BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: halleri_transcript_ahg.fa
32,672 sequences; 38,939,717 total letters
Query= AT1G52825.1
Length=479
Score E
Sequences producing significant alignments: (Bits) Value
Ahg923815 jgi|Araly1|923815|scaffold_105096.1 353 5e-97
> Ahg923815 jgi|Araly1|923815|scaffold_105096.1
Length=278
Score = 353 bits (191), Expect = 5e-97
Identities = 242/266 (91%), Gaps = 6/266 (2%)
Strand=Plus/Plus
Query 58 TTGGAGTCTCATACAAATGTCATCAGTAGGAACATCAAAGGGGATTCTAGAAATCGCCAA 117
|||||||||| |||||||||| |||||||||||||||||||||||||| |||||||||||
Sbjct 5 TTGGAGTCTCTTACAAATGTCGTCAGTAGGAACATCAAAGGGGATTCTTGAAATCGCCAA 64
Query 118 ATTCGGTGTATACGTCGCAGTACCAATCGTCCTAATCTATACATTCGCCAACAACAGCAC 177
|||||||||||||||||| || || ||||||||||| |||||||||||||||||||||||
Sbjct 65 ATTCGGTGTATACGTCGCTGTTCCGATCGTCCTAATGTATACATTCGCCAACAACAGCAC 124
Query 178 CAACATCAAGAAATTCATGGGCAATCATTCATACGTTGTTTATCCTAAAGAAGCTCCTCG 237
||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 125 CAATATCAAGAAATTCATGGGCAATCATTCATACGTTGTTTATCCTAAAGAAGCTCCTCG 184
Query 238 TCCTCCTTCACCTGAAGAGCTACGTGAGATGGCTAAACAACTTGCCCTCaaaaaaaaaaa 297
||||||||| |||||||||||||| |||||||||||| || |||| | ||| || || |
Sbjct 185 TCCTCCTTCGCCTGAAGAGCTACGAGAGATGGCTAAAGAAATTGCTCGCAACAAGAACA- 243
Query 298 aaaTCCCTTCTAATTGAT-CTA-TTG 321
||||||| ||||||| ||| |||
Sbjct 244 ---TCCCTTCAAATTGATTCTACTTG 266
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 17360792995
Database: halleri_transcript_ahg.fa
Posted date: Sep 25, 2014 2:02 AM
Number of letters in database: 38,939,717
Number of sequences in database: 32,672
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5