BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: halleri_transcript_ahg.fa
32,672 sequences; 38,939,717 total letters
Query= AT1G52870.2
Length=1441
Score E
Sequences producing significant alignments: (Bits) Value
Ahg474411 jgi|Araly1|474411|fgenesh2_kg.1__4365__AT1G52870.2 1908 0.0
> Ahg474411 jgi|Araly1|474411|fgenesh2_kg.1__4365__AT1G52870.2
Length=1391
Score = 1908 bits (1033), Expect = 0.0
Identities = 1292/1412 (92%), Gaps = 37/1412 (3%)
Strand=Plus/Plus
Query 16 ATAAGATAACGTCCGTTTCAAAT------TCCCCCAACTCGGAGAAACCGAAGCGAGTCT 69
||||||||| ||||||||||||| |||||||||||||||||||||||| |||||
Sbjct 1 ATAAGATAAAGTCCGTTTCAAATCCCCCCCCCCCCAACTCGGAGAAACCGAAGCAAGTCT 60
Query 70 GACTCTCTGAGTCGTCACCACCGAGTCAACTC-T-GTCTCCGCCATGGCTGCTGCTTCAC 127
||||| |||| |||| |||||||||||||| | |||||||||||||||||||||||||
Sbjct 61 GACTCACTGA---GTCATCACCGAGTCAACTCTTCGTCTCCGCCATGGCTGCTGCTTCAC 117
Query 128 TCCACACTTCAATCTCACCACGTAGCTTCCTTCCTCTCTCCAAACCATCTCTAAAACCTC 187
||||||| |||||||| ||||||||||||||||||||||| ||||| ||||| |||||||
Sbjct 118 TCCACACCTCAATCTCTCCACGTAGCTTCCTTCCTCTCTCTAAACCGTCTCTGAAACCTC 177
Query 188 ACCGTTCCCAAATTCTACTGAGAAACAAACAGAGGAATTGCGTTTCGTGCGCATTGATCC 247
|||||||||||||| | |||||||||||||||||| | ||||||| |||||||
Sbjct 178 ACCGTTCCCAAATTTTCCTGAGAAACAAACAGAGG-A--------CGTGCGCGTTGATCC 228
Query 248 GTGACGAAATCGACCTGATTCCGGTTCAGAGCCGAGATCGGACCGACCATGAGGAAGGTT 307
|||||||||||||| ||||||||||||||||||||||||| || ||||||||||||||||
Sbjct 229 GTGACGAAATCGACGTGATTCCGGTTCAGAGCCGAGATCGTACGGACCATGAGGAAGGTT 288
Query 308 CGGTGGTAGTGATGAGCACTGAGACGGCGGTTGATGGTAATGAATCGGTTGTTGTAGGTT 367
|||| || || ||||| ||||||||| | | |||| ||| ||| |||| |||||||| |
Sbjct 289 CGGTCGTGGTTATGAGTGCTGAGACGGAGATAGATGTTAACGAACCGGTGGTTGTAGGGT 348
Query 368 TTAGTGCTGCGACGAGTGAAGGTCAGCTTTCGTTAGAAGGGTTTCCTTCTTCTTCTTCTT 427
|||||||||| ||||| ||||||||||||||||| |||||| | ||| ||||||
Sbjct 349 TTAGTGCTGCAACGAGCGAAGGTCAGCTTTCGTTGGAAGGG------T-TTC--CTTCTT 399
Query 428 CGGGAGCTGATTTAGGAGATGAAAAGAGAAGAGAGAACGAAGAAATGGAGAAGATGATCG 487
|||||| |||||| |||||||| ||||||||||||||||||||||||||||||||||| |
Sbjct 400 CGGGAGGTGATTTGGGAGATGAGAAGAGAAGAGAGAACGAAGAAATGGAGAAGATGATTG 459
Query 488 ATCGAACCATTAACGCTACGATTGTTTTAGCTGCTGGTTCTTACGCTATTACCAAATTGC 547
|| ||||||||||||||||||||||||||||||||||||||||||| |||||||||||||
Sbjct 460 ATAGAACCATTAACGCTACGATTGTTTTAGCTGCTGGTTCTTACGCCATTACCAAATTGC 519
Query 548 TTACCATCGATCATGATTATTGGCATGGATGGACTCTGTTTGAGATACTAAGATATGCTC 607
| ||||| ||||||||||||||||||| |||||| |||||||| || |||||||||||||
Sbjct 520 TCACCATTGATCATGATTATTGGCATGTATGGACACTGTTTGAAATTCTAAGATATGCTC 579
Query 608 CTCAACATAACTGGATTGCTTACGAAGAAGCGCTAAAGCAAAACCCGGTTCTAGCAAAAA 667
|||||||||||||||||||||||||||||||| ||||||||||||||||||| || ||||
Sbjct 580 CTCAACATAACTGGATTGCTTACGAAGAAGCGTTAAAGCAAAACCCGGTTCTGGCGAAAA 639
Query 668 TGGTCATTAGTGGAGTTGTCTACTCTGTAGGAGATTGGATAGCTCAGTGTTACGAAGGCA 727
||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 640 TGGTCATAAGTGGAGTTGTCTACTCTGTAGGAGATTGGATAGCTCAGTGTTACGAAGGCA 699
Query 728 AACCGTTGTTTGAAATTGATAGAGCAAGAACATTGAGATCAGGACTAGTAGGTTTCACTC 787
|||| ||||||||||||||| |||||||||||||||||||||||||||| ||||| ||||
Sbjct 700 AACCCTTGTTTGAAATTGATCGAGCAAGAACATTGAGATCAGGACTAGTGGGTTTTACTC 759
Query 788 TCCATGGCTCGTTATCGCATTTCTATTACCAGTTCTGTGAAGAGCTTTTCCCGTTTCAAG 847
||||||||||||| || ||||||||||||||||||||||||||||||||||| |||||||
Sbjct 760 TCCATGGCTCGTTGTCTCATTTCTATTACCAGTTCTGTGAAGAGCTTTTCCCTTTTCAAG 819
Query 848 ATTGGTGGGTGGTTCCTGTGAAAGTTGCCTTTGATCAAACAGTCTGGTCAGCTATATGGA 907
||||||||||||||||||||||||||| ||||||||||||||| ||||| ||||||||||
Sbjct 820 ATTGGTGGGTGGTTCCTGTGAAAGTTGTCTTTGATCAAACAGTATGGTCGGCTATATGGA 879
Query 908 ACAGTATTTACTTCACGGTTCTT-GGTTTCCTGCGT-TTCGAATCGCCTATCAGCATCTT 965
| ||||||||||||||||||||| ||||| |||||| || ||||| ||| |||| |||||
Sbjct 880 ATAGTATTTACTTCACGGTTCTTGGGTTT-CTGCGTCTT-GAATCTCCTCTCAGTATCTT 937
Query 966 CAAAGAACTAAAAGCTACGTTCTTGCCTATGCTAACAGCAGGTTGGAAGCTTTGGCCATT 1025
|||||||||||||||||| ||||||||||||||||| ||||||||||| |||||||||||
Sbjct 938 CAAAGAACTAAAAGCTACCTTCTTGCCTATGCTAACCGCAGGTTGGAAACTTTGGCCATT 997
Query 1026 TGCTCATTTGATCACATACGGTTTGGTCCCAGTAGAACAACGACTTCTCTGGGTAGATTG 1085
|||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||
Sbjct 998 TGCTCATTTGATCACATACGGTTTGGTCCCTGTAGAACAACGACTTCTCTGGGTAGATTG 1057
Query 1086 CGTGGAGCTTATTTGGGTCACTATACTTTCGACTTACTCGAACGAGAAATCAGAAGCTAG 1145
|||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||
Sbjct 1058 CGTGGAGCTTATTTGGGTCACTATACTTTCGACTTACTCGAATGAGAAATCAGAAGCTAG 1117
Query 1146 AATCTCGGAATCTGTCATTGAGACCTCTTCGAGTTCTACTACAACCATTGATCCCTCTAA 1205
||||||||||||||||||||| ||||||||||||||||| ||| ||||||||||||| ||
Sbjct 1118 AATCTCGGAATCTGTCATTGAAACCTCTTCGAGTTCTACAACATCCATTGATCCCTCCAA 1177
Query 1206 GGAATGAGAAAGCAGAAAAGCCAAATCGGGTCTTATCAGCATCATATTGTATATATACA- 1264
|||||||||||||||||||| |||||| ||||| |||||| ||||||||||||||||||
Sbjct 1178 GGAATGAGAAAGCAGAAAAGGCAAATCAGGTCTAATCAGCTTCATATTGTATATATACAC 1237
Query 1265 -GAGTTTAGCCAATAAAGTGGCCAGAGATTTGAGATTGATACAGAGGAGATGGAGATATT 1323
|||||||||||| | |||||| |||||||||||||||||||||||||||| |||||||
Sbjct 1238 AGAGTTTAGCCAACAGAGTGGCTGGAGATTTGAGATTGATACAGAGGAGATGAAGATATT 1297
Query 1324 CAAATGGATGTATCTATTAATGTGTAAGAAAAATAACCAGAATCTTGAATACACAATAGA 1383
||||||||||||||| |||||||||||||| ||||||||||||||||||||||||| |||
Sbjct 1298 CAAATGGATGTATCTCTTAATGTGTAAGAATAATAACCAGAATCTTGAATACACAAGAGA 1357
Query 1384 AA-CAATTTTATTTGATCACAGTGCTCTAATA 1414
|| || ||||||||||||||||||||||||||
Sbjct 1358 AAACA-TTTTATTTGATCACAGTGCTCTAATA 1388
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 53897696675
Database: halleri_transcript_ahg.fa
Posted date: Sep 25, 2014 2:02 AM
Number of letters in database: 38,939,717
Number of sequences in database: 32,672
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5