BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: halleri_transcript_ahg.fa
32,672 sequences; 38,939,717 total letters
Query= AT1G52750.1
Length=2275
Score E
Sequences producing significant alignments: (Bits) Value
Ahg314605 jgi|Araly1|314605|fgenesh1_pm.C_scaffold_1003385 2843 0.0
> Ahg314605 jgi|Araly1|314605|fgenesh1_pm.C_scaffold_1003385
Length=1902
Score = 2843 bits (1539), Expect = 0.0
Identities = 1789/1910 (94%), Gaps = 16/1910 (1%)
Strand=Plus/Plus
Query 54 ATGGCGGCGTGGAAGTCATGGATTGTGGCGGAGAAAGCACGAAGATGTTTAAGGACGATG 113
|||||||| |||||||| ||||||||||||||||||||||||||||| || |||| |||
Sbjct 1 ATGGCGGCATGGAAGTCGTGGATTGTGGCGGAGAAAGCACGAAGATGCTTCCGGACCATG 60
Query 114 TTCTTTGTGGCAGCAATGACGGCGTCTCTGTTAGCTTCTTCATTACCGGTTCTGATCACG 173
||||||||||||||||||| ||| |||||||||||||| || ||||||||||||||||||
Sbjct 61 TTCTTTGTGGCAGCAATGATGGCCTCTCTGTTAGCTTCCTCGTTACCGGTTCTGATCACG 120
Query 174 GTGGCTGATGTGGTAGTTCCTTGTCTTATCGTCTCTAGCATCACGTGCCTCACGTGTC-A 232
|||||||||||||| |||||||||||||||||||| |||||||||||||||||||| | |
Sbjct 121 GTGGCTGATGTGGTGGTTCCTTGTCTTATCGTCTCCAGCATCACGTGCCTCACGTG-CTA 179
Query 233 CTCCCCTGCACAACATTTTCGTCAGTATAGTTTCAAGACCTCTCTCATTGATGTACCACT 292
||||||||||||||||||||||||||| |||||||||| |||||||||||||||||||||
Sbjct 180 CTCCCCTGCACAACATTTTCGTCAGTACAGTTTCAAGAGCTCTCTCATTGATGTACCACT 239
Query 293 CGTCTCGCTCATTAGATCTCTCGTCATTATCTGTCTCTCTTGGTTATGTGAAGACACAAG 352
|||||| ||| ||||||||||| ||||||||||||| |||||| | ||||||||||||||
Sbjct 240 CGTCTCCCTCCTTAGATCTCTCTTCATTATCTGTCTTTCTTGGATCTGTGAAGACACAAG 299
Query 353 ATTAGCTTATGGTCTGTATCTTGAAACAGTAATGTTATCTTCCTTTGGAGGGATTCTTCT 412
||||||||||||||| ||| |||||||||| ||||||| ||||||||||||||| |||||
Sbjct 300 ATTAGCTTATGGTCTTTATTTTGAAACAGTGATGTTATTTTCCTTTGGAGGGATACTTCT 359
Query 413 TCTTTTGGTTAAAACTTGTGTTTTCACTGTGAATTCTAC-TCTTGAGGAGGCTAAGGTCT 471
||||||||||||||||||||||||||||||||||||| | ||||||||||||||||||||
Sbjct 360 TCTTTTGGTTAAAACTTGTGTTTTCACTGTGAATTCT-CATCTTGAGGAGGCTAAGGTCT 418
Query 472 ATCACCTCAAGATCTCATGGGGAATGCCGGTTTTGTTACTATCTTCTGCGGTTTTCGGTC 531
|| || |||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 419 ATTACTTCAAGATCTCATGGGGAATGCCGGTTTTGTTACTATCTTCTGCGGTTTTCGGTA 478
Query 532 TAGCTCATGTCGTGGTAGCTTATCGAAAAAGCTGTGGAGCAAGAAGGAAGCTAATGTACC 591
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 479 TAGCTCATGTCGTGGTAGCTTATCGAAAAAGCTGTGGAGCAAGAAGGAAGCTAATGTACC 538
Query 592 ACAAGATTGACCAAGAAGCTGTTCTCTCATGTAAATCGGGTTTTTCTGGTTACAAGAAGG 651
||||||||||||||||||||||||||||||| ||||| ||||| || |||||||||||||
Sbjct 539 ACAAGATTGACCAAGAAGCTGTTCTCTCATGCAAATCCGGTTTCTCAGGTTACAAGAAGG 598
Query 652 CTCATCGTCAATCTTTCACTCGATCAAACTGCAAAATATTAACTTTTGCCGGTGAATTTA 711
|||| |||||||||||||||||||||||||||||||| | |||| |||||||||||| |
Sbjct 599 CTCACCGTCAATCTTTCACTCGATCAAACTGCAAAATCCTGACTTATGCCGGTGAATTCA 658
Query 712 GACAAAAATCTTTCAGGGGAACATCTTTGGATAGAGAAGAGCTGCTACAACCAAGACTAC 771
||||||||||||||||||||||||||||||||||||||||| | ||||||||||||||||
Sbjct 659 GACAAAAATCTTTCAGGGGAACATCTTTGGATAGAGAAGAGTTACTACAACCAAGACTAC 718
Query 772 TTGCAAATGCAGACAGTTTATTCATCAAGATTCAAGGCTTATATGTCCATTACAAGCAGC 831
||||||||||||||||||||||||||| ||| |||||||||||||||||||||||||||
Sbjct 719 TTGCAAATGCAGACAGTTTATTCATCATGATCCAAGGCTTATATGTCCATTACAAGCAGT 778
Query 832 GTACCTCACCGTCTGTATCTTCCTTCGTTATTATAAGCGATTCTGCAGCGGAGATGAATG 891
|||||||||||||||||||||||||||||||| ||||||||||||||||||| |||||||
Sbjct 779 GTACCTCACCGTCTGTATCTTCCTTCGTTATTGTAAGCGATTCTGCAGCGGATATGAATG 838
Query 892 CGAGAAGATCAAGACTATTAGACAAGCAGATGTCAAACTTAACCTCCCAAACTCAGAACA 951
|||||||||||||||| ||||||||||| ||||||||||||| |||||||||||| | ||
Sbjct 839 CGAGAAGATCAAGACTGTTAGACAAGCAAATGTCAAACTTAATCTCCCAAACTCACAGCA 898
Query 952 GTCATTTTCATCGAAGCTACACTATTCAGCCCGATAGATCATCGTTATATGATCCTCTCT 1011
||||| | ||||| |||||||||||||||||||||||||||||| ||||||||||| | |
Sbjct 899 GTCATCTCCATCGTAGCTACACTATTCAGCCCGATAGATCATCGCTATATGATCCTTTGT 958
Query 1012 TAGCTAGTCAC-AACACTACACCCATTAGCTTGTTTGATAAGGATGGTGTGAATCAAATA 1070
|||| ||| || || ||||||||||| |||||||| ||||||||| ||||||||| |||
Sbjct 959 TAGCCAGTTACCAA-ACTACACCCATGAGCTTGTTCAATAAGGATGATGTGAATCACATA 1017
Query 1071 AATTCTATCAAACTCGGG-GACGATATGGA-AAAGGATGAGAATACTGGTATAGTTCTAG 1128
|||||||| || | | || || ||| || | |||| ||| ||||||| ||||||||||||
Sbjct 1018 AATTCTATGAATC-CTGGTGATGATTTGCAGAAAG-ATGGGAATACTAGTATAGTTCTAG 1075
Query 1129 TCCATGGATTTGGAGGAGGAGTTTTCTCATGGAGGCATGTAATGGGAGAGTTGTCTCTTC 1188
| ||||||||||| |||||||| |||||||||||||||||||||||||| ||||||||||
Sbjct 1076 TTCATGGATTTGGTGGAGGAGTCTTCTCATGGAGGCATGTAATGGGAGAATTGTCTCTTC 1135
Query 1189 AGCTCGGTTGCAGAGTCGTTGCTTATGACCGGCCTGGTTGGGGATTAACCTCTAGACTTA 1248
|||||||||||||||||||||| |||||||||||||||||||||||||||||||| ||||
Sbjct 1136 AGCTCGGTTGCAGAGTCGTTGCATATGACCGGCCTGGTTGGGGATTAACCTCTAGGCTTA 1195
Query 1249 TCCGGAAAGATTGGGAGAAGAGAAATCTAGCTAACCCTTACAAGCTTGAAAGCCAAGTTG 1308
|| |||||||||||||||||||||||||||||||||||||||||||||||||||| ||||
Sbjct 1196 TCAGGAAAGATTGGGAGAAGAGAAATCTAGCTAACCCTTACAAGCTTGAAAGCCAGGTTG 1255
Query 1309 ATCTACTACTTTCATTTTGTTCTGAGATGGGGTTTTCTTCGGTGATACTCGTTGGCCATG 1368
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
Sbjct 1256 ATCTACTACTTTCATTTTGTTCTGAGATGGGGTTTTCTTCGGTGATACTCGTTGGCCACG 1315
Query 1369 ACGATGGTGGTTTACTTGCTCTCAAGGCCG-CTGAAAGAATGCAAGCATCTACCTCGAAA 1427
||||||||||||| |||||||||||||||| | |||||||| |||||||||||||| |||
Sbjct 1316 ACGATGGTGGTTTGCTTGCTCTCAAGGCCGTC-GAAAGAATACAAGCATCTACCTCTAAA 1374
Query 1428 CACAATATCACAATCAAAGGGGTGGTTTTGATAAACGTTAGCTTATCAAGAGAAGTAGTT 1487
|||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||
Sbjct 1375 TACAATATCACAATCAAAGGGGTGGTTTTGATAAACGTTAGCTTATCTAGAGAAGTAGTT 1434
Query 1488 CCTGCCTTTGCAAGGATACTACTTCATACTTCACTTAGGAAGAAGCACTTGGTCCGTCCT 1547
|||||||||||||||||||| ||||||||| |||| ||||||||||||||||||||||||
Sbjct 1435 CCTGCCTTTGCAAGGATACTTCTTCATACTACACTCAGGAAGAAGCACTTGGTCCGTCCT 1494
Query 1548 TTATTGCGAACCGAGATTACCCAATTGGTGAACCGGCGTGCATGGTGTGACACCACCAAG 1607
||| ||||||||||||| ||||||||||||||||||||||||||||||||||||||||||
Sbjct 1495 TTACTGCGAACCGAGATAACCCAATTGGTGAACCGGCGTGCATGGTGTGACACCACCAAG 1554
Query 1608 CTAACTACTGATATCACAATGCTGTACAAGGCTCCTCTGTGTTTAGAAGCTTGGGATGAA 1667
||||| |||||| |||| ||||| || |||||||||||||||||||||||||||||||||
Sbjct 1555 CTAACCACTGATGTCACTATGCTCTATAAGGCTCCTCTGTGTTTAGAAGCTTGGGATGAA 1614
Query 1668 GCACTCAATGAGATAAGCAAGTTATCATATGAGATGATACTTTCACCTCAAAACGCATCA 1727
||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||
Sbjct 1615 GCACTCAATGAGATAAGCAAGTTATCATATGAGATGATACTTTCACCTCAAAATGCATCA 1674
Query 1728 GCTCTTGT-AAAATCCATAGGAGATCTTCCAGTTTTAGTTGTTGCCGGAGCTGAAGATGC 1786
||||| || |||||| |||||||||||||| ||||||||||||||||||||||| |||||
Sbjct 1675 GCTCT-GTTAAAATCAATAGGAGATCTTCCTGTTTTAGTTGTTGCCGGAGCTGAGGATGC 1733
Query 1787 TCTTGTTCCTTTGAAATCTTCACAAGTTCTGGCTTCAAAACTCACTAATTCTAGACT-AG 1845
||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
Sbjct 1734 TCTTGTTCCTTTGAAATCTTCACAAGTTCTGGCTTCAAAACTCACTAATTCTAGACTCA- 1792
Query 1846 TAGAGATCTCTGGTTGCGGCCATCTGCCACACGAGGAGTGTCCTACAACACTTGTTTCCG 1905
|||||||| |||||||||||||||||||||| ||||||||||||||||||||||||||||
Sbjct 1793 TAGAGATCGCTGGTTGCGGCCATCTGCCACATGAGGAGTGTCCTACAACACTTGTTTCCG 1852
Query 1906 CTCTCGGCTCCTTCATTTGCAGACTGATACCTAAACTACCAAACTCCTAA 1955
||||||| ||||||||||||||||||||||| ||||||| | ||||||||
Sbjct 1853 CTCTCGGTTCCTTCATTTGCAGACTGATACCAAAACTACTAGACTCCTAA 1902
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 85664961005
Database: halleri_transcript_ahg.fa
Posted date: Sep 25, 2014 2:02 AM
Number of letters in database: 38,939,717
Number of sequences in database: 32,672
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5