BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: halleri_transcript_ahg.fa
32,672 sequences; 38,939,717 total letters
Query= AT1G52710.1
Length=680
Score E
Sequences producing significant alignments: (Bits) Value
Ahg923799 jgi|Araly1|923799|scaffold_105080.1 289 2e-77
> Ahg923799 jgi|Araly1|923799|scaffold_105080.1
Length=571
Score = 289 bits (156), Expect = 2e-77
Identities = 243/282 (86%), Gaps = 18/282 (6%)
Strand=Plus/Plus
Query 139 GGAAGGAGGCTGCTTGACATCGACCACCCTGAAAGTCCTTTTGGTACAAAGGAATCTCCT 198
|||||||||||||||||||| ||| |||||||| | |||||||||||||||||||||||
Sbjct 288 GGAAGGAGGCTGCTTGACATAGACTACCCTGAAGGCCCTTTTGGTACAAAGGAATCTCCC 347
Query 199 GCTGTCGTACAGTCCTACTTTGACAAGAGAAATATCGGATGCCGTGGTGGTGAAGGCGAG 258
||||||||| ||||||||| ||||||||||| | ||||||||| ||||||||||||||||
Sbjct 348 GCTGTCGTAAAGTCCTACTATGACAAGAGAATTGTCGGATGCCCTGGTGGTGAAGGCGAG 407
Query 259 GATGGACACGACGTCGTTTGGTTCTGGCTAGATAAAGGAAAGTCATTTGAATGTCCAGTG 318
|| | |||||||||||| |||||||||||||| |||||||||||||||||||||||||||
Sbjct 408 GACGAACACGACGTCGTATGGTTCTGGCTAGAGAAAGGAAAGTCATTTGAATGTCCAGTG 467
Query 319 TGCTCCCAATACTT-----T-GA-G--------C-A--CGGACCACCAGACGGTCATGGT 360
||||| |||||||| | || | | | |||||||||||| ||||| |||
Sbjct 468 TGCTCTCAATACTTCGAGCTCGAAGTGGTTGGTCCAGGCGGACCACCAGATGGTCACGGT 527
Query 361 GACGATGAAGACCACCACCATTGATTCCGGTCTTTTCTTAAC 402
||||| |||||||||||||||| ||||| || ||||||||||
Sbjct 528 GACGACGAAGACCACCACCATTAATTCCAGTGTTTTCTTAAC 569
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 24970510635
Database: halleri_transcript_ahg.fa
Posted date: Sep 25, 2014 2:02 AM
Number of letters in database: 38,939,717
Number of sequences in database: 32,672
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5