BLASTN 2.2.26+ Reference: Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000), "A greedy algorithm for aligning DNA sequences", J Comput Biol 2000; 7(1-2):203-14. Database: halleri_transcript_ahg.fa 32,672 sequences; 38,939,717 total letters Query= AT1G52910.1 Length=780 Score E Sequences producing significant alignments: (Bits) Value Ahg474415 jgi|Araly1|474415|fgenesh2_kg.1__4369__AT1G52910.1 996 0.0 > Ahg474415 jgi|Araly1|474415|fgenesh2_kg.1__4369__AT1G52910.1 Length=696 Score = 996 bits (539), Expect = 0.0 Identities = 658/711 (93%), Gaps = 26/711 (4%) Strand=Plus/Plus Query 7 CTTCGAGGGAAAGAG--A-AAG-ATCACAAGAAAAGCTCTCTCAGAATAA--T-CGCAAT 59 ||||||||||||||| | ||| || |||||||||||||||| |||| || | | |||| Sbjct 1 CTTCGAGGGAAAGAGAAAGAAGAATAACAAGAAAAGCTCTCTGAGAACAATCTCCTCAAT 60 Query 60 GGCTTCAAAGCTCGTGATCATCATTGTGTTCATTCTAGATCTCATTGCTGTTGGATTAGC 119 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct 61 GGCTTCAAAGCTCGTGATCATCATTGTGTTCATTCTAGATCTCATTGCTGTTGGATTAGC 120 Query 120 CATTGCTGCCGAACAAAGAAGAAGTGTCGGTAAGGTTGTTCCGGA-TGGTGAGAAGGAAT 178 |||||| ||||||||| |||||||||||||||||||||||||||| | ||||||| || Sbjct 121 CATTGCCGCCGAACAACGAAGAAGTGTCGGTAAGGTTGTTCCGGACAAG-GAGAAGG-AT 178 Query 179 T-TGAGCATTGTGAGTATGGCTCAGACATAGCTACAAGTTATGGAGCTGGTGCATTTGTG 237 | |||| |||||||||||||||| ||||||||||||||||||||||||||||| |||||| Sbjct 179 TATGAGTATTGTGAGTATGGCTCTGACATAGCTACAAGTTATGGAGCTGGTGCCTTTGTG 238 Query 238 CTTCTCTTCATTAGTCAAGTCATTATTATGGTGGCTAGTCGGTGTTTCTGCTGCGGCAAA 297 |||||||||| ||||||||||||||||||||||||||| ||||||||||| ||||||||| Sbjct 239 CTTCTCTTCACTAGTCAAGTCATTATTATGGTGGCTAGCCGGTGTTTCTGTTGCGGCAAA 298 Query 298 GCTCTTAAACCCGGTGGTTCAAGAGCTTGTGGCATTATGCTCTTCCTTATTTGCTGGGTG 357 |||||||| |||||||||||||||||||||| ||||||||||||||| |||||||||||| Sbjct 299 GCTCTTAACCCCGGTGGTTCAAGAGCTTGTGCCATTATGCTCTTCCTCATTTGCTGGGTG 358 Query 358 TTTTTCTTGATTGCTGAGGTATGTTTGCTCGCGGGATCAATCAGAAACGCGTACCACACT 417 |||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||| Sbjct 359 TTTTTCTTGATTGCTGAGATATGTTTGCTCGCGGGATCAATCAGAAACGCGTACCACACT 418 Query 418 ACGTACAGAAGGATGTGGAACATCGAAAACCCTCCTAGCTGTGAAGTGATCCGTAAAGGA 477 | ||||||||||||||||||| ||||| ||||||| |||||||||||||||||||||||| Sbjct 419 AAGTACAGAAGGATGTGGAACGTCGAAGACCCTCCAAGCTGTGAAGTGATCCGTAAAGGA 478 Query 478 GTGTTTGCTGCTGGTGCTTCCTTTGCTCTCTTCACTGCTATTGTCTCTCAGTTCTATTAC 537 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct 479 GTGTTTGCTGCTGGTGCTTCCTTTGCTCTCTTCACTGCTATTGTCTCTCAGTTCTATTAC 538 Query 538 ATCTCCTATTCTCGTGCCCGAG-ACGGTTACCA-AACCCCACATTACTAGTGAGTAGTGA 595 |||||||||||||||||| || | ||||||| ||||| ||||||||||||||| | | Sbjct 539 GTCTCCTATTCTCGTGCCC-AGGATGGTTACCGCAACCC-ACATTACTAGTGAGT-G--A 593 Query 596 GATCCAGAACAAGAAAAGCTAAACCCTGAATGAGTTTGTCCATTTATCCACTCACTGATC 655 |||||||||||||||||||||||||||||| ||||||||||| | ||||||||| Sbjct 594 GATCCAGAACAAGAAAAGCTAAACCCTGAACGAGTTTGTCCA-----C---TCACTGATC 645 Query 656 AATAGGATATTAAAATTTGATGATGTTAGTCATTTTGCTTCTTGCTTGTAT 706 |||||||||||||||||||||||||||||| |||||||||||||||||||| Sbjct 646 AATAGGATATTAAAATTTGATGATGTTAGTGATTTTGCTTCTTGCTTGTAT 696 Lambda K H 1.33 0.621 1.12 Gapped Lambda K H 1.28 0.460 0.850 Effective search space used: 28782802335 Database: halleri_transcript_ahg.fa Posted date: Sep 25, 2014 2:02 AM Number of letters in database: 38,939,717 Number of sequences in database: 32,672 Matrix: blastn matrix 1 -2 Gap Penalties: Existence: 0, Extension: 2.5