BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: halleri_transcript_ahg.fa
32,672 sequences; 38,939,717 total letters
Query= AT1G52780.1
Length=3539
Score E
Sequences producing significant alignments: (Bits) Value
Ahg923808 jgi|Araly1|923808|scaffold_105089.1 4874 0.0
> Ahg923808 jgi|Araly1|923808|scaffold_105089.1
Length=3214
Score = 4874 bits (2639), Expect = 0.0
Identities = 3042/3235 (94%), Gaps = 34/3235 (1%)
Strand=Plus/Plus
Query 184 CTTCTTCTGTTCTTGTCAGTATGAAAACGGTAATAAATCTCCTTCCTTTGCTCTTTCTCT 243
||||| |||||||||||| ||||||||||||||||||||||||||||||| |||||||||
Sbjct 1 CTTCTACTGTTCTTGTCACTATGAAAACGGTAATAAATCTCCTTCCTTTGATCTTTCTCT 60
Query 244 CATTTGGGTTCCTCTTCTCTTCTCTAGTAATTGCTTCCTTCTCGGAAATGGAGCCCGTAC 303
|||||||| | ||||||||||||| |||||||||||||||||||||||||||||| |||
Sbjct 61 CATTTGGG-T--TCTTCTCTTCTCTCGTAATTGCTTCCTTCTCGGAAATGGAGCCCATAC 117
Query 304 CTATGTTTGAATCAATCGGCGAACACAGAGATGAATCCGCACCTAAGATTAGTTACGATC 363
|| | |||||||||||||| |||||||||||||||||| | ||||||||||| |||||||
Sbjct 118 CTGTTTTTGAATCAATCGGTGAACACAGAGATGAATCCTCCCCTAAGATTAGCTACGATC 177
Query 364 GTATCAATGATGTGAAGA-AAAAGTGCAAATCAGTGTTATCTTCAGCTTCTGAATTAAAG 422
| |||||||| ||||||| |||| ||||||||||||||||||||||||||||| ||||||
Sbjct 178 GGATCAATGAAGTGAAGAGAAAA-TGCAAATCAGTGTTATCTTCAGCTTCTGAGTTAAAG 236
Query 423 CTTGAAGATATCTCTAGAACTCCTAGAAAATCAAAAAGGAATCTTGGTTTTCGA-TACGG 481
||||||||||||||||| || | | ||| ||||| ||||||||| | |||||
Sbjct 237 CTTGAAGATATCTCTAGGGCT-C------A--AAAGAGGAAACTTGGTTTT-AAGTACGG 286
Query 482 AGATTGGAATCAAGATTCTGGTGATTCTCCGATTCTACCTTTTGATTCAACGAACACACT 541
||||||| ||||||||||||||||||||||||||||||| |||||||||||||||||| |
Sbjct 287 AGATTGGGATCAAGATTCTGGTGATTCTCCGATTCTACCGTTTGATTCAACGAACACA-T 345
Query 542 T-AGAAACTCGTCGACGAAGCCTATGAATCTTGTTTCTTTCTCAGTCACAGATCTAGATC 600
| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 346 TAAGAAACTCGTCGACGAAGCCTATGAATCTTGTTTCTTTCTCAGTCACAGATCTAGATC 405
Query 601 TCCCACATCGAACCAAGAAATACATAGGCGTCAATGGTGTTTTGCTTCTCGCGATCACAA 660
| || ||| |||||||||||||||| ||||| ||||||||||||||||||||||||||||
Sbjct 406 TTCCTCATAGAACCAAGAAATACATTGGCGTTAATGGTGTTTTGCTTCTCGCGATCACAA 465
Query 661 TGTTTAGCGAATTACCAAGCTTAAGATCTTATGGGCTCCGTGAGTTTGAGTTATGGCCAA 720
|||||| ||||||||||||||||||||||||||| |||||||||||||||||||||| |
Sbjct 466 TGTTTAATGAATTACCAAGCTTAAGATCTTATGGGATCCGTGAGTTTGAGTTATGGCCGA 525
Query 721 GTCATACTCAGCTTAAGATCTCGTTTCAAGGGATTTACGTTGAGAATGATGATGATGAAA 780
||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||
Sbjct 526 GTCATACTCAGCTTAAGATCTCGTTTCAAGGGATTTATGTTGAGAATGATGATGATGAAA 585
Query 781 GAGTTTTGTGTATGCTTGGTGAAACAATGTTACCTTCTCGTGATGAATCTGATTCTTCTA 840
||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||
Sbjct 586 GAGTTTTGTGTATGCTTGGTGAAACAATGTTACCTTCTCGTGATGAATCTGATTCCTCTA 645
Query 841 ATCCATGGAAATGGGTTAAAGAACATGACACGCCTCCTCTTTTACAAGATGATATGATTC 900
||||||||||||||||||| ||||||||||| ||||||||||||||||||||| ||||||
Sbjct 646 ATCCATGGAAATGGGTTAAGGAACATGACACACCTCCTCTTTTACAAGATGATTTGATTC 705
Query 901 TGCTTCTTCTTCGGTACCCGAAAAGCTTCACATTGACTAAAAGAGTGATTCAAGGAGAGC 960
|||||||||||||||| |||||||||||||||||||| |||||||| |||||||||||||
Sbjct 706 TGCTTCTTCTTCGGTATCCGAAAAGCTTCACATTGACGAAAAGAGTTATTCAAGGAGAGC 765
Query 961 TTACAAGTCTAAACCAGAAGCCTAGTCTCAAGCTTTTCGACAAGATCCATCTCTTTTCTC 1020
|||| ||||||||||||||||||||||| ||| ||||||||||| ||||||| |||||||
Sbjct 766 TTACTAGTCTAAACCAGAAGCCTAGTCTTAAGTTTTTCGACAAGGTCCATCTTTTTTCTC 825
Query 1021 AGCTTGGGAAATCTGTTCGTTACGATTTCGTCTCTAATGATTTGGTATCAAAGGCTTGCG 1080
||||||| ||||| ||||| |||||||||||||||||||||||||||||||||||||| |
Sbjct 826 AGCTTGGTAAATCGGTTCGATACGATTTCGTCTCTAATGATTTGGTATCAAAGGCTTGTG 885
Query 1081 ATCCATATCCTTATAAAAACGATACCTTTACGAGCTCTGGAAGTGGTGGTATCAATGTCT 1140
||||||||||||||||||||||||| |||||||| || |||| |||||||||||||||
Sbjct 886 ATCCATATCCTTATAAAAACGATACTTTTACGAGTTCAGGAA---GTGGTATCAATGTCT 942
Query 1141 ATAAAGAGAAAGGATTCTGTGATCTTCTTCAAAGAGTTACTAACCGCGCGCCTCTAACCG 1200
| |||| |||||| ||||||||||||||||||||||||||||||||||||||||| || |
Sbjct 943 ACAAAGGGAAAGGGTTCTGTGATCTTCTTCAAAGAGTTACTAACCGCGCGCCTCTCACGG 1002
Query 1201 TTGTACCTAACTGGAAATGCCACGGTACAGATGAGTACTGCAGCAAGTTAGGTCCGTTTG 1260
|||||||||||||||||||| | ||||| ||||||||||||||||| || ||||||||||
Sbjct 1003 TTGTACCTAACTGGAAATGCAATGGTACTGATGAGTACTGCAGCAAATTGGGTCCGTTTG 1062
Query 1261 CGTTTGACAAAGATATTAAATCAACGGATGGTAGCTTTAAAGATGTGAAGTTGTATATGC 1320
||| |||| ||||||||||| |||||||||||||||||||||||||||||||||||||
Sbjct 1063 CGTCTGACGGAGATATTAAATTGACGGATGGTAGCTTTAAAGATGTGAAGTTGTATATGC 1122
Query 1321 AAAACGTACATTGCGAGGAAACCGCAGCTCGGTCTCAATCCGATGCTGTTACAAAAGTCT 1380
|||| |||||||| |||||||||||||||||||||||| |||||||||||||||||||||
Sbjct 1123 AAAATGTACATTGTGAGGAAACCGCAGCTCGGTCTCAAACCGATGCTGTTACAAAAGTCT 1182
Query 1381 CGGCGGTTTTTCGAGCGGTTCATCCGAATGAGAATCTTTACATTTCAGGGATGAGATCAG 1440
||||||||||||| || ||||||||||||||||||||||| ||||||||| |||||||||
Sbjct 1183 CGGCGGTTTTTCGTGCTGTTCATCCGAATGAGAATCTTTATATTTCAGGGTTGAGATCAG 1242
Query 1441 GGATAGACAATATGACTGTTACAGCTGAAGGGATTTGGAAACCGTCTAGCGGGCAGTTAT 1500
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1243 GGATAGACAATATGACTGTTACAGCTGAAGGGATTTGGAAACCGTCTAGCGGGCAGTTAT 1302
Query 1501 GTATGGTTGGTTGCAGGCGAGGCCAAGTCGATGGCTGCAACGCTCGTATTTGTTTGTATA 1560
|||||||||| |||||||||||||||||||||||||||||||||||| | ||||||||||
Sbjct 1303 GTATGGTTGGGTGCAGGCGAGGCCAAGTCGATGGCTGCAACGCTCGTGTCTGTTTGTATA 1362
Query 1561 TTCCAACTACTTTTTCGATAAGGCAGCGAAGTATACTTGTAGGAACATTCTCCTGCCTAA 1620
|||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||
Sbjct 1363 TTCCAACTACTTTTTCGATAAGGCAGCGAAGTATACTTGTAGGAACTTTCTCCTGCCTAA 1422
Query 1621 ACACTGAGAAGAATTTGACTCCGTCTTTCTTCCCTTTGTCGTTTGAGAAGCTTGTGGAGC 1680
| || ||||||||||||||||| ||||||||||||||||| |||||||||||||||||||
Sbjct 1423 ATACAGAGAAGAATTTGACTCCATCTTTCTTCCCTTTGTCATTTGAGAAGCTTGTGGAGC 1482
Query 1681 CTATGGATATGCAGAATTACTTCCACTCTTCGGCTTCGCATCCGTTTTATAGTTACTCGA 1740
|||||||||||||||||||||| || ||||||||||||||||||||||||||||||||||
Sbjct 1483 CTATGGATATGCAGAATTACTTTCAGTCTTCGGCTTCGCATCCGTTTTATAGTTACTCGA 1542
Query 1741 AGTTAGATGATGCTGGTGCTATCCTTGAGAGAAACGAAGAGTTCTCTTTCGGAACTATAA 1800
||||||||||||||||||| |||||||||| ||| |||||||||||||||||||| ||||
Sbjct 1543 AGTTAGATGATGCTGGTGCCATCCTTGAGAAAAATGAAGAGTTCTCTTTCGGAACAATAA 1602
Query 1801 TCAAGAAGTCGGTAATGCATTTTCCGAAACTAGAAGACTCTGATGATTTGCTTTCGAGCC 1860
||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||
Sbjct 1603 TCAAGAAGTCGGTAATGCATTTTCCGAAACTGGAAGACTCTGATGATTTGCTTTCGAGCC 1662
Query 1861 TTTCTCTTCTTGCTGAGGACTTGACTTTCCATACACCTGCATTTACCGAGAAACGGGCCT 1920
|||||||||| ||||||||||||||||||||||| |||||||||||||| || | |||||
Sbjct 1663 TTTCTCTTCTAGCTGAGGACTTGACTTTCCATACCCCTGCATTTACCGACAAGCAGGCCT 1722
Query 1921 C-GGGAACTAATTTCGGCATGGATGTTCTCTCGCTCGGTCCTTTATTCGGACTTTTCTGG 1979
| ||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1723 CAGGG-ACTAATTTCGGCATGGATGTTCTCTCGCTCGGTCCTTTATTCGGACTTTTCTGG 1781
Query 1980 CGTACTTCGAACTTTTCCATCGCGGATCAG---AC-A--ACTCCTTACCGCACAAAAGCT 2033
|||||||||||||||||||| |||| ||| || | |||||||||||||||||||||
Sbjct 1782 CGTACTTCGAACTTTTCCATTTCGGAACAGACAACTACGACTCCTTACCGCACAAAAGCT 1841
Query 2034 GAATACACTGAGAAACAGCTTCTTCTGAACGTATCAGGTCAAATCTCACTTACAGGGGAA 2093
|||||||||||||||||||||||||| || ||||||| ||||||||||||||||||||||
Sbjct 1842 GAATACACTGAGAAACAGCTTCTTCTCAATGTATCAGCTCAAATCTCACTTACAGGGGAA 1901
Query 2094 AATTTCGGTAACTTCTCTGTTCTTTACTTGGAAGGTCTTTACGATGAGCATGTTGGGAAA 2153
||||| |||||||||||||||||||||||||||||||||||||||||||||||||||| |
Sbjct 1902 AATTTTGGTAACTTCTCTGTTCTTTACTTGGAAGGTCTTTACGATGAGCATGTTGGGAGA 1961
Query 2154 ATGTATCTTGTTGGATGCAGAGACGTGAGAGCCTCATGGAAAATCTTGTTTGAGAGTCCT 2213
||||||||||| |||||| |||||||||||||||| ||||||||||||||||||||||||
Sbjct 1962 ATGTATCTTGTAGGATGCCGAGACGTGAGAGCCTCGTGGAAAATCTTGTTTGAGAGTCCT 2021
Query 2214 GATCTTGAAGCTGGGCTAGATTGTTTGATCGACGTGGTGGTTTCTTATCCACCGATCAAA 2273
||||| ||||||||||||||||||||||||||||||||||||||||||||||| ||||||
Sbjct 2022 GATCTAGAAGCTGGGCTAGATTGTTTGATCGACGTGGTGGTTTCTTATCCACCTATCAAA 2081
Query 2274 TCACGGTGGTTGGCTGATCCAACTGCTAAAGTTTCAATATCTAGCAACAGACCAGAAGAT 2333
||||||||||||||||||||||||||||| ||||||||||| ||||||||||||||||||
Sbjct 2082 TCACGGTGGTTGGCTGATCCAACTGCTAAGGTTTCAATATCCAGCAACAGACCAGAAGAT 2141
Query 2334 GATCCTCTCTATTTTAAACCTATTAAGCTCAAAACAACTCCTATCTTTTACCGAAGGCAA 2393
|||||||||||||||||| | ||||||||||||||||||||||||||||||||||||||
Sbjct 2142 GATCCTCTCTATTTTAAAACGGTTAAGCTCAAAACAACTCCTATCTTTTACCGAAGGCAA 2201
Query 2394 CGCGAAGACATTCTTTCTCGTGCAGGCGTTGAAGGGATTCTCAGGGTTCTCACTCTTACA 2453
|| |||||||||||||||||||||||||||||||| || |||||||||||||| ||||||
Sbjct 2202 CGTGAAGACATTCTTTCTCGTGCAGGCGTTGAAGGAATCCTCAGGGTTCTCACGCTTACA 2261
Query 2454 TTCTCTATCGGATGCATCACGAGCCTGCTTTTTTACGTTAGTAGCAATACCGACTCGCTT 2513
||||||||||| || || ||||||| ||||||||| || |||||||||||||||||||||
Sbjct 2262 TTCTCTATCGGTTGTATTACGAGCCAGCTTTTTTATGTCAGTAGCAATACCGACTCGCTT 2321
Query 2514 CCTTTTGTGTCCCTTGTAATGCTTGGAGTTCAAGCTCTTGGTTATAGCTTGCCGTTGATC 2573
||||| || |||||||||||||| |||||||||||||| |||||||||||||||||||||
Sbjct 2322 CCTTTCGTTTCCCTTGTAATGCTAGGAGTTCAAGCTCTCGGTTATAGCTTGCCGTTGATC 2381
Query 2574 ACCGGAGCAGAGGCTCTCTTTAAAAGAAAAGCAGCTTCAGCAACAACATATGAAACACCT 2633
|| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 2382 ACTGGAGCAGAGGCTCTCTTTAAAAGAAAAGCAGCTTCAGCAACAACATATGAAACACCT 2441
Query 2634 TCTTATGATCTACAGAGAAGTCAATGGTTCAATGTGATTGATTACACTGTGAAGCTCCTC 2693
|| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 2442 TCATATGATCTACAGAGAAGTCAATGGTTCAATGTGATTGATTACACTGTGAAGCTCCTC 2501
Query 2694 GTGATGGTCTGCTTTCTACTTACTCTAAGGCTTTGTCAGAAAGTGTGGAAGTCCCGTGCC 2753
|| ||||| |||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 2502 GTCATGGTATGCTTTCTACTTACTCTAAGGCTTTGTCAGAAAGTGTGGAAGTCCCGTGCC 2561
Query 2754 AGATTGCTCACTCGAACACCTCAAGAACCGCATAAAGTTCCAAGTGATCGCCGTGTGCTT 2813
|||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||
Sbjct 2562 AGATTGCTCACTCGAACACCTCAAGAACCGCATAAAGTTCCAAGTGATCGCCGTGTACTT 2621
Query 2814 CTCGTTGTC-TTGATATTACACGCACTAGGATACATTGTCGCGCTGATTCGACATCCGGC 2872
||| ||| | ||||| || || |||||||||||||| || | |||||||||||||| ||
Sbjct 2622 CTCATTG-CTTTGATCTTGCATGCACTAGGATACATAATCACCCTGATTCGACATCCCGC 2680
Query 2873 AAGAGCAGATAGATTAGTTGGTGGAAGTTACGGATCTAATGCTTCAAATTGGTGGCAAAC 2932
|||||||||||||||||||| |||||||||||||||| |||||||||||||||||||||
Sbjct 2681 AAGAGCAGATAGATTAGTTGTTGGAAGTTACGGATCTGCTGCTTCAAATTGGTGGCAAAC 2740
Query 2933 TGAAACAGAGGAGTATATTGGTTTAGTTCAAGATTTCTTCTTGCTCCCTCAGGTTATTGC 2992
|||||||||||||||||||||||| |||||||||||||||||||| ||||||||||||||
Sbjct 2741 TGAAACAGAGGAGTATATTGGTTTGGTTCAAGATTTCTTCTTGCTTCCTCAGGTTATTGC 2800
Query 2993 TAATGCTATGTGGCAGATTGATTCCCGGCAGCCACTAAGGAAGCTATATTACTTCGGGAT 3052
||||| |||||||||||| |||||||||||||||||||||||||||||||||||||||||
Sbjct 2801 TAATGTTATGTGGCAGATCGATTCCCGGCAGCCACTAAGGAAGCTATATTACTTCGGGAT 2860
Query 3053 CACACTTGTCAGACTTTTCCCGCATGCCTATGACTACATC-GTTGGCTCTGTTCCTGATC 3111
|||||||||||| ||||||||||| | |||||||||| | |||||||||||||||||||
Sbjct 2861 CACACTTGTCAGGCTTTTCCCGCACACTTATGACTACA-CTGTTGGCTCTGTTCCTGATC 2919
Query 3112 CTTACTTCATTGGAGAAGAACATGAGTTTGTTAATCCGAATTTCGACTTCTTCTCTAAGT 3171
|||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 2920 CTTACTTCATCGGAGAAGAACATGAGTTTGTTAATCCGAATTTCGACTTCTTCTCTAAGT 2979
Query 3172 TTGGAGATATCGCCATACCTGTTACCGCGATTCTACTTGCTGTCATTGTGTTTGTTCAGC 3231
||||||||||||| |||||||||||||||||||||||| |||||||||||||||||||||
Sbjct 2980 TTGGAGATATCGCGATACCTGTTACCGCGATTCTACTTTCTGTCATTGTGTTTGTTCAGC 3039
Query 3232 AGAGATGGGACTATGACAAGCTTTCACAAGCTTTATCCTTTGGACGGTTTAGGATTCTCC 3291
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 3040 AGAGATGGGACTATGACAAGCTTTCACAAGCTTTATCCTTTGGACGGTTTAGGATTCTCC 3099
Query 3292 CTTCTCGTTCTGTTAAGTACGAGAGAGTAATGTCCGAATCCGAAATGGTTTCGGGAGCCC 3351
|||||||||||||||||||||||||||| ||||| ||||||||||||||||| |||| |
Sbjct 3100 CTTCTCGTTCTGTTAAGTACGAGAGAGTCATGTCTGAATCCGAAATGGTTTCTGGAGTCG 3159
Query 3352 GTGTCAATGGAAATCGCGGTGATGAAGAATGATTTT-TACTCGATTTTGTGTATT 3405
||||||||||||||||| ||||||| |||||||||| ||||||||||||||||||
Sbjct 3160 GTGTCAATGGAAATCGCAGTGATGATGAATGATTTTGTACTCGATTTTGTGTATT 3214
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 133658196376
Database: halleri_transcript_ahg.fa
Posted date: Sep 25, 2014 2:02 AM
Number of letters in database: 38,939,717
Number of sequences in database: 32,672
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5