Sbjct 585 CTGGCCATGCGTATCCTTTAAACCTACGAGCTGTTGTAGGGCTCAGCGGCTGGCTTCCTG 644
Query 574 GTTGGAAGAGCTTAA---GGAGCAAAATAGAATGTTCATTTGAGGCTGCAAGGCGTGCTG 630
||||||||||||||| ||||||||||||||||||||| ||||||||||||||||||||
Sbjct 645 GTTGGAAGAGCTTAATAAGGAGCAAAATAGAATGTTCATATGAGGCTGCAAGGCGTGCTG 704
Query 631 CATCGTTACCAATTATACTTACACATGGAACTTCCGATGATGTGGTTCCTTATAGGTTTG 690
| ||||||||||| || ||||||||||| || ||||||||||||||||||||||||||||
Sbjct 705 CGTCGTTACCAATCATCCTTACACATGGGACATCCGATGATGTGGTTCCTTATAGGTTTG 764
Query 691 GAGAGAAATCTGCGCAGTCTCTTGGCATGGCTGGATTTCGACTAGCCATGTTTAAACCAT 750
|||||||||||||||||||||||||||||||||||||||||| ||||||||| |||||||
Sbjct 765 GAGAGAAATCTGCGCAGTCTCTTGGCATGGCTGGATTTCGACAAGCCATGTTCAAACCAT 824
Query 751 ACGAAGGACTTGGTCATTATACCGTTCCCAGAGAAATGGATGAGGTCGTTCACTGGCTCA 810
|||||||||||||||| ||||| ||||||| ||||||| |||||||||||||||||||||
Sbjct 825 ACGAAGGACTTGGTCACTATACTGTTCCCAAAGAAATGAATGAGGTCGTTCACTGGCTCA 884
Query 811 CAACGATGCTCGGACTTGAGGGCTCGCGCTAAACT 845
|| ||| |||||| |||||||||||| ||||||||
Sbjct 885 CAGCGAGGCTCGGGCTTGAGGGCTCGTGCTAAACT 919
Score = 315 bits (170), Expect = 5e-85
Identities = 195/207 (94%), Gaps = 1/207 (0%)
Strand=Plus/Plus
Query 11 TTGAAAGCTCTTAAGAAGACGAATTACAAAACCTTGAGAGGATTCAATACACTTTCAACA 70
|||||||||||| ||||||| ||||||||||| || |||||||||||||||| || | |
Sbjct 2 TTGAAAGCTCTTCAGAAGACAAATTACAAAACTTTAAGAGGATTCAATACAC-TTGATCC 60
Query 71 AAAAATGAGTTACTCTCATCAAAGCATGGGTTCTGGTAGTAGAAATGCAAGGGGATATGA 130
||||||||||||||||| |||||||||||||||||| |||||||||||||||||||||||
Sbjct 61 AAAAATGAGTTACTCTCGTCAAAGCATGGGTTCTGGAAGTAGAAATGCAAGGGGATATGA 120
Query 131 ATTTGGAAGGACTTATGTTGTGAGGCCTAAAGGAAAGCATCAAGCCACTCTAGTCTGGCT 190
|||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||
Sbjct 121 ATTTGGAAGGACTTATGTTGTGAGGCCTAAGGGAAAGCATCAAGCCACTCTAGTCTGGCT 180
Query 191 TCATGGTCTTGGTGACAATGGCTCTAG 217
||||||||||||||||||||| |||||
Sbjct 181 TCATGGTCTTGGTGACAATGGGTCTAG 207
> Ahg929378 jgi|Araly1|929378|scaffold_301835.1
Length=810
Score = 806 bits (436), Expect = 0.0
Identities = 670/785 (85%), Gaps = 7/785 (1%)
Strand=Plus/Plus
Query 64 TTCAACAAAAAATGAGTTACTCTCATCAAAGCATGGGTTCTGGTAGTAGAAATGCAAGGG 123
|||||| || |||||| || ||||||||||||||||||||||||||||||| | ||||||
Sbjct 13 TTCAAC-AACAATGAGCTATTCTCATCAAAGCATGGGTTCTGGTAGTAGAAGTACAAGGG 71
Query 124 GATATGAATTTGGAAGGACTTATGTTGTGAGGCCTAAAGGAAAGCATCAAGCCACTCTAG 183
| ||||| |||||||||||||||||||||||||||||||||||||| ||||| ||| | |
Sbjct 72 GCTATGAGTTTGGAAGGACTTATGTTGTGAGGCCTAAAGGAAAGCACCAAGCTACTATTG 131
Query 184 TCTGGCTT-CATGGTCTTGGTGACAATGGCTCTAGTTCATCTCAGCTCATGGACAGCTTG 242
| ||| || ||||||||||| ||||||||||| || || ||||||||| |||| ||| |
Sbjct 132 TTTGG-TTGCATGGTCTTGGAGACAATGGCTCCAGCTCTTCTCAGCTCTTGGAGAGCCTA 190
Query 243 CATCTTCCAAATATAAAATGGATTTGTCCAACCGCTCCTTCGCGTCCTGTTACAAGTCTT 302
| ||||||||| |||||||||||||||||||| |||||||||||||||||| | |||
Sbjct 191 CCTCTTCCAAACATAAAATGGATTTGTCCAACTGCTCCTTCGCGTCCTGTTTCGCTTCTG 250
Query 303 GGTGGATTTACATGCACTGCTTGGTTTGACGTTGGG-GAAATTTCTGAAGATGGTCATGA 361
|||||||| | |||||||| ||||||||||| ||| ||||||||||| ||| ||||||
Sbjct 251 GGTGGATTCCCTTGCACTGCCTGGTTTGACGT-GGGAGAAATTTCTGAGGATCTTCATGA 309
Query 362 TGATTTGGAAGGTTTAGATGCCTCAGCTTCACATATTGCTAACCTTTTGTCCTCTGAACC 421
|||| | ||||| |||||||| |||||| |||||||||||||||| || ||| |||||||
Sbjct 310 TGATATAGAAGGCTTAGATGCTTCAGCTGCACATATTGCTAACCTCTTATCCGCTGAACC 369
Query 422 AGCAGATGTTAAAGTAGGCATAGGAGGTTTTAGCATGGGAGCAGCAATATCTCTCTACTC 481
| ||||||| ||||| || ||||||||||| || ||||| ||||||||| ||||||||||
Sbjct 370 AACAGATGTCAAAGTTGGGATAGGAGGTTTCAGTATGGGTGCAGCAATAGCTCTCTACTC 429
Query 482 CGCGACTTGTTATGCTCTTGGACGTTATGGAACTGGCCATGCGTATCCTATAAACCTACA 541
| | || || || |||||||| ||||||||||| || ||| | ||| |||| |||||||
Sbjct 430 CACAACGTGCTACGCTCTTGGGCGTTATGGAACCGGACATCCTTATACTATTAACCTACG 489
Query 542 AGCTGTTGTAGGACTCAGCGGCTGGCTTCCTGGTTGGAAGAGCTTAAGGAGCAAAATAGA 601
|||| ||||||||| || || |||||||||||||||| |||||||||||||||||||||
Sbjct 490 AGCTACTGTAGGACTTAGTGGTTGGCTTCCTGGTTGGAGGAGCTTAAGGAGCAAAATAGA 549
Query 602 ATGTTC-ATTTGAGGCTGCAAGGCGTGCTGCATCGTTACCAATTATACTTACACATGGAA 660
| |||| | | |||| ||||||||| ||||||||| ||||||| |||||| |||||||||
Sbjct 550 AAGTTCTAAT-GAGGTTGCAAGGCGCGCTGCATCGATACCAATCATACTTGCACATGGAA 608
Query 661 CTTCCGATGATGTGGTTCCTTATAGGTTTGGAGAGAAATCTGCGCAGTCTCTTGGCATGG 720
|||| ||||| || || |||||||| |||||||| |||||||| || || |||| |||||
Sbjct 609 CTTCGGATGACGTAGTACCTTATAGATTTGGAGAAAAATCTGCCCATTCACTTGCCATGG 668
Query 721 CTGGATTTCGACTAGCCATGTTTAAACCATACGAAGGACTTGGTCATTATACCGTTCCCA 780
||||||| |||| | | ||||| |||||||| ||||| |||||||| ||||| ||||| |
Sbjct 669 CTGGATTCCGACAAACTATGTTCAAACCATATGAAGGGCTTGGTCACTATACGGTTCCTA 728
Query 781 GAGAAATGGATGAGGTCGTTCACTGGCTCACAACGATGCTCGGACTTGAGGGCTCGCGCT 840
||||||||||||||| |||||||||||| | | | ||| || || ||||||||||| |
Sbjct 729 AAGAAATGGATGAGGTGGTTCACTGGCTCGCCTCAAGGCTTGGTCTCGAGGGCTCGCGTT 788
Query 841 AAACT 845
|||||
Sbjct 789 AAACT 793
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 33433798209
Database: halleri_transcript_ahg.fa
Posted date: Sep 25, 2014 2:02 AM
Number of letters in database: 38,939,717
Number of sequences in database: 32,672
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5