BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: halleri_transcript_ahg.fa
32,672 sequences; 38,939,717 total letters
Query= AT1G52770.1
Length=1723
Score E
Sequences producing significant alignments: (Bits) Value
Ahg474403 jgi|Araly1|474403|fgenesh2_kg.1__4357__AT1G52770.1 2250 0.0
> Ahg474403 jgi|Araly1|474403|fgenesh2_kg.1__4357__AT1G52770.1
Length=1730
Score = 2250 bits (1218), Expect = 0.0
Identities = 1572/1738 (90%), Gaps = 44/1738 (3%)
Strand=Plus/Plus
Query 1 AAGAATTTGCTGTTTCCTTTGGAATTGTACCTT-TGAGTCATGATGAGAGGACGACGTTT 59
||||||||| | |||||||||||||| |||||| |||| ||||||||| ||||||||||
Sbjct 1 AAGAATTTGTTCTTTCCTTTGGAATTTTACCTTGGGAGTTATGATGAGACGACGACGTTT 60
Query 60 CAATGTAAGACTTTTCAAGAACAGAGCAAACGTAATTGCTT--ACA--CA--CTCTATAA 113
||||||||||||||||||||||||||||||||||||||||| ||| || ||||||||
Sbjct 61 CAATGTAAGACTTTTCAAGAACAGAGCAAACGTAATTGCTTACACATGCACTCTCTATAA 120
Query 114 AACTAA-CTAAACCCACTTTACACACA-T-TACAACTTCCACCGTGaaaaa-aaCAAAGA 169
|||||| | | ||||||||||||||| | |||| ||||||||||||||| | ||||||
Sbjct 121 AACTAACCCACCCCCACTTTACACACACTACACAAATTCCACCGTGAAAAATACCAAAGA 180
Query 170 CATGGACAAAACATCTTCGCCGGAATCTGCCACCATCTCCACCAAATCTCCGTCAACCTC 229
||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 181 CATGGACGAAACATCTTCGCCGGAATCTGCCACCATCTCCACCAAATCTCCGTCAACCTC 240
Query 230 CACCGGAAAAATGGAGTGTTCTTGGTTCGACGATGGTTGCATTCTTGGCATTGATTATTT 289
||||||||||||||||||||||||||||||||||||||||||||||| ||||||| ||||
Sbjct 241 CACCGGAAAAATGGAGTGTTCTTGGTTCGACGATGGTTGCATTCTTGACATTGATAATTT 300
Query 290 CGTCAAAACCATCGCCGGAATCAAATCCAAAGGTGTTCGTCCTGATCTCATTGGATCCAT 349
||| |||||||| ||||||||||||||||||||||||||||| ||| |||| || |||||
Sbjct 301 CGTTAAAACCATTGCCGGAATCAAATCCAAAGGTGTTCGTCCCGATATCATCGGCTCCAT 360
Query 350 CATCGTTCATTACGCTTCC-CAATGGCTCCCTGACCTCTCCGACATCGTCCTAAACTCCG 408
|||||||||||||||||| | |||||||||||||| || ||| |||| ||||| |||
Sbjct 361 CATCGTTCATTACGCTTCTACG-TGGCTCCCTGACCTTTCTGACGTCGTTATAAACCCCG 419
Query 409 ATGA-CCAGCAACCGCAGCCGCAGCAGCAGTCAGAGAGCTTCTCTGTTACTGCGTTTGTG 467
| || || ||||| |||||||| || || || |||||||||||||||||||| ||||||
Sbjct 420 AAGAACC-GCAACTTCAGCCGCAACATCAATCGGAGAGCTTCTCTGTTACTGCATTTGTG 478
Query 468 ATGAAGAAACGTTCCTTCGTCGAAACTCTAATCGGAATCATCCCACCTGAGAGAGATTCC 527
||||||||||||| ||| ||||| |||||| |||||||||||||||| |||| |||||||
Sbjct 479 ATGAAGAAACGTTTCTTTGTCGAGACTCTACTCGGAATCATCCCACCAGAGAAAGATTCC 538
Query 528 GTTCCTTGTGATTTCCTCCTCCGTCTACTCAGAACCGCGAACATGGTCGGAGCAGATGCA 587
||||| ||||||||||||||||| || |||||||| |||||||||||||||||||| ||
Sbjct 539 GTTCCATGTGATTTCCTCCTCCGACTTCTCAGAACGGCGAACATGGTCGGAGCAGACACA 598
Query 588 AATTACAAGGCGGAGCTCGAGGCGAGGATTTCATGGCAGCTTGATCAAGCTTCACTCAAG 647
||||||||| |||||||||| ||||||||||||||||| ||||||||||| ||||||
Sbjct 599 AATTACAAGAAAGAGCTCGAGGAAAGGATTTCATGGCAGCTCGATCAAGCTTCCCTCAAG 658
Query 648 GAGCTAATGATACCTTCCTTTAGTCACACGTGTGGGACATTGCTCGATGTCGAGCTCATG 707
|||||||||||||||||||| |||||| ||| |||||||||||||| || |||||| ||
Sbjct 659 GAGCTAATGATACCTTCCTTCAGTCACTTGTGCGGGACATTGCTCGACGTTGAGCTCGTG 718
Query 708 ACTCGGTTGGTTAAGAAATTTGCTGGCTTAGACAACGAAGGAGTTAAATCCGGTGCTTCC 767
||||||||||||||||||||||||| |||| |||||||||||| |||||||||||||||
Sbjct 719 TCTCGGTTGGTTAAGAAATTTGCTGGATTAGGCAACGAAGGAGTCAAATCCGGTGCTTCC 778
Query 768 CTAATTAAAGTAGCGAAGCTCGTGGACTCTTACTTAGCAGAAGCCGCCTTAGACGGCGAT 827
|| ||||||| ||||||||||| |||||||||||||| ||||| |||||||||||||||
Sbjct 779 CTGGTTAAAGTGGCGAAGCTCGTCGACTCTTACTTAGCGGAAGCTGCCTTAGACGGCGAT 838
Query 828 TTAACCCTCTCGGAGTTTATATCTCTCG-TCGAAGCTCTCCCTAACCATGCTCGTGTAAC 886
|||| |||| |||||||||| || |||| | ||||||||||||||||| |||||||||||
Sbjct 839 TTAAGCCTCCCGGAGTTTATTTCCCTCGCT-GAAGCTCTCCCTAACCACGCTCGTGTAAC 897
Query 887 CGAAGATGGGTTATACCGTGCAATTGACACTTATCTCAAGGCACATCCTAACGTGACCAA 946
||||||||||||||||| ||||| |||||||||||||||||||||||||| ||||||||
Sbjct 898 AGAAGATGGGTTATACCGCGCAATAGACACTTATCTCAAGGCACATCCTAAAGTGACCAA 957
Query 947 GCAAGAAAGGAAGAGACTTTGTGGACTAATAGACAGCAATAAGCTATCAATGGAGGCATC 1006
|||||||||||||||||||||||||||| |||||||||| ||||||||||||||||||||
Sbjct 958 GCAAGAAAGGAAGAGACTTTGTGGACTAGTAGACAGCAAGAAGCTATCAATGGAGGCATC 1017
Query 1007 TCTTCACGCTGCACAGAACGATCGTTTACCGGTTAGAACTATTATTCAAGTTTTGTTCTC 1066
|||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||
Sbjct 1018 TCTTCACGCTGCACAGAACGATCGTTTACCGGTTAGAACTATTATTCAAGTTCTGTTCTC 1077
Query 1067 TGAACAGGCAAAGCTGAGTCATCGCAGCCACAACAATATTGAATGGAGTGGTTCATCGTT 1126
||| ||||||||||||| |||||||||||||||||| ||||| |||||||| ||||| ||
Sbjct 1078 TGAGCAGGCAAAGCTGATTCATCGCAGCCACAACAACATTGAGTGGAGTGGCTCATCATT 1137
Query 1127 CAGTGGCGTTAGGAGCAGCCCTAATCCTTCTGGTTCACACTACTCAGATTCTGGTCCTGC 1186
|||||||| ||||||||||||||||||||| ||||||||||||||||| ||||| |||||
Sbjct 1138 CAGTGGCGCTAGGAGCAGCCCTAATCCTTCCGGTTCACACTACTCAGAGTCTGGCCCTGC 1197
Query 1187 GCGGTGTACGTCCAAACGCGAGATTAATGTTCAGCAAGCAGAGATAAGAAGATTGAGAGA 1246
|||||||| ||||||||||||||| |||||||||||||||||||||||||||||||||||
Sbjct 1198 GCGGTGTATGTCCAAACGCGAGATAAATGTTCAGCAAGCAGAGATAAGAAGATTGAGAGA 1257
Query 1247 AGATATGGCGAAGCTTAAGTGCGAGTGTGAAGCGATGCAAACACAGTTACATAAG--CT- 1303
|| ||||||||||||||| ||||||||||||||||||||| |||||||||||| |
Sbjct 1258 GGACATGGCGAAGCTTAAGAGCGAGTGTGAAGCGATGCAAATGCAGTTACATAAGGACAA 1317
Query 1304 G--G-TTGAGAAGAAAGGAACTTGTACTAGTGGGAATAAAGGtttttttAGGTGGAAGAA 1360
| | |||| |||||||| |||||||||||||| ||||||||||||||||||||||||||
Sbjct 1318 GCTGATTGATAAGAAAGGTACTTGTACTAGTGGTAATAAAGGTTTTTTTAGGTGGAAGAA 1377
Query 1361 GTTGGGATTTAGGAGCGGTTTAAGCGTTAGCGTTGTGGAAAACACGAATGGTGAAGAGTT 1420
||||||||||||||||||||||||||||||||||||||||||||| ||||||||||| ||
Sbjct 1378 GTTGGGATTTAGGAGCGGTTTAAGCGTTAGCGTTGTGGAAAACACAAATGGTGAAGATTT 1437
Query 1421 TGGTAATAATGGAGAAGGTGAAAATTTTGAGTATGTGACTCAAACGCCTGGTAATATGAT 1480
|||| ||||| ||||||||||| | | |||||||||||||||||| |||||||||||||
Sbjct 1438 TGGTGATAATAGAGAAGGTGAAGAGTATGAGTATGTGACTCAAACACCTGGTAATATGAA 1497
Query 1481 GACAAAGCTTGTTAAAGGAAGAACACCTTCTAGGTGGAGAAAATCTATGTCTTGAAAAAC 1540
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1498 GACAAAGCTTGTTAAAGGAAGAACACCTTCTAGGTGGAGAAAATCTATGTCTTGAAAAAC 1557
Query 1541 CGTCTTTA--GT-TT------CTGTTCTTGTTGTTGCCTTCTTGTGCATTTGTTCTTCAG 1591
|||||||| || || ||||||||||| ||||||| |||||||||||||||||||
Sbjct 1558 CGTCTTTATCGTCTTTAGTTTCTGTTCTTGTTTTTGCCTTGTTGTGCATTTGTTCTTCAG 1617
Query 1592 TCTTTGTGTCTGAATCTAATATTTTGTACATTTTGTAAGCTCATATAGTCATATCGATGG 1651
||||||| ||||||||||| ||||||||||||||||| ||||||||||||||
Sbjct 1618 TCTTTGTTTCTGAATCTAA---------CATTTTGTAAGCTCATAAAGTCATATCGATGG 1668
Query 1652 CTTGTGGGTCAAGTTTCACAATGGTTTTTATCTTATCC-AAGACTCTCTTAGAATCTT 1708
||||||||||||||||| |||||||||| ||||| ||| || ||||||||||| ||||
Sbjct 1669 CTTGTGGGTCAAGTTTCTCAATGGTTTT-ATCTTCTCCGAA-ACTCTCTTAGATTCTT 1724
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 64639145765
Database: halleri_transcript_ahg.fa
Posted date: Sep 25, 2014 2:02 AM
Number of letters in database: 38,939,717
Number of sequences in database: 32,672
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5