BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: halleri_transcript_ahg.fa
32,672 sequences; 38,939,717 total letters
Query= AT1G52760.1
Length=1219
Score E
Sequences producing significant alignments: (Bits) Value
Ahg474402 jgi|Araly1|474402|fgenesh2_kg.1__4356__AT1G52760.1 1781 0.0
> Ahg474402 jgi|Araly1|474402|fgenesh2_kg.1__4356__AT1G52760.1
Length=1188
Score = 1781 bits (964), Expect = 0.0
Identities = 1124/1199 (94%), Gaps = 19/1199 (2%)
Strand=Plus/Plus
Query 12 CCAAAAACCAAAATTCACTG---C---C-aaaaaaaaCACATCAAAACGATGCCGTCGGA 64
||||||||||||| |||||| | | |||||||| ||||||||||||||||||||||
Sbjct 1 CCAAAAACCAAAACTCACTGAAACAAACAAAAAAAAAAACATCAAAACGATGCCGTCGGA 60
Query 65 AGCGGAGAGCTCAGCGAATTCAGCTCCGGCAACTCCGCCACCACCACCGAATTTCTGGGG 124
|||||| ||||||||||||||| | | | || ||||||||| |||||||||||||
Sbjct 61 AGCGGAAAGCTCAGCGAATTCA----C--C-A--CCACCACCACCAGCGAATTTCTGGGG 111
Query 125 AACCATGCCGGAGGAAGAGTACTACACTTCACAAGGAGTACGTAACAGCAAATCATACTT 184
|| |||||| ||||||||||||||||||||||||||||||||||||| ||||||||||||
Sbjct 112 AAACATGCCAGAGGAAGAGTACTACACTTCACAAGGAGTACGTAACACCAAATCATACTT 171
Query 185 CGAAACACCAAACGGCAAGCTCTTCACTCAGAGCTTCTTACCATTAGATGGTGAAATCAA 244
|||||||||||||||||||||||||||||| ||||| |||||||||||||||||||||||
Sbjct 172 CGAAACACCAAACGGCAAGCTCTTCACTCAAAGCTTTTTACCATTAGATGGTGAAATCAA 231
Query 245 AGGCACTGTGTACATGTCTCATGGATACGGATCCGATACAAGCTGGATGTTTCAGAAGAT 304
||||||||||||||||||||| || |||||||||||||||||||||||||||||||||||
Sbjct 232 AGGCACTGTGTACATGTCTCACGGCTACGGATCCGATACAAGCTGGATGTTTCAGAAGAT 291
Query 305 CTGTATGAGTTTCTCTAGTTGGGGTTACGCTGTTTTCGCCGCCGATCTTCTCGGTCACGG 364
||| ||||||||||||| ||||||||||||||||||||||||||||||||||||||||||
Sbjct 292 CTGCATGAGTTTCTCTACTTGGGGTTACGCTGTTTTCGCCGCCGATCTTCTCGGTCACGG 351
Query 365 CCGTTCCGATGGTATCCGCTGCTACATGGGTGATATGGAGAAAGTTGCAGCAACATCATT 424
|||||| || || |||||||||||||||||||||||||||||||||||||||||||| ||
Sbjct 352 CCGTTCTGACGGAATCCGCTGCTACATGGGTGATATGGAGAAAGTTGCAGCAACATCGTT 411
Query 425 GGCTTTCTTCAAGCATGTTCGTTGTAGTGATCCATATAAGGATCTTCCGGCTTTTCTGTT 484
||||||||| |||||||||||||||||||| || ||||||||||||||||||||||| ||
Sbjct 412 GGCTTTCTTTAAGCATGTTCGTTGTAGTGAACCGTATAAGGATCTTCCGGCTTTTCTCTT 471
Query 485 TGGTGAATCGATGGGAGGTCTTGTGACGCTTTTGATGTATTTTCAATCGGAACCTGAGAC 544
|||||| || |||||||||||||||||||||||||||||||||||||||||| |||| ||
Sbjct 472 TGGTGAGTCCATGGGAGGTCTTGTGACGCTTTTGATGTATTTTCAATCGGAAGCTGATAC 531
Query 545 TTGGACCGGTTTGATGTTTTCGGCTCCTCTCTTTGTTATCCCTGAGGATATGAAACCAAG 604
|||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||
Sbjct 532 TTGGACCGGTTTGATGTTTTCGGCTCCTCTCTTTGTTATCCCGGAGGATATGAAACCAAG 591
Query 605 CAAGGCTCATCTTTTTGCTTATGGTCTCCTCTTTGGTTTGGCTGATACGTGGGCTGCAAT 664
|||||||||||||||||||||||||||||||||||| ||||||||||| |||||||||||
Sbjct 592 CAAGGCTCATCTTTTTGCTTATGGTCTCCTCTTTGGGTTGGCTGATACTTGGGCTGCAAT 651
Query 665 GCCGGATAATAAGATGGTTGGGAAGGCTATCAAGGACCCTGAAAAGCTTAAGATCATCGC 724
||| |||||||||||||||||||||||||| |||||||| ||||||||||||||||||||
Sbjct 652 GCCTGATAATAAGATGGTTGGGAAGGCTATTAAGGACCCCGAAAAGCTTAAGATCATCGC 711
Query 725 TTCTAACCCGCAAAGATATACAGGGAAGCCTAGAGTGGGAACAATGAGAGAGTTACTGAG 784
|||||||||||||||||| || ||||||||||||||||||||||||||||||||||||||
Sbjct 712 TTCTAACCCGCAAAGATACACGGGGAAGCCTAGAGTGGGAACAATGAGAGAGTTACTGAG 771
Query 785 GAAGACTCAATACGTTCAGGAGAATTTCGGGAAAGTTACTATTCCGGTGTTTACGGCGCA 844
|||||||||||||||||||||||||||||||| ||||||||||||||| |||||||| ||
Sbjct 772 GAAGACTCAATACGTTCAGGAGAATTTCGGGAGAGTTACTATTCCGGTATTTACGGCACA 831
Query 845 CGGGACAGCGGATGGAGTAACATGTCCTACATCTTCGAAGCTACTATACGAAAAAGCGTC 904
||||||||||||||||||||||||||||||||| ||||||||| |||||||||| || ||
Sbjct 832 CGGGACAGCGGATGGAGTAACATGTCCTACATCGTCGAAGCTATTATACGAAAAGGCATC 891
Query 905 AAGCGCTGATAAAACGTTGAAGATCTATGAAGGGATGTATCACTCGCTGATTCAAGGAGA 964
||||||||||||||| |||||||||||||||||||||||||| |||||||||||||||||
Sbjct 892 AAGCGCTGATAAAACATTGAAGATCTATGAAGGGATGTATCATTCGCTGATTCAAGGAGA 951
Query 965 GCCTGACGAGAACGCTGAGATAGTCTTGAAGGATATGAGAGAGTGGATCGATGAGAAGG- 1023
||||||||||||||||||||| || ||||||||||||||||| ||||||||||| ||||
Sbjct 952 GCCTGACGAGAACGCTGAGATTGTGTTGAAGGATATGAGAGAATGGATCGATGA-AAGGG 1010
Query 1024 TTAAGAAGTATGGATCTAAAACCGCTTGAACAAAGCTACATTTGTGTTACAAGAACTTGA 1083
|||||| ||||||||||||||||||||||||||| |||||||||||||||||||||| ||
Sbjct 1011 TTAAGAGGTATGGATCTAAAACCGCTTGAACAAACCTACATTTGTGTTACAAGAACTCGA 1070
Query 1084 AGAGAAATGTATATTGATGTTATGATCCGTATCGTCGATTTGACTTGTTTTGTTGTCTGT 1143
||||||||||||||||||||||||||| |||||||||||||||||||||||| ||| |||
Sbjct 1071 AGAGAAATGTATATTGATGTTATGATCAGTATCGTCGATTTGACTTGTTTTGGTGTTTGT 1130
Query 1144 TGTAATCCAAGAACATGAATTTTCTGATGTAAGAACTTATAATATCATGGATTACAGAA 1202
|||||||||||||||||| ||||| ||||| |||||||||| ||||||| |||||||||
Sbjct 1131 TGTAATCCAAGAACATGACTTTTCGGATGTCAGAACTTATA-TATCATGTATTACAGAA 1188
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 45518762898
Database: halleri_transcript_ahg.fa
Posted date: Sep 25, 2014 2:02 AM
Number of letters in database: 38,939,717
Number of sequences in database: 32,672
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5