BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: halleri_transcript_ahg.fa
32,672 sequences; 38,939,717 total letters
Query= AT1G52855.1
Length=553
Score E
Sequences producing significant alignments: (Bits) Value
Ahg923818 jgi|Araly1|923818|scaffold_105099.1 427 4e-119
> Ahg923818 jgi|Araly1|923818|scaffold_105099.1
Length=251
Score = 427 bits (231), Expect = 4e-119
Identities = 243/249 (98%), Gaps = 0/249 (0%)
Strand=Plus/Plus
Query 134 GAGTTTTCTTCTTGAAGAAGATATGGTTTGTTTCTGTTTCTTGGTTGATCAGACAAGGAA 193
||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 3 GAGTTTTCTTCTTAAAGAAGATATGGTTTGTTTCTGTTTCTTGGTTGATCAGACAAGGAA 62
Query 194 AGTGAAACGGAGCAAACCGGCGGCTGGAACTTGCTCACGGTGTGGCCATTGTGCGAGCAT 253
||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 63 AGTGAAACGAAGCAAACCGGCGGCTGGAACTTGCTCACGGTGTGGCCATTGTGCGAGCAT 122
Query 254 CGCCGACATGAAGACTTCGACTAGATTCTGTTTCATTCCTATTTATTGGAGATCTTGGAG 313
|||||||||||||||||| || ||||||||||||||||||||||||||||||||||||||
Sbjct 123 CGCCGACATGAAGACTTCAACAAGATTCTGTTTCATTCCTATTTATTGGAGATCTTGGAG 182
Query 314 AGCTGTTGTTTGCAGTTTCTGTGGCTCTGTTCTTAAGTCTTATCGTTGAACCAGATTTTC 373
|||||||||||||||||||||||| ||||||||||||||||||||||||| |||||||||
Sbjct 183 AGCTGTTGTTTGCAGTTTCTGTGGTTCTGTTCTTAAGTCTTATCGTTGAATCAGATTTTC 242
Query 374 CAAATTTAA 382
|||||||||
Sbjct 243 CAAATTTAA 251
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 20184306581
Database: halleri_transcript_ahg.fa
Posted date: Sep 25, 2014 2:02 AM
Number of letters in database: 38,939,717
Number of sequences in database: 32,672
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5