BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: halleri_transcript_ahg.fa
32,672 sequences; 38,939,717 total letters
Query= AT1G52900.1
Length=600
Score E
Sequences producing significant alignments: (Bits) Value
Ahg914467 jgi|Araly1|914467|Al_scaffold_0001_4721 977 0.0
> Ahg914467 jgi|Araly1|914467|Al_scaffold_0001_4721
Length=588
Score = 977 bits (529), Expect = 0.0
Identities = 565/583 (97%), Gaps = 0/583 (0%)
Strand=Plus/Plus
Query 1 ATGATCTCTAGGGTTTTCAACTTCATGAAACAATCCGAAACAGTTCAGCTAAACAACAAA 60
|||||||||||||||||||||||||||||||||||| |||| | ||||||||||||||||
Sbjct 1 ATGATCTCTAGGGTTTTCAACTTCATGAAACAATCCAAAACCGCTCAGCTAAACAACAAA 60
Query 61 CTATTTCTCGATCTCCTCTCTTCCTCGTCATCGGCCAAACCCAAAATTTTGCACGACGTG 120
|||||||||||||| ||||||||||| |||||||||||||| ||| ||||||| ||||||
Sbjct 61 CTATTTCTCGATCTTCTCTCTTCCTCATCATCGGCCAAACCTAAAGTTTTGCATGACGTG 120
Query 121 TTCATCAACCACAGAGGATCCGACACAAAGAGAAACATCGCAACATTGCTTTATGACAAT 180
||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||
Sbjct 121 TTCATCAACCACAGAGGATCCGACACAAAGAGAAACATCGCAACATTGCTTTACGACAAC 180
Query 181 CTCAAATCTCGTAACTTACGTCCATTCTTGGATTCCAAGAACATGAAGCCCGGAGATAAG 240
||||||| ||||||||||||||||||| |||||| |||||||||||||||||||||||||
Sbjct 181 CTCAAATATCGTAACTTACGTCCATTCCTGGATTGCAAGAACATGAAGCCCGGAGATAAG 240
Query 241 CTTTTTGATCATATCAACAACGCGATTCTCACTTCTAAAGTCGCTGTAACGGTTTTTTCT 300
||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||
Sbjct 241 CTTTTTGATCATATCAACAGCGCGATTCTCACTTCTAAAGTCGCTGTAACGGTTTTTTCT 300
Query 301 CCTAACTACTGCGATTCATATTTCTGTCTGCACGAGCTTGCTCTTATAATGGAGTCCAGA 360
|| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 301 CCCAACTACTGCGATTCATATTTCTGTCTGCACGAGCTTGCTCTTATAATGGAGTCCAGG 360
Query 361 AAAAGGGTCATACCGATATTCTGCGACATCAAACCTTCACAACTCGATGTTATGATCGAG 420
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 361 AAAAGGGTCATACCGATATTCTGCGACATCAAACCTTCACAACTCGATGTTATGATCGAG 420
Query 421 AGGGTGACATGTTCTGATGATGAAATCCAAAGGTTTAGATGGGCCCTTCAAGAAGCTAAA 480
|||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||
Sbjct 421 AGGGTGACATGTTCTGATGATGAAATCCAAAGGTTTAGATGGGCTCTTCAAGAAGCTAAA 480
Query 481 GATATCGTTGGACTCACGTTTGATTCCTACAAAGGGAATTTATCGGAGGTTGTTACAGTT 540
||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||
Sbjct 481 GATATCGTTGGACTCACGTTTGATTCCTACAAAGGGAATTTATCGGAGGTTGTTACAATT 540
Query 541 GCATCGGATGTTATCGTCGAGAGATTGGTCGAGTTAGAGGCTA 583
|||||||||||||||||||||||||||||||||||||||||||
Sbjct 541 GCATCGGATGTTATCGTCGAGAGATTGGTCGAGTTAGAGGCTA 583
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 21977619264
Database: halleri_transcript_ahg.fa
Posted date: Sep 25, 2014 2:02 AM
Number of letters in database: 38,939,717
Number of sequences in database: 32,672
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5