BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: halleri_transcript_ahg.fa
32,672 sequences; 38,939,717 total letters
Query= AT1G52890.1
Length=1280
Score E
Sequences producing significant alignments: (Bits) Value
Ahg474413 jgi|Araly1|474413|fgenesh2_kg.1__4367__AT1G52890.1 1753 0.0
Ahg478996 jgi|Araly1|478996|fgenesh2_kg.3__1697__AT3G15500.1 601 5e-171
Ahg478997 jgi|Araly1|478997|fgenesh2_kg.3__1698__AT3G15510.1 122 5e-27
> Ahg474413 jgi|Araly1|474413|fgenesh2_kg.1__4367__AT1G52890.1
Length=1232
Score = 1753 bits (949), Expect = 0.0
Identities = 1148/1241 (93%), Gaps = 26/1241 (2%)
Strand=Plus/Plus
Query 1 AAACATTATTGTCaaaaataagaaagaaag-aaaaaaaTATGGGTATCCAAGAAACTGAC 59
|||||||||||||||||||||||||||||| ||||||| |||||||||||||||||||||
Sbjct 1 AAACATTATTGTCAAAAATAAGAAAGAAAGAAAAAAAAAATGGGTATCCAAGAAACTGAC 60
Query 60 CCGTTAACGCAATTGAGTTTACCACCGGGTTTCCGATTTTACCCGACCGATGAAGAGCTT 119
|||||| | || ||||| |||||||| |||||||||||||||||||||||||||||||||
Sbjct 61 CCGTTAGCCCAGTTGAGCTTACCACCAGGTTTCCGATTTTACCCGACCGATGAAGAGCTT 120
Query 120 ATGGTTCAATATCTCTGTAGAAAAGCAGCTGGTTACGATTTCTCTCTTCAGCTCATCGCC 179
|||||||||||||| || |||||||||||||||||||||||| |||||||||||||||||
Sbjct 121 ATGGTTCAATATCTATGCAGAAAAGCAGCTGGTTACGATTTCCCTCTTCAGCTCATCGCC 180
Query 180 GAAATAGATCTTTACAAATTCGATCCATGGGTTTTACCAAATAAAGCATTATTTGGAGAA 239
||||| ||||||||||| || ||||||||||||||||||||||| |||||||||||||||
Sbjct 181 GAAATCGATCTTTACAAGTTTGATCCATGGGTTTTACCAAATAAGGCATTATTTGGAGAA 240
Query 240 AAAGAATGGTAtttttttAGTCCTAGGGATAGAAAATATCCAAACGGGTCAAGACCTAAC 299
||||||||||||||||| ||||| |||||||||||||| ||||||||||||||||| ||
Sbjct 241 AAAGAATGGTATTTTTTCAGTCCGAGGGATAGAAAATACCCAAACGGGTCAAGACCGAAT 300
Query 300 CGGGTTGCCGGATCGGGTTATTGGAAAGCTACGGGTACGGATAAAATAATCTCGACGGAA 359
||||||||||| |||||||| ||||| ||||||||||||||||||||||| |||||||||
Sbjct 301 CGGGTTGCCGGGTCGGGTTACTGGAAGGCTACGGGTACGGATAAAATAATATCGACGGAA 360
Query 360 GGACAAAGAGTTGGTATTAAAAAAGCTTTGGTGTTTTACATCGGAAAAGCTCCTAAAGGT 419
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 361 GGACAAAGAGTTGGTATTAAAAAAGCTTTGGTGTTTTACATCGGAAAAGCTCCTAAAGGT 420
Query 420 ACTAAAACCAATTGGATCATGCATGAGTATCGTCTCATTGAACCTTCTCGTAGAAACGGA 479
|| ||||||||||||||||||||||||||||||||||||||||| |||||||||||||||
Sbjct 421 ACAAAAACCAATTGGATCATGCATGAGTATCGTCTCATTGAACCCTCTCGTAGAAACGGA 480
Query 480 AGCACTAAGTTGGATGATTGGGTTCTATGTCGAATATACAAGAAGCAATCAAGTGCACAA 539
||||| ||||||||||||||||||||||||||||||||||| ||||||||||| ||||||
Sbjct 481 AGCACAAAGTTGGATGATTGGGTTCTATGTCGAATATACAAAAAGCAATCAAGCGCACAA 540
Query 540 AAACAAGTTTACGATAATGGAATCGCGAATGCTAGAGAATTCAGCAACAACGGTACTTCG 599
|||||||||||||| |||| |||| ||| ||||||||||||||||||||| |||||||||
Sbjct 541 AAACAAGTTTACGAAAATGTAATCACGAGTGCTAGAGAATTCAGCAACAATGGTACTTCG 600
Query 600 TCCACGACGTCGTCTTCTTCTCACTTTGAAGACGTTCTTGATTCGTTTCATCAAGAGATC 659
|| || ||||||||||||||||||||||||||||||||||||||||||||||| ||||||
Sbjct 601 TCAACAACGTCGTCTTCTTCTCACTTTGAAGACGTTCTTGATTCGTTTCATCATGAGATC 660
Query 660 GACAACAGAAATTTCCAGTTTTCTAACCCAAACCGCATCTCGTCGCTCAGACCGGACTTA 719
|||||||| ||||||||||||||||| |||||||| |||||||||||||||||||| ||
Sbjct 661 GACAACAGGAATTTCCAGTTTTCTAATCCAAACCGGTTCTCGTCGCTCAGACCGGACATA 720
Query 720 ACCGAACAGAAAACCGGGTTCCACGGTCTTGCGGATACTTCTAACTTCGATTGGGCTAGT 779
||||||||||||||||||||| ||||||||| ||||||||| ||||||||||||| ||||
Sbjct 721 ACCGAACAGAAAACCGGGTTCAACGGTCTTGTGGATACTTCCAACTTCGATTGGGGTAGT 780
Query 780 TTTGCCGGTAATGTTGAGCATAATAA---CTCGGTACCGGAACTCGGAATGAGTCATGTT 836
||||| || ||||||||||| ||||| ||||||||||||||||||| |||||||||||
Sbjct 781 TTTGCTGGAAATGTTGAGCACAATAATTACTCGGTACCGGAACTCGGACTGAGTCATGTT 840
Query 837 GTTCCTAATCTCGAGTACAACTGTGGCTACC-TGAAGACGGAGGAGGAAGTCGAGAGCAG 895
|||||||||||||||||||| ||| |||||| | |||||||||||||||||||||||||
Sbjct 841 GTTCCTAATCTCGAGTACAATTGTAGCTACCCT-AAGACGGAGGAGGAAGTCGAGAGCAT 899
Query 896 TCACGGGTTTAATAACTCGGGCGAGTTAGCTCAAAAGGGTTATGGTGTTGACTCG-T--- 951
|||||||||||| |||||||||||||| ||||||||||||||||||||||||||| |
Sbjct 900 TCACGGGTTTAACAACTCGGGCGAGTTGGCTCAAAAGGGTTATGGTGTTGACTCGGTCGG 959
Query 952 -TT-GGGTATTCGGGGCAAGTTGGTGGGTTTGGGTTTATGTGATGATGAAATGCTGACGC 1009
|| |||||||||||||||||||||||||| ||||||||||||||||| |||||||||||
Sbjct 960 GTTTGGGTATTCGGGGCAAGTTGGTGGGTTCGGGTTTATGTGATGATGCAATGCTGACGC 1019
Query 1010 AATAAAAATAAGTCGTTAATTTTTGTCCCGTGGCAAATCTTATATGTATTTGAATTTCAA 1069
| ||||||||||||||||||||||||||||||||||||||||| ||||||| |||||||
Sbjct 1020 AGTAAAAATAAGTCGTTAATTTTTGTCCCGTGGCAAATCTTAT--GTATTTGGATTTCAA 1077
Query 1070 TTCTTTTGGGTTAAGAGGGAGACTCATAGATTTAGAT---GTAGATTTGTAATCTTTCAT 1126
|||||||| ||| ||||| ||| ||||||||||| || ||||||||||||||| ||||
Sbjct 1078 TTCTTTTGTGTTTAGAGGCAGATTCATAGATTTAAATTTAGTAGATTTGTAATCTATCAT 1137
Query 1127 GCATAGAAAATTTGACGAATAGATTTCGTAACTTTAT-TTTGTTGCTGTTTGGTTA-TCT 1184
|| ||||||||||||||||||||||| |||||||| | ||||||| | | | ||| |||
Sbjct 1138 GCCTAGAAAATTTGACGAATAGATTTTGTAACTTT-TGTTTGTTG-T-T--G-TTAATCT 1191
Query 1185 TT-GTATTGGTATAAATTTAGTGGATTGAAATTGCATATTG 1224
|| ||||||||| |||||||||||||||||||||||||||
Sbjct 1192 TTTGTATTGGTAGGAATTTAGTGGATTGAAATTGCATATTG 1232
> Ahg478996 jgi|Araly1|478996|fgenesh2_kg.3__1697__AT3G15500.1
Length=1248
Score = 601 bits (325), Expect = 5e-171
Identities = 486/564 (86%), Gaps = 9/564 (2%)
Strand=Plus/Plus
Query 34 aaaaTATGGGTATCCAAGAAAC-TGACCCGTTAACGCAATTGAGTTTACCACCGGGTTTC 92
|||| |||||| |||||| | | |||||| ||| | |||||||| ||||||||||||||
Sbjct 115 AAAA-ATGGGTCTCCAAG-AGCTTGACCCCTTAGCCCAATTGAGCTTACCACCGGGTTTT 172
Query 93 CGATTTTACCCGACCGATGAAGAGCTTATGGTTCAATATCTCTGTAGAAAAGCAGCTGGT 152
|||||||||||||| || |||||||| |||||| ||||||||||||||||||| || |||
Sbjct 173 CGATTTTACCCGACGGACGAAGAGCTGATGGTTGAATATCTCTGTAGAAAAGCCGCCGGT 232
Query 153 TACGATTTCTCTCTTCAGCTCATCGCCGAAATAGATCTTTACAAATTCGATCCATGGGTT 212
| || |||||||| |||||||| || ||||| ||||| ||||| || ||||||||||||
Sbjct 233 CATGACTTCTCTCTCCAGCTCATAGCTGAAATCGATCTCTACAAGTTTGATCCATGGGTT 292
Query 213 TTACCAAATAAAGCATTATTTGGAGAAAAAGAATGGTAtttttttAGTCCTAGGGATAGA 272
||||||| |||||| ||||| || |||||||||||||||||||| || || ||||||||
Sbjct 293 TTACCAAGTAAAGCGTTATTCGGTGAAAAAGAATGGTATTTTTTCAGCCCAAGGGATAGG 352
Query 273 AAATATCCAAACGGGTCAAGACCTAACCGGGTTGCCGGATCGGGTTATTGGAAAGCTACG 332
|| ||||| |||||||| |||||||| ||||||||||||||||||||||||||||| ||
Sbjct 353 AAGTATCCGAACGGGTCGAGACCTAATCGGGTTGCCGGATCGGGTTATTGGAAAGCCACC 412
Query 333 GGTACGGATAAAATAATCTCGACGGAAGGACA-AAGAGTTGGTATTAAAAAAGCTTTGGT 391
|||||||||||| | ||||||||||| ||| | |||||||||||| || ||||| || ||
Sbjct 413 GGTACGGATAAAGTTATCTCGACGGAGGGA-AGAAGAGTTGGTATCAAGAAAGCATTAGT 471
Query 392 GTTTTACATCGGAAAAGCTCCTAAAGGTACTAAAACCAATTGGATCATGCATGAGTATCG 451
||||||||| |||||||| || ||||| || |||||||||||||| ||||||||||| ||
Sbjct 472 GTTTTACATTGGAAAAGCACCGAAAGGAACCAAAACCAATTGGATTATGCATGAGTACCG 531
Query 452 TCTCATTGAACCTTCTCGTAGAAACGGAAGCACTAAG-TTGGATGATTGGGTTCTATGTC 510
|||||| ||||| ||||||||||| |||||||| ||| ||| ||||||||||| ||||||
Sbjct 532 TCTCATCGAACCCTCTCGTAGAAATGGAAGCACCAAGCTTG-ATGATTGGGTTTTATGTC 590
Query 511 GAATATACAAGAAGCAATCAAGTGCACAAAAACAAGTTTACGATAATGGAATCG-CGAAT 569
|||||||||| ||||||||||| ||||||||||| | |||| ||||| ||| | ||| |
Sbjct 591 GAATATACAAAAAGCAATCAAGCGCACAAAAACAGGCTTACAATAATCTAAT-GACGAGT 649
Query 570 GCTAGAGAATTCAGCAACAACGGT 593
| | | |||| ||||||||| |||
Sbjct 650 GGTCGTGAATACAGCAACAATGGT 673
> Ahg478997 jgi|Araly1|478997|fgenesh2_kg.3__1698__AT3G15510.1
Length=1558
Score = 122 bits (66), Expect = 5e-27
Identities = 288/391 (74%), Gaps = 32/391 (8%)
Strand=Plus/Plus
Query 90 TTCCGATTTTACCCGACCGATGAAGAGCTTATGGTTCAATATCTCTGTA-GAAAAGCAG- 147
||||| ||| |||| ||||||||||||||| ||||||| || ||| | | ||||| |
Sbjct 187 TTCCGGTTTCACCCAACCGATGAAGAGCTTGTGGTTCATTACCTC-AAACGCAAAGCCGC 245
Query 148 CT-GGTTACGATTTCTCTCT-TCAG-C-TCATCGCCGAAATAGATCTTTACAAATTCGAT 203
|| | | | ||| | || | || | ||||||||||| | ||||| || |||||||||
Sbjct 246 CTCTGCT-C-CTTT-AC-CTGT-AGCCATCATCGCCGAAGTCGATCTCTATAAATTCGAT 300
Query 204 CCATGGG-TTTTACCAAATAAAGCATTATTTGGAGAAAAAGAATGGTAtttttttAGTCC 262
||||||| || || |||||| | ||||||||| |||||||||| || || |||||
Sbjct 301 CCATGGGAACTT-CCCGCTAAAGCGTCGTTTGGAGAACAAGAATGGTACTTCTTCAGTCC 359
Query 263 TAGGGATAGAAAATATCCAAACGG-GTCAAGACCTAACCGGGTTGCCGGATCGGGTTATT 321
| | ||| | || ||||||||||| | ||||||| ||| | | || || || ||||
Sbjct 360 TCGAGATCGGAAGTATCCAAACGGAG-CAAGACCAAACAGAGCGGCAACTTCAGGATATT 418
Query 322 GGAAAGCTACGGGTACGGATAAA---ATA-AT-C-T-CGACGG-AAGGACAAAGAGTTGG 373
||||||| || ||||| |||||| || | | | |||||| || | |||| || ||
Sbjct 419 GGAAAGCGACCGGTACAGATAAACCGGTACTTGCTTCCGACGGTAACCA-AAAG-GTGGG 476
Query 374 TATTAAAAAAGCTTTGGTGTTTTACA-TCGGAAAAGCTCCTAAAGGTAC-T-AAAACCAA 430
| || || || |||| || |||| | || ||| | || ||||| | | |||| |
Sbjct 477 CGTGAAGAAGGCACTGGTCTTCTACAGT-GGTAAACCACCAAAAGG--CGTGAAAAGTGA 533
Query 431 TTGGATCATGCATGAGTATCGTCTCATTGAA 461
||||||||||||||||||||||||||| |||
Sbjct 534 TTGGATCATGCATGAGTATCGTCTCATCGAA 564
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 47844260835
Database: halleri_transcript_ahg.fa
Posted date: Sep 25, 2014 2:02 AM
Number of letters in database: 38,939,717
Number of sequences in database: 32,672
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5