BLASTN 2.2.26+ Reference: Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000), "A greedy algorithm for aligning DNA sequences", J Comput Biol 2000; 7(1-2):203-14. Database: halleri_transcript_ahg.fa 32,672 sequences; 38,939,717 total letters Query= AT1G52750.1 Length=2275 Score E Sequences producing significant alignments: (Bits) Value Ahg314605 jgi|Araly1|314605|fgenesh1_pm.C_scaffold_1003385 2843 0.0 > Ahg314605 jgi|Araly1|314605|fgenesh1_pm.C_scaffold_1003385 Length=1902 Score = 2843 bits (1539), Expect = 0.0 Identities = 1789/1910 (94%), Gaps = 16/1910 (1%) Strand=Plus/Plus Query 54 ATGGCGGCGTGGAAGTCATGGATTGTGGCGGAGAAAGCACGAAGATGTTTAAGGACGATG 113 |||||||| |||||||| ||||||||||||||||||||||||||||| || |||| ||| Sbjct 1 ATGGCGGCATGGAAGTCGTGGATTGTGGCGGAGAAAGCACGAAGATGCTTCCGGACCATG 60 Query 114 TTCTTTGTGGCAGCAATGACGGCGTCTCTGTTAGCTTCTTCATTACCGGTTCTGATCACG 173 ||||||||||||||||||| ||| |||||||||||||| || |||||||||||||||||| Sbjct 61 TTCTTTGTGGCAGCAATGATGGCCTCTCTGTTAGCTTCCTCGTTACCGGTTCTGATCACG 120 Query 174 GTGGCTGATGTGGTAGTTCCTTGTCTTATCGTCTCTAGCATCACGTGCCTCACGTGTC-A 232 |||||||||||||| |||||||||||||||||||| |||||||||||||||||||| | | Sbjct 121 GTGGCTGATGTGGTGGTTCCTTGTCTTATCGTCTCCAGCATCACGTGCCTCACGTG-CTA 179 Query 233 CTCCCCTGCACAACATTTTCGTCAGTATAGTTTCAAGACCTCTCTCATTGATGTACCACT 292 ||||||||||||||||||||||||||| |||||||||| ||||||||||||||||||||| Sbjct 180 CTCCCCTGCACAACATTTTCGTCAGTACAGTTTCAAGAGCTCTCTCATTGATGTACCACT 239 Query 293 CGTCTCGCTCATTAGATCTCTCGTCATTATCTGTCTCTCTTGGTTATGTGAAGACACAAG 352 |||||| ||| ||||||||||| ||||||||||||| |||||| | |||||||||||||| Sbjct 240 CGTCTCCCTCCTTAGATCTCTCTTCATTATCTGTCTTTCTTGGATCTGTGAAGACACAAG 299 Query 353 ATTAGCTTATGGTCTGTATCTTGAAACAGTAATGTTATCTTCCTTTGGAGGGATTCTTCT 412 ||||||||||||||| ||| |||||||||| ||||||| ||||||||||||||| ||||| Sbjct 300 ATTAGCTTATGGTCTTTATTTTGAAACAGTGATGTTATTTTCCTTTGGAGGGATACTTCT 359 Query 413 TCTTTTGGTTAAAACTTGTGTTTTCACTGTGAATTCTAC-TCTTGAGGAGGCTAAGGTCT 471 ||||||||||||||||||||||||||||||||||||| | |||||||||||||||||||| Sbjct 360 TCTTTTGGTTAAAACTTGTGTTTTCACTGTGAATTCT-CATCTTGAGGAGGCTAAGGTCT 418 Query 472 ATCACCTCAAGATCTCATGGGGAATGCCGGTTTTGTTACTATCTTCTGCGGTTTTCGGTC 531 || || ||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct 419 ATTACTTCAAGATCTCATGGGGAATGCCGGTTTTGTTACTATCTTCTGCGGTTTTCGGTA 478 Query 532 TAGCTCATGTCGTGGTAGCTTATCGAAAAAGCTGTGGAGCAAGAAGGAAGCTAATGTACC 591 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct 479 TAGCTCATGTCGTGGTAGCTTATCGAAAAAGCTGTGGAGCAAGAAGGAAGCTAATGTACC 538 Query 592 ACAAGATTGACCAAGAAGCTGTTCTCTCATGTAAATCGGGTTTTTCTGGTTACAAGAAGG 651 ||||||||||||||||||||||||||||||| ||||| ||||| || ||||||||||||| Sbjct 539 ACAAGATTGACCAAGAAGCTGTTCTCTCATGCAAATCCGGTTTCTCAGGTTACAAGAAGG 598 Query 652 CTCATCGTCAATCTTTCACTCGATCAAACTGCAAAATATTAACTTTTGCCGGTGAATTTA 711 |||| |||||||||||||||||||||||||||||||| | |||| |||||||||||| | Sbjct 599 CTCACCGTCAATCTTTCACTCGATCAAACTGCAAAATCCTGACTTATGCCGGTGAATTCA 658 Query 712 GACAAAAATCTTTCAGGGGAACATCTTTGGATAGAGAAGAGCTGCTACAACCAAGACTAC 771 ||||||||||||||||||||||||||||||||||||||||| | |||||||||||||||| Sbjct 659 GACAAAAATCTTTCAGGGGAACATCTTTGGATAGAGAAGAGTTACTACAACCAAGACTAC 718 Query 772 TTGCAAATGCAGACAGTTTATTCATCAAGATTCAAGGCTTATATGTCCATTACAAGCAGC 831 ||||||||||||||||||||||||||| ||| ||||||||||||||||||||||||||| Sbjct 719 TTGCAAATGCAGACAGTTTATTCATCATGATCCAAGGCTTATATGTCCATTACAAGCAGT 778 Query 832 GTACCTCACCGTCTGTATCTTCCTTCGTTATTATAAGCGATTCTGCAGCGGAGATGAATG 891 |||||||||||||||||||||||||||||||| ||||||||||||||||||| ||||||| Sbjct 779 GTACCTCACCGTCTGTATCTTCCTTCGTTATTGTAAGCGATTCTGCAGCGGATATGAATG 838 Query 892 CGAGAAGATCAAGACTATTAGACAAGCAGATGTCAAACTTAACCTCCCAAACTCAGAACA 951 |||||||||||||||| ||||||||||| ||||||||||||| |||||||||||| | || Sbjct 839 CGAGAAGATCAAGACTGTTAGACAAGCAAATGTCAAACTTAATCTCCCAAACTCACAGCA 898 Query 952 GTCATTTTCATCGAAGCTACACTATTCAGCCCGATAGATCATCGTTATATGATCCTCTCT 1011 ||||| | ||||| |||||||||||||||||||||||||||||| ||||||||||| | | Sbjct 899 GTCATCTCCATCGTAGCTACACTATTCAGCCCGATAGATCATCGCTATATGATCCTTTGT 958 Query 1012 TAGCTAGTCAC-AACACTACACCCATTAGCTTGTTTGATAAGGATGGTGTGAATCAAATA 1070 |||| ||| || || ||||||||||| |||||||| ||||||||| ||||||||| ||| Sbjct 959 TAGCCAGTTACCAA-ACTACACCCATGAGCTTGTTCAATAAGGATGATGTGAATCACATA 1017 Query 1071 AATTCTATCAAACTCGGG-GACGATATGGA-AAAGGATGAGAATACTGGTATAGTTCTAG 1128 |||||||| || | | || || ||| || | |||| ||| ||||||| |||||||||||| Sbjct 1018 AATTCTATGAATC-CTGGTGATGATTTGCAGAAAG-ATGGGAATACTAGTATAGTTCTAG 1075 Query 1129 TCCATGGATTTGGAGGAGGAGTTTTCTCATGGAGGCATGTAATGGGAGAGTTGTCTCTTC 1188 | ||||||||||| |||||||| |||||||||||||||||||||||||| |||||||||| Sbjct 1076 TTCATGGATTTGGTGGAGGAGTCTTCTCATGGAGGCATGTAATGGGAGAATTGTCTCTTC 1135 Query 1189 AGCTCGGTTGCAGAGTCGTTGCTTATGACCGGCCTGGTTGGGGATTAACCTCTAGACTTA 1248 |||||||||||||||||||||| |||||||||||||||||||||||||||||||| |||| Sbjct 1136 AGCTCGGTTGCAGAGTCGTTGCATATGACCGGCCTGGTTGGGGATTAACCTCTAGGCTTA 1195 Query 1249 TCCGGAAAGATTGGGAGAAGAGAAATCTAGCTAACCCTTACAAGCTTGAAAGCCAAGTTG 1308 || |||||||||||||||||||||||||||||||||||||||||||||||||||| |||| Sbjct 1196 TCAGGAAAGATTGGGAGAAGAGAAATCTAGCTAACCCTTACAAGCTTGAAAGCCAGGTTG 1255 Query 1309 ATCTACTACTTTCATTTTGTTCTGAGATGGGGTTTTCTTCGGTGATACTCGTTGGCCATG 1368 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||| | Sbjct 1256 ATCTACTACTTTCATTTTGTTCTGAGATGGGGTTTTCTTCGGTGATACTCGTTGGCCACG 1315 Query 1369 ACGATGGTGGTTTACTTGCTCTCAAGGCCG-CTGAAAGAATGCAAGCATCTACCTCGAAA 1427 ||||||||||||| |||||||||||||||| | |||||||| |||||||||||||| ||| Sbjct 1316 ACGATGGTGGTTTGCTTGCTCTCAAGGCCGTC-GAAAGAATACAAGCATCTACCTCTAAA 1374 Query 1428 CACAATATCACAATCAAAGGGGTGGTTTTGATAAACGTTAGCTTATCAAGAGAAGTAGTT 1487 |||||||||||||||||||||||||||||||||||||||||||||| |||||||||||| Sbjct 1375 TACAATATCACAATCAAAGGGGTGGTTTTGATAAACGTTAGCTTATCTAGAGAAGTAGTT 1434 Query 1488 CCTGCCTTTGCAAGGATACTACTTCATACTTCACTTAGGAAGAAGCACTTGGTCCGTCCT 1547 |||||||||||||||||||| ||||||||| |||| |||||||||||||||||||||||| Sbjct 1435 CCTGCCTTTGCAAGGATACTTCTTCATACTACACTCAGGAAGAAGCACTTGGTCCGTCCT 1494 Query 1548 TTATTGCGAACCGAGATTACCCAATTGGTGAACCGGCGTGCATGGTGTGACACCACCAAG 1607 ||| ||||||||||||| |||||||||||||||||||||||||||||||||||||||||| Sbjct 1495 TTACTGCGAACCGAGATAACCCAATTGGTGAACCGGCGTGCATGGTGTGACACCACCAAG 1554 Query 1608 CTAACTACTGATATCACAATGCTGTACAAGGCTCCTCTGTGTTTAGAAGCTTGGGATGAA 1667 ||||| |||||| |||| ||||| || ||||||||||||||||||||||||||||||||| Sbjct 1555 CTAACCACTGATGTCACTATGCTCTATAAGGCTCCTCTGTGTTTAGAAGCTTGGGATGAA 1614 Query 1668 GCACTCAATGAGATAAGCAAGTTATCATATGAGATGATACTTTCACCTCAAAACGCATCA 1727 ||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||| Sbjct 1615 GCACTCAATGAGATAAGCAAGTTATCATATGAGATGATACTTTCACCTCAAAATGCATCA 1674 Query 1728 GCTCTTGT-AAAATCCATAGGAGATCTTCCAGTTTTAGTTGTTGCCGGAGCTGAAGATGC 1786 ||||| || |||||| |||||||||||||| ||||||||||||||||||||||| ||||| Sbjct 1675 GCTCT-GTTAAAATCAATAGGAGATCTTCCTGTTTTAGTTGTTGCCGGAGCTGAGGATGC 1733 Query 1787 TCTTGTTCCTTTGAAATCTTCACAAGTTCTGGCTTCAAAACTCACTAATTCTAGACT-AG 1845 ||||||||||||||||||||||||||||||||||||||||||||||||||||||||| | Sbjct 1734 TCTTGTTCCTTTGAAATCTTCACAAGTTCTGGCTTCAAAACTCACTAATTCTAGACTCA- 1792 Query 1846 TAGAGATCTCTGGTTGCGGCCATCTGCCACACGAGGAGTGTCCTACAACACTTGTTTCCG 1905 |||||||| |||||||||||||||||||||| |||||||||||||||||||||||||||| Sbjct 1793 TAGAGATCGCTGGTTGCGGCCATCTGCCACATGAGGAGTGTCCTACAACACTTGTTTCCG 1852 Query 1906 CTCTCGGCTCCTTCATTTGCAGACTGATACCTAAACTACCAAACTCCTAA 1955 ||||||| ||||||||||||||||||||||| ||||||| | |||||||| Sbjct 1853 CTCTCGGTTCCTTCATTTGCAGACTGATACCAAAACTACTAGACTCCTAA 1902 Lambda K H 1.33 0.621 1.12 Gapped Lambda K H 1.28 0.460 0.850 Effective search space used: 85664961005 Database: halleri_transcript_ahg.fa Posted date: Sep 25, 2014 2:02 AM Number of letters in database: 38,939,717 Number of sequences in database: 32,672 Matrix: blastn matrix 1 -2 Gap Penalties: Existence: 0, Extension: 2.5