BLASTN 2.2.26+


Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.



Database: halleri_transcript_ahg.fa
           32,672 sequences; 38,939,717 total letters



Query= AT1G52720.1

Length=767
                                                                      Score     E
Sequences producing significant alignments:                          (Bits)  Value

  Ahg923802 jgi|Araly1|923802|scaffold_105083.1                        532    1e-150


> Ahg923802 jgi|Araly1|923802|scaffold_105083.1
Length=408

 Score =  532 bits (288),  Expect = 1e-150
 Identities = 371/409 (91%), Gaps = 14/409 (3%)
 Strand=Plus/Plus

Query  87   TCTATCTACATTTTCACTTTCAATGGCTTTGATTATCACCTGCTCCGCTCTACCCACGAT  146
            ||||||||||||||||||||||||||||||||||||| |||||||||||||| |||||||
Sbjct  1    TCTATCTACATTTTCACTTTCAATGGCTTTGATTATCTCCTGCTCCGCTCTAACCACGAT  60

Query  147  CCGAGCATCTTCCGGATCCGGATCCCTTAACCCGGATCAAAACCGTAAGAAATCTGCTGC  206
            |||||||||||||||||||||||||||||| |||| ||  || || ||||||||| || |
Sbjct  61   CCGAGCATCTTCCGGATCCGGATCCCTTAAGCCGGGTCCGAATCGCAAGAAATCTTCTTC  120

Query  207  TTGGTGGGCTCCTCTCTTCGGTTTACCCTCCGAT-CCAGATTACCTCAACATCGAAAGCT  265
            |||||||||||||||||||||||||||||||||| ||| |||||||||||||||||||||
Sbjct  121  TTGGTGGGCTCCTCTCTTCGGTTTACCCTCCGATCCCA-ATTACCTCAACATCGAAAGCT  179

Query  266  CATGCTCCACCGTGAATCCGG-AT---A-------AAA-CCGATATTTCCGGGTCGGGTC  313
            || ||||| |||||||||||| ||   |       ||| |||||||||||||||||||||
Sbjct  180  CAGGCTCCGCCGTGAATCCGGAATCGAATCCGGGTAAACCCGATATTTCCGGGTCGGGTC  239

Query  314  AAAAGTTTCGTCGCGGTTGTTTTACGGAGGAGAAAGCTAAGCAGTTGAGGAGGAAAACCG  373
            | |||||||||||||||||| ||||||||||||||||||||||||||||||||||||| |
Sbjct  240  AGAAGTTTCGTCGCGGTTGTCTTACGGAGGAGAAAGCTAAGCAGTTGAGGAGGAAAACAG  299

Query  374  CAGAAGCTTCCACGTTCCATGACGTAATGTATCACTCCGCCATTGCTTCTCGACTTGCGT  433
            ||||||||||||||||||| || || |||||||| |||||||| |||||||||||||| |
Sbjct  300  CAGAAGCTTCCACGTTCCACGATGTTATGTATCATTCCGCCATAGCTTCTCGACTTGCAT  359

Query  434  CTGATATCACCGGCCGAGTCGAGGATTGAAACGGATTCGGGTCAGATCT  482
            ||||| || ||||||| ||||||||||||||||||||||||||||||||
Sbjct  360  CTGATCTCTCCGGCCGGGTCGAGGATTGAAACGGATTCGGGTCAGATCT  408



Lambda     K      H
    1.33    0.621     1.12 

Gapped
Lambda     K      H
    1.28    0.460    0.850 

Effective search space used: 28287204414


  Database: halleri_transcript_ahg.fa
    Posted date:  Sep 25, 2014  2:02 AM
  Number of letters in database: 38,939,717
  Number of sequences in database:  32,672



Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5