BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: halleri_transcript_ahg.fa
32,672 sequences; 38,939,717 total letters
Query= AT1G52740.1
Length=807
Score E
Sequences producing significant alignments: (Bits) Value
Ahg474400 jgi|Araly1|474400|fgenesh2_kg.1__4354__AT1G52740.1 976 0.0
Ahg341690 jgi|Araly1|341690|fgenesh1_pg.C_scaffold_3001453 392 2e-108
> Ahg474400 jgi|Araly1|474400|fgenesh2_kg.1__4354__AT1G52740.1
Length=693
Score = 976 bits (528), Expect = 0.0
Identities = 663/722 (92%), Gaps = 33/722 (5%)
Strand=Plus/Plus
Query 40 ctcttcgagctcatcttcttctctctctttttatctt-tggttgtgcgatctcctttctc 98
|||||||||||||||||||||||||| |||||||||| |||| |||||||||||||||||
Sbjct 1 CTCTTCGAGCTCATCTTCTTCTCTCTTTTTTTATCTTCTGGTGGTGCGATCTCCTTTCTC 60
Query 99 tttcaatctcC-AAGGATTTTACTGTGAGATATTTGGCGGGAAAATGTCGGGGAAAGGTG 157
||||||||||| || |||||||| ||||||||||||||||||||||||||||||||||||
Sbjct 61 TTTCAATCTCCGAA-GATTTTACAGTGAGATATTTGGCGGGAAAATGTCGGGGAAAGGTG 119
Query 158 CTAAAGGTTTGATTATGGGGAAACCCAGCGGTAGCGACAAGGATAAGGACAAGAAGAAGC 217
|||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 120 CTAAGGGTTTGATTATGGGGAAACCCAGCGGTAGCGACAAGGATAAGGACAAGAAGAAGC 179
Query 218 CTATCACTCGTTCTTCTCGAGCTGGTCTCCAGTTCCCAGTTGGTAGGGTGCATCGTCTGT 277
||||||||||||||||||| |||||||| |||||||||||||||||||| ||||| ||||
Sbjct 180 CTATCACTCGTTCTTCTCGCGCTGGTCTTCAGTTCCCAGTTGGTAGGGTTCATCGACTGT 239
Query 278 TAAAGACAAGGTCCACTGCTCATGGAAGGGTTGGAGCAACTGCAGCTGTTTACACAGCAG 337
| |||||||||||||||||||||||||||||||||||||| |||||||||||||||||||
Sbjct 240 TGAAGACAAGGTCCACTGCTCATGGAAGGGTTGGAGCAACCGCAGCTGTTTACACAGCAG 299
Query 338 CAATATTGGAGTATCTGACTGCAGAAGTTTTGGAGTTGGCTGGTAACGCCAGCAAGGA-C 396
| |||||||||||||||||||| ||||||||||||||||||||||||||||||||||| |
Sbjct 300 CGATATTGGAGTATCTGACTGCGGAAGTTTTGGAGTTGGCTGGTAACGCCAGCAAGGATC 359
Query 397 TTGAAGGTGAAACGTATCTCGCCGAGGCATTTGCAGCTTGCGATTCGTGGAGATGAGGAG 456
| ||||||||||||||||||||||||||||||||||||||||||||| |||||||| |||
Sbjct 360 T-GAAGGTGAAACGTATCTCGCCGAGGCATTTGCAGCTTGCGATTCGCGGAGATGAAGAG 418
Query 457 CTCGATACTCTCATCAAAGGAACTATAGCTGGTGGTGGAGTCATCCCTCATATCCACAAG 516
||||||||||||||||||||||||||||||||||||||||||||||| || || ||||||
Sbjct 419 CTCGATACTCTCATCAAAGGAACTATAGCTGGTGGTGGAGTCATCCCGCACATTCACAAG 478
Query 517 A-GTCTCATCAACAAATCCGCCAAGGAATAGGACTTTTTTAGTTACCCGCTTTGTTCTGT 575
| |||||||||||||||||||||||||||||||||| ||||||||||||||||||||
Sbjct 479 TCG-CTCATCAACAAATCCGCCAAGGAATAGGACTTTT--AGTTACCCGCTTTGTTCTGT 535
Query 576 GTTGCTTTTCTGTTTTCTAAATGTTTTTAAGAGTTGTTGTTTGATAAGATGCTAGAGAAG 635
|||||||||||||||| |||| || | | | ||||||||||| |
Sbjct 536 GTTGCTTTTCTGTTTT------GTTT----GA-T---------A-A-GATGCTAGAGA-G 572
Query 636 CTCTTTTTAGGATCGTTTGCTATTGTTCGTTCGATCAGCGTACTTTGTGTTAGAGACGCC 695
||||| | ||||| ||||||||||||||| |||||| |||||||||||||||||||||
Sbjct 573 CTCTTGT-AGGATTGTTTGCTATTGTTCGATCGATCGGCGTACTTTGTGTTAGAGACGTG 631
Query 696 AGTCGATTTATCTATCTTTAAAAATGTATTCGAATGATTATCCAAAAACCATTTCTGACT 755
|||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||
Sbjct 632 AGTCGATTTATCTATCTTTATGAATGTATTCGAATGATTATCCAAAAACCATTTCTGACT 691
Query 756 AC 757
||
Sbjct 692 AC 693
> Ahg341690 jgi|Araly1|341690|fgenesh1_pg.C_scaffold_3001453
Length=405
Score = 392 bits (212), Expect = 2e-108
Identities = 343/407 (84%), Gaps = 6/407 (1%)
Strand=Plus/Plus
Query 142 ATGTCGGGGAAAGGTGCTAAAGGTTTGATTATGGGGAAACCCAGCGGTAGCGACAAGGAT 201
||||| || ||||| || ||||| |||| ||||||||||||| | | | ||||||||
Sbjct 1 ATGTCTGGAAAAGGAGCGAAAGGACTGATAATGGGGAAACCCAACAGCAAAGACAAGGAC 60
Query 202 AAGGACAAGAAGAAGCCTATCACTCGTTCTTCTCGAGCTGGTCTCCAGTTCCCAGTTGGT 261
|||||||||||||| || | |||||| |||||||| |||||||||||||| ||||| ||
Sbjct 61 AAGGACAAGAAGAAACCAACCACTCGCTCTTCTCGTGCTGGTCTCCAGTTTCCAGTGGGA 120
Query 262 AGGGTGCATCGTCTGTT-AAAGACAAGGTCCACTGCTCATGGAAGGGTTGGAGCAACTGC 320
|| | ||| | ||||| |||| ||||| |||||||||||| | ||||||||||||||
Sbjct 121 AGAATCCATAGACTGTTGAAAG-GTAGGTCAACTGCTCATGGACGTGTTGGAGCAACTGC 179
Query 321 AGCTGTTTACACAGCAGCAATATTGGAGTATCTGACTGCAGAAGTTTTGGAGTTGGCTGG 380
|| |||||||| || || |||||||||||||||||||||||||| |||||| |||||||
Sbjct 180 TGCGGTTTACACTGCTGCTATATTGGAGTATCTGACTGCAGAAGTCTTGGAGCTGGCTGG 239
Query 381 TAACGCCAGCAAGGACT-TGAAGGTGAAACGTATCT-CGCCGAGGCATTTGCAGCTTGCG 438
||| || |||||||| | |||| ||||| ||||| | | || ||||| |||||||| ||
Sbjct 240 TAATGCGAGCAAGGA-TCTGAAAGTGAAGCGTAT-TACACCAAGGCACTTGCAGCTCGCT 297
Query 439 ATTCGTGGAGATGAGGAGCTCGATACTCTCATCAAAGGAACTATAGCTGGTGGTGGAGTC 498
|||||||| || |||||||||||||||||||||||||||||||| |||||||||||||||
Sbjct 298 ATTCGTGGTGACGAGGAGCTCGATACTCTCATCAAAGGAACTATTGCTGGTGGTGGAGTC 357
Query 499 ATCCCTCATATCCACAAGAGTCTCATCAACAAATCCGCCAAGGAATA 545
|| ||||| || |||||| ||||||||||||||| | ||| |||||
Sbjct 358 ATTCCTCACATTCACAAGTCTCTCATCAACAAATCTGGCAAAGAATA 404
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 29812121094
Database: halleri_transcript_ahg.fa
Posted date: Sep 25, 2014 2:02 AM
Number of letters in database: 38,939,717
Number of sequences in database: 32,672
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5