BLASTN 2.2.26+


Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.



Database: halleri_transcript_ahg.fa
           32,672 sequences; 38,939,717 total letters



Query= AT1G52827.1

Length=331
                                                                      Score     E
Sequences producing significant alignments:                          (Bits)  Value

  Ahg914459 jgi|Araly1|914459|Al_scaffold_0001_4713                    241    3e-63


> Ahg914459 jgi|Araly1|914459|Al_scaffold_0001_4713
Length=180

 Score =  241 bits (130),  Expect = 3e-63
 Identities = 171/189 (90%), Gaps = 9/189 (5%)
 Strand=Plus/Plus

Query  66   ATGACAATGTCAAGAAACGGCAAGACGAACAAGGCTGCTTATTCGCAACGTTTTACGCGT  125
            ||| |||||||||||||| |||||||||||| |||||||||| |||||||||||||| ||
Sbjct  1    ATGGCAATGTCAAGAAACAGCAAGACGAACACGGCTGCTTATACGCAACGTTTTACGGGT  60

Query  126  TGTTCTGTTGCTGTTGCTGCTACGAGAAGTGCAAGTGTTGTTGCTGCTGCGTTTGATTTC  185
            ||||||||||||||||||||||||||||||||||||||||||| |  |||||||||||||
Sbjct  61   TGTTCTGTTGCTGTTGCTGCTACGAGAAGTGCAAGTGTTGTTG-T--TGCGTTTGATTTC  117

Query  186  TATATATGTATCATCATCTCAACATTACTCTCATTAATTGTGTCCCTCGCATCACAATTG  245
            |||    ||||||||||||||| |||| |||||||| | |||||||||||||| || |||
Sbjct  118  TAT----GTATCATCATCTCAAAATTATTCTCATTA-T-GTGTCCCTCGCATCGCATTTG  171

Query  246  CTCTTTTAG  254
            |||||||||
Sbjct  172  CTCTTTTAG  180



Lambda     K      H
    1.33    0.621     1.12 

Gapped
Lambda     K      H
    1.28    0.460    0.850 

Effective search space used: 11713765823


  Database: halleri_transcript_ahg.fa
    Posted date:  Sep 25, 2014  2:02 AM
  Number of letters in database: 38,939,717
  Number of sequences in database:  32,672



Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5