BLASTN 2.2.26+ Reference: Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000), "A greedy algorithm for aligning DNA sequences", J Comput Biol 2000; 7(1-2):203-14. Database: halleri_transcript_ahg.fa 32,672 sequences; 38,939,717 total letters Query= AT1G52825.1 Length=479 Score E Sequences producing significant alignments: (Bits) Value Ahg923815 jgi|Araly1|923815|scaffold_105096.1 353 5e-97 > Ahg923815 jgi|Araly1|923815|scaffold_105096.1 Length=278 Score = 353 bits (191), Expect = 5e-97 Identities = 242/266 (91%), Gaps = 6/266 (2%) Strand=Plus/Plus Query 58 TTGGAGTCTCATACAAATGTCATCAGTAGGAACATCAAAGGGGATTCTAGAAATCGCCAA 117 |||||||||| |||||||||| |||||||||||||||||||||||||| ||||||||||| Sbjct 5 TTGGAGTCTCTTACAAATGTCGTCAGTAGGAACATCAAAGGGGATTCTTGAAATCGCCAA 64 Query 118 ATTCGGTGTATACGTCGCAGTACCAATCGTCCTAATCTATACATTCGCCAACAACAGCAC 177 |||||||||||||||||| || || ||||||||||| ||||||||||||||||||||||| Sbjct 65 ATTCGGTGTATACGTCGCTGTTCCGATCGTCCTAATGTATACATTCGCCAACAACAGCAC 124 Query 178 CAACATCAAGAAATTCATGGGCAATCATTCATACGTTGTTTATCCTAAAGAAGCTCCTCG 237 ||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct 125 CAATATCAAGAAATTCATGGGCAATCATTCATACGTTGTTTATCCTAAAGAAGCTCCTCG 184 Query 238 TCCTCCTTCACCTGAAGAGCTACGTGAGATGGCTAAACAACTTGCCCTCaaaaaaaaaaa 297 ||||||||| |||||||||||||| |||||||||||| || |||| | ||| || || | Sbjct 185 TCCTCCTTCGCCTGAAGAGCTACGAGAGATGGCTAAAGAAATTGCTCGCAACAAGAACA- 243 Query 298 aaaTCCCTTCTAATTGAT-CTA-TTG 321 ||||||| ||||||| ||| ||| Sbjct 244 ---TCCCTTCAAATTGATTCTACTTG 266 Lambda K H 1.33 0.621 1.12 Gapped Lambda K H 1.28 0.460 0.850 Effective search space used: 17360792995 Database: halleri_transcript_ahg.fa Posted date: Sep 25, 2014 2:02 AM Number of letters in database: 38,939,717 Number of sequences in database: 32,672 Matrix: blastn matrix 1 -2 Gap Penalties: Existence: 0, Extension: 2.5