BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: halleri_transcript_ahg.fa
32,672 sequences; 38,939,717 total letters
Query= AT1G52730.2
Length=1379
Score E
Sequences producing significant alignments: (Bits) Value
Ahg474398 jgi|Araly1|474398|fgenesh2_kg.1__4352__AT1G52730.2 1967 0.0
Ahg479012 jgi|Araly1|479012|fgenesh2_kg.3__1713__AT3G15610.1 1157 0.0
> Ahg474398 jgi|Araly1|474398|fgenesh2_kg.1__4352__AT1G52730.2
Length=1245
Score = 1967 bits (1065), Expect = 0.0
Identities = 1173/1224 (96%), Gaps = 11/1224 (1%)
Strand=Plus/Plus
Query 1 CTTCCCGTCTAGATGTAGAAATCCCTAAAACTTGCTACTGTTTTGC-ATACGGGGCTTGT 59
||||| || | ||||||||||||||||||||||||||||| ||||| |||| ||||
Sbjct 1 CTTCCTGTGTCGATGTAGAAATCCCTAAAACTTGCTACTG-TTTGCAATAC----TTTGT 55
Query 60 ACAAATAAAAACCACCCAATTCCTACGCTTTCCTCTACAAATTGTCCCCttttttttttA 119
|||||||||||||||||||||||| |||||||||||||||||| ||| | |||||||
Sbjct 56 ACAAATAAAAACCACCCAATTCCTTCGCTTTCCTCTACAAATT-TCCAC---TTTTTTT- 110
Query 120 ACTTTTATACTTTCAATTCATCTTTGGTTCTGTAGAATTCCCAGGAATCAGCATTCCACT 179
|||||| ||||||||||||||||||||||||||||||||| |||||||||||||||||||
Sbjct 111 ACTTTTCTACTTTCAATTCATCTTTGGTTCTGTAGAATTCTCAGGAATCAGCATTCCACT 170
Query 180 GGTTTAGGATAGATGGAGAAGAAGAAGGTGACGATTCCACAAGTGTGTCATGGCCATTCA 239
||||||||||| ||||||||||||||||||||||||||||||||||||||||| ||||||
Sbjct 171 GGTTTAGGATAAATGGAGAAGAAGAAGGTGACGATTCCACAAGTGTGTCATGGACATTCA 230
Query 240 AGACCTGTTGTTGATTTGTTCTACAGTCCAATTACTCCTGACGGTTTCTTCCTCATCAGC 299
||||||||||||||||||||||||||||||||||| ||||| ||||||||||||||||||
Sbjct 231 AGACCTGTTGTTGATTTGTTCTACAGTCCAATTACGCCTGATGGTTTCTTCCTCATCAGC 290
Query 300 GCTAGCAAAGATTCGCATCCAATGTTGAGAAATGGGGAAACTGGAGACTGGATTGGTACA 359
||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||
Sbjct 291 GCTAGCAAAGATTCGCATCCAATGTTGAGAAATGGAGAAACTGGAGACTGGATTGGTACA 350
Query 360 TTTGAAGGGCATAAAGGTGCAGTTTGGAGTTCTTGTCTGGATAACAATGCATTACGTGCT 419
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 351 TTTGAAGGGCATAAAGGTGCAGTTTGGAGTTCTTGTCTGGATAACAATGCATTACGTGCT 410
Query 420 GCATCTGCTTCTGCCGATTTTTCAGCCAAACTTTGGGATGCGTTAACAGGGGATGTGCTG 479
||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 411 GCATCTGCTTCAGCCGATTTTTCAGCCAAACTTTGGGATGCGTTAACAGGGGATGTGCTG 470
Query 480 CATTCTTTTGAGCACAAGCATATTGTCCGAGCATGCGCCTTCTCAGAGGATACAAAATCG 539
|||||||||||||||||||||||||| ||||||||||||||||||||||||||||||| |
Sbjct 471 CATTCTTTTGAGCACAAGCATATTGTGCGAGCATGCGCCTTCTCAGAGGATACAAAATTG 530
Query 540 TTGCTCACAGGAGGGTTTGAGAAAATTCTTCGTGTTTTTGACATGAATCGGTTGGATGCA 599
|||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||
Sbjct 531 TTGCTCACAGGAGGGTTTGAGAAAATTCTTCGCGTTTTTGACATGAATCGGTTGGATGCA 590
Query 600 CCTCCTACAGAAGTTGATAAATCTCCTGGTTCTATCAGAACCCTCACATGGCTTCACAGT 659
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 591 CCTCCTACAGAAGTTGATAAATCTCCTGGTTCTATCAGAACCCTCACATGGCTTCACAGT 650
Query 660 GATCAAACAATATTAAGTTCATGTACTGATATTGGCGGTGTAAGGTTATGGGATGTGAGG 719
|||||||||||||||||||| || ||||||||||| ||||||||||||||||||||||||
Sbjct 651 GATCAAACAATATTAAGTTCCTGCACTGATATTGGTGGTGTAAGGTTATGGGATGTGAGG 710
Query 720 AGTGGGAAAATTGTGCAAACGTTAGAAACTAAGTCTCCTGTCACCAGTGCTGAAGTGAGC 779
|||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||
Sbjct 711 AGTGGGAAAATTGTCCAAACGTTAGAAACTAAGTCTCCTGTCACCAGTGCTGAAGTGAGC 770
Query 780 CAAGATGGACGGTATATAACAACTGCTGATGGGTCAACTGTTAAATTCTGGGACGCTAAC 839
|||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||
Sbjct 771 CAAGATGGACGGTATATAACAACTGCTGATGGGTCAACTGTTAAATTCTGGGACGCAAAC 830
Query 840 CATTTTGGACTAGTGAAGAGTTACGACATGCCCTGCAATATTGAATCTGCATCGTTGGAG 899
|| ||||||||||| ||||||||||||||||||||||||||||||||||| || ||||||
Sbjct 831 CACTTTGGACTAGTTAAGAGTTACGACATGCCCTGCAATATTGAATCTGCGTCCTTGGAG 890
Query 900 CCAAAGTCTGGTGAAAAATTTGTTGCTGGTGGAGAGGATATGTGGGTCCGAGTGTTTGAT 959
|||||||||||||| || ||||||||||||||||||||||||||||||||||| ||||||
Sbjct 891 CCAAAGTCTGGTGAGAAGTTTGTTGCTGGTGGAGAGGATATGTGGGTCCGAGTATTTGAT 950
Query 960 TTCTACACTGGCGAAGAGATTGGATGCAACAAGGGACATCACGGTCCAGTACACTGCGTT 1019
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 951 TTCTACACTGGCGAAGAGATTGGATGCAACAAGGGACATCACGGTCCAGTACACTGCGTG 1010
Query 1020 AGGTTTACTCCCACTGGTTTATCCTATGCCTCGGGATCTGAAGACGGGACAATCAGAATC 1079
|||||||| |||||||| | || |||||||||||||||||||||||||| |||||||||
Sbjct 1011 AGGTTTACCCCCACTGGCCTGTCTTATGCCTCGGGATCTGAAGACGGGACCATCAGAATC 1070
Query 1080 TGGCAAACAACACCAGCAAATCCCGAAGAGAACGAAACTAGCTCGAGGAGAGTGAAGCAT 1139
||||||||||||||||||||||||||||| |||||| | ||||| |||||||||||||||
Sbjct 1071 TGGCAAACAACACCAGCAAATCCCGAAGAAAACGAAGCAAGCTCAAGGAGAGTGAAGCAT 1130
Query 1140 AGCGTGGATGAAGTTTCAAAGAAGATTGAAGGCTTTCACATCAACAAAGAAGGAAAAACC 1199
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1131 AGCGTGGATGAAGTTTCAAAGAAGATTGAAGGCTTTCACATCAACAAAGAAGGAAAAACC 1190
Query 1200 GCAGAGAAACCATCTGATACTTAA 1223
||||||||||||||||||||||||
Sbjct 1191 GCAGAGAAACCATCTGATACTTAA 1214
> Ahg479012 jgi|Araly1|479012|fgenesh2_kg.3__1713__AT3G15610.1
Length=1371
Score = 1157 bits (626), Expect = 0.0
Identities = 910/1045 (87%), Gaps = 28/1045 (3%)
Strand=Plus/Plus
Query 190 AGATGGAGAAGAAGAAGGTGA-CGATTCCACAAGTGTGTCATGGCCATTCAAGACCTGTT 248
|||||||||||||||| || | ||| ||| | |||||| ||||||||||| |||||||||
Sbjct 252 AGATGGAGAAGAAGAAAGT-AGCGACTCCGCTAGTGTGCCATGGCCATTCGAGACCTGTT 310
Query 249 GTTGATTTGTTCTACAGTCCAATTACTCCTGACGGTTTCTTCCTCATCAGCGCTAGCAAA 308
|| |||||||||||||||||||| || ||||| |||||||||||||||||||| ||||||
Sbjct 311 GTGGATTTGTTCTACAGTCCAATCACACCTGATGGTTTCTTCCTCATCAGCGCAAGCAAA 370
Query 309 GATTCGCATCCAATGTTGAGAAATGGGGAAACTGGAGACTGGATTGGTACATTTGAAGGG 368
||||| |||||||||||||||||||||||||||||||| |||||||||||||||||||||
Sbjct 371 GATTCTCATCCAATGTTGAGAAATGGGGAAACTGGAGATTGGATTGGTACATTTGAAGGG 430
Query 369 CATAAAGGTGCAGTTTGGAGTTCTTGTCTGGATAACAATGCATTACGTGCTGCATCTGCT 428
||||||||||| || |||||||||||| |||||||||| || |||||||| || |||||
Sbjct 431 CATAAAGGTGCTGTGTGGAGTTCTTGTTTGGATAACAACGCTTTACGTGCAGCTTCTGCA 490
Query 429 TCTGCCGATTTTTCAGCCAAACTTTGGGATGCGTTAACAGGGGATGTGCTGCATTCTTTT 488
||||| ||||||||||| |||||||||||||| || || ||||||||| |||||||||||
Sbjct 491 TCTGCTGATTTTTCAGCGAAACTTTGGGATGCTTTGACCGGGGATGTGTTGCATTCTTTT 550
Query 489 GAGCACAAGCATATTGTCCGAGCATGCGCCTTCTCAGAGGATACAAAATCGT-TGCTCAC 547
||||||||||||||||| ||||||||||||||||| ||||||| |||| | | ||||
Sbjct 551 GAGCACAAGCATATTGTTCGAGCATGCGCCTTCTCTCAGGATACGAAAT-TTCTAATCAC 609
Query 548 AGGAGGGTTTGAGAAAATTCTTCGTGTTTTTGACATGAATCGGTTGGATGCACCTCCTAC 607
|||||| ||||||||||||||||||||||| ||| ||||||| |||||||||||||||||
Sbjct 610 AGGAGGATTTGAGAAAATTCTTCGTGTTTTCGACTTGAATCGCTTGGATGCACCTCCTAC 669
Query 608 AGAAGTTGATAAATCTCCTGGTTCTATCAGAACCCTCACATGGCTTCACAGTGATCAAAC 667
|||| |||||||||||||||||||||||||||| || || ||||||||| ||||||||||
Sbjct 670 AGAAATTGATAAATCTCCTGGTTCTATCAGAACACTAACTTGGCTTCACGGTGATCAAAC 729
Query 668 AATATTAAGTTCATGTACTGATATTGGCGGTGTAAGGTTATGGGATGTGAGGAGTGGGAA 727
||||||||||| || ||||||||||||||||| ||||||||||||||||||||||| ||
Sbjct 730 CATATTAAGTTCTTGCACTGATATTGGCGGTGTGAGGTTATGGGATGTGAGGAGTGGCAA 789
Query 728 AATTGTGCAAACGT-TAGAAACTAAGTCTCCTGTCACCAGTGCTGAAGTGAGCCAAGATG 786
|||||||||||| | ||||||| ||||||||||||||||||||||||||||| |||||||
Sbjct 790 AATTGTGCAAAC-TCTAGAAACCAAGTCTCCTGTCACCAGTGCTGAAGTGAGTCAAGATG 848
Query 787 GACGGTATATAACAACTGCTGATGGG-TCAACTGTTAAATTCTGGGACGCTAACCATTTT 845
|||||||||| |||||||| || ||| |||||||||||||| ||||| || || ||||||
Sbjct 849 GACGGTATATCACAACTGCCGA-GGGATCAACTGTTAAATTTTGGGATGCAAATCATTTT 907
Query 846 GGACTAGTGAAGAGTTACGACATGCCCTGCAATATTGAATCTGCATCG-TTGGAGCC-AA 903
||||||||||||||||||||||||||||||||||| |||||||| ||| ||| |||| ||
Sbjct 908 GGACTAGTGAAGAGTTACGACATGCCCTGCAATATCGAATCTGCGTCGCTTG-AGCCTAA 966
Query 904 AGTCTGGTGAAAAATTT-GTTGCTGGTGGAGAGGATATGTGGGTCCGAGTGTTTGATTTC 962
| ||||| || || || |||||||||||||| ||||||||||| ||| | |||||||||
Sbjct 967 A-TCTGGC-AACAAGTTCGTTGCTGGTGGAGAAGATATGTGGGTTCGACTCTTTGATTTC 1024
Query 963 TACACTGGCGAAGAGATTGGATGCAACAAGGGACATCACGGTCCAGTACACTGCGTTAGG 1022
|||| || || |||||||||||||||||||||||||| ||||| || ||||| || ||
Sbjct 1025 CACACGGGAGAGGAGATTGGATGCAACAAGGGACATCATGGTCCGGTTCACTGTGTGAGA 1084
Query 1023 TTTACTCCCACTGGTTTA-TCCTATGCCTC-GGGATCTGAAGACGGGACAATCAGAATCT 1080
||| | || || ||| | || ||||| || ||| |||||||| || |||||||||||||
Sbjct 1085 TTTGCACCAACAGGTG-AGTCTTATGCTTCAGGG-TCTGAAGATGGTACAATCAGAATCT 1142
Query 1081 GGCAAACAACACCAGCAAATCCCGAAGAGAAC-GAAACTAGCTCGAGGAGAGTGAAGCAT 1139
||||||| || | ||||| ||||||||| | | | || | | | ||||||
Sbjct 1143 GGCAAACTGGTCCGGTGAATCCTGAAGAGAACAGTGA--A--TCAA--A-ACCGAAGCAG 1195
Query 1140 AGCGTGGATGAAGTTTCAAAG-AAGATTGAAGGCTTTCACATCAACAAAGAAGGAAAAAC 1198
|| |||||||| ||| | | |||||||||||||||||||| ||||| ||||| |||||
Sbjct 1196 AGTGTGGATGAGGTTACTC-GTAAGATTGAAGGCTTTCACATTAACAAGGAAGGGAAAAC 1254
Query 1199 CGCAGAGAAACCATCTGATACTTAA 1223
||||||||||||||||||| |||||
Sbjct 1255 CGCAGAGAAACCATCTGATGCTTAA 1279
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 51618429618
Database: halleri_transcript_ahg.fa
Posted date: Sep 25, 2014 2:02 AM
Number of letters in database: 38,939,717
Number of sequences in database: 32,672
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5