BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: halleri_transcript_ahg.fa
32,672 sequences; 38,939,717 total letters
Query= AT1G52830.1
Length=829
Score E
Sequences producing significant alignments: (Bits) Value
Ahg474409 jgi|Araly1|474409|fgenesh2_kg.1__4363__AT1G52830.1 918 0.0
> Ahg474409 jgi|Araly1|474409|fgenesh2_kg.1__4363__AT1G52830.1
Length=660
Score = 918 bits (497), Expect = 0.0
Identities = 611/666 (92%), Gaps = 8/666 (1%)
Strand=Plus/Plus
Query 1 AACAAGAGAAGTGCTTGAGAGaaaaaaaaagtatcaaaacttcatatagccaaatttaaa 60
||||| ||||||||||||||| | ||||||| |||||||||||||||||||| |||
Sbjct 1 AACAATAGAAGTGCTTGAGAG--GAGAAAAGTAACAAAACTTCATATAGCCAAAGGCAAA 58
Query 61 caaaaagaaaa-aagag-aagaaataaaTGGCAAAGGAAGGTCTAGCACTCGAGATCACA 118
|||||| |||| ||||| |||||||||||||||||||||||||||| ||| |||||||||
Sbjct 59 CAAAAA-AAAAGAAGAGAAAGAAATAAATGGCAAAGGAAGGTCTAGGACTTGAGATCACA 117
Query 119 GAGCTTCGATTGGGTCTTCCAGGAGATAATTATAGCGAAATATCAGTATGCGGATCGAGT 178
||||||||||||||||||||||||||||||||||||||||| ||| | || |||||||
Sbjct 118 GAGCTTCGATTGGGTCTTCCAGGAGATAATTATAGCGAAATCTCAATTTGGGGATCGA-- 175
Query 179 AAGAAGAAGAAGAGGGTGCTCTCGGATATGATGACCTCATCAGCGTTAGATACTGAGAAT 238
| ||| ||||||||||||||||||||||||||||| || ||| ||||| |||||||||||
Sbjct 176 A-GAATAAGAAGAGGGTGCTCTCGGATATGATGACATCGTCATCGTTAAATACTGAGAAT 234
Query 239 GAAAACAGCGTCGTTTCATCAGTTGAAGATGAATCACTGCCGGTTGTGAAGAGTCAAGCG 298
|||||| ||||||||||||| | ||| |||||||| | ||||| ||||||||||| |||
Sbjct 235 GAAAACGGCGTCGTTTCATCGGCTGAGGATGAATCTTTACCGGTGGTGAAGAGTCAGGCG 294
Query 299 GTGGGATGGCCACCTGTGTGTTCTTACAGGAGAAAGAAGAACAATGAGGAAGCATCGAAA 358
||||| |||||||||||||||||||| |||||| ||||||||||||||||||||||||||
Sbjct 295 GTGGGGTGGCCACCTGTGTGTTCTTATAGGAGACAGAAGAACAATGAGGAAGCATCGAAA 354
Query 359 GCTATAGGCTACGTGAAAGTGAGCATGGATGGTGTGCCATACATGAGGAAGATTGACCTT 418
|| ||||| ||||||||||||||||||||||||||||||||| |||||||||||||||||
Sbjct 355 GCGATAGGGTACGTGAAAGTGAGCATGGATGGTGTGCCATACTTGAGGAAGATTGACCTT 414
Query 419 GGTTCGAGCAACAGTTATATTAATCTAGTCACGGTTCTTGAGAATCTCTTCGGCTGTCTT 478
||||||||||||||||||| |||||||| |||||||||||||||||||||||||||||||
Sbjct 415 GGTTCGAGCAACAGTTATAATAATCTAGCCACGGTTCTTGAGAATCTCTTCGGCTGTCTT 474
Query 479 GGCATAGGAGTGGCGAAGGAGGGTAAGAAGTGTGAATACATTATTATATACGAAGACAAG 538
||| ||||||| ||||||||||||||||| || |||||||||||||||||||||||||||
Sbjct 475 GGCCTAGGAGTAGCGAAGGAGGGTAAGAAATGCGAATACATTATTATATACGAAGACAAG 534
Query 539 GATAGAGACTGGATGCTCGTCGGAGATGTACCTTGGCAGATGTTTAAAGAATCATGCAAG 598
|||||||||||||||||||| ||||||||||||||||||||||| |||||||||||||||
Sbjct 535 GATAGAGACTGGATGCTCGTTGGAGATGTACCTTGGCAGATGTTCAAAGAATCATGCAAG 594
Query 599 AGGCTGAGGATCGTGAAGAGATCAGATGCAACTGGTTTTGGTCTCCAGCAAGATTAATCA 658
||||| ||||||||||||||||||||||| ||||||||||| || |||| |||||||| |
Sbjct 595 AGGCTTAGGATCGTGAAGAGATCAGATGCGACTGGTTTTGGCCTGCAGCGAGATTAATTA 654
Query 659 TACTAG 664
||||||
Sbjct 655 TACTAG 660
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 30650825268
Database: halleri_transcript_ahg.fa
Posted date: Sep 25, 2014 2:02 AM
Number of letters in database: 38,939,717
Number of sequences in database: 32,672
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5