BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: halleri_transcript_ahg.fa
32,672 sequences; 38,939,717 total letters
Query= AT1G52910.1
Length=780
Score E
Sequences producing significant alignments: (Bits) Value
Ahg474415 jgi|Araly1|474415|fgenesh2_kg.1__4369__AT1G52910.1 996 0.0
> Ahg474415 jgi|Araly1|474415|fgenesh2_kg.1__4369__AT1G52910.1
Length=696
Score = 996 bits (539), Expect = 0.0
Identities = 658/711 (93%), Gaps = 26/711 (4%)
Strand=Plus/Plus
Query 7 CTTCGAGGGAAAGAG--A-AAG-ATCACAAGAAAAGCTCTCTCAGAATAA--T-CGCAAT 59
||||||||||||||| | ||| || |||||||||||||||| |||| || | | ||||
Sbjct 1 CTTCGAGGGAAAGAGAAAGAAGAATAACAAGAAAAGCTCTCTGAGAACAATCTCCTCAAT 60
Query 60 GGCTTCAAAGCTCGTGATCATCATTGTGTTCATTCTAGATCTCATTGCTGTTGGATTAGC 119
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 61 GGCTTCAAAGCTCGTGATCATCATTGTGTTCATTCTAGATCTCATTGCTGTTGGATTAGC 120
Query 120 CATTGCTGCCGAACAAAGAAGAAGTGTCGGTAAGGTTGTTCCGGA-TGGTGAGAAGGAAT 178
|||||| ||||||||| |||||||||||||||||||||||||||| | ||||||| ||
Sbjct 121 CATTGCCGCCGAACAACGAAGAAGTGTCGGTAAGGTTGTTCCGGACAAG-GAGAAGG-AT 178
Query 179 T-TGAGCATTGTGAGTATGGCTCAGACATAGCTACAAGTTATGGAGCTGGTGCATTTGTG 237
| |||| |||||||||||||||| ||||||||||||||||||||||||||||| ||||||
Sbjct 179 TATGAGTATTGTGAGTATGGCTCTGACATAGCTACAAGTTATGGAGCTGGTGCCTTTGTG 238
Query 238 CTTCTCTTCATTAGTCAAGTCATTATTATGGTGGCTAGTCGGTGTTTCTGCTGCGGCAAA 297
|||||||||| ||||||||||||||||||||||||||| ||||||||||| |||||||||
Sbjct 239 CTTCTCTTCACTAGTCAAGTCATTATTATGGTGGCTAGCCGGTGTTTCTGTTGCGGCAAA 298
Query 298 GCTCTTAAACCCGGTGGTTCAAGAGCTTGTGGCATTATGCTCTTCCTTATTTGCTGGGTG 357
|||||||| |||||||||||||||||||||| ||||||||||||||| ||||||||||||
Sbjct 299 GCTCTTAACCCCGGTGGTTCAAGAGCTTGTGCCATTATGCTCTTCCTCATTTGCTGGGTG 358
Query 358 TTTTTCTTGATTGCTGAGGTATGTTTGCTCGCGGGATCAATCAGAAACGCGTACCACACT 417
|||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||
Sbjct 359 TTTTTCTTGATTGCTGAGATATGTTTGCTCGCGGGATCAATCAGAAACGCGTACCACACT 418
Query 418 ACGTACAGAAGGATGTGGAACATCGAAAACCCTCCTAGCTGTGAAGTGATCCGTAAAGGA 477
| ||||||||||||||||||| ||||| ||||||| ||||||||||||||||||||||||
Sbjct 419 AAGTACAGAAGGATGTGGAACGTCGAAGACCCTCCAAGCTGTGAAGTGATCCGTAAAGGA 478
Query 478 GTGTTTGCTGCTGGTGCTTCCTTTGCTCTCTTCACTGCTATTGTCTCTCAGTTCTATTAC 537
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 479 GTGTTTGCTGCTGGTGCTTCCTTTGCTCTCTTCACTGCTATTGTCTCTCAGTTCTATTAC 538
Query 538 ATCTCCTATTCTCGTGCCCGAG-ACGGTTACCA-AACCCCACATTACTAGTGAGTAGTGA 595
|||||||||||||||||| || | ||||||| ||||| ||||||||||||||| | |
Sbjct 539 GTCTCCTATTCTCGTGCCC-AGGATGGTTACCGCAACCC-ACATTACTAGTGAGT-G--A 593
Query 596 GATCCAGAACAAGAAAAGCTAAACCCTGAATGAGTTTGTCCATTTATCCACTCACTGATC 655
|||||||||||||||||||||||||||||| ||||||||||| | |||||||||
Sbjct 594 GATCCAGAACAAGAAAAGCTAAACCCTGAACGAGTTTGTCCA-----C---TCACTGATC 645
Query 656 AATAGGATATTAAAATTTGATGATGTTAGTCATTTTGCTTCTTGCTTGTAT 706
|||||||||||||||||||||||||||||| ||||||||||||||||||||
Sbjct 646 AATAGGATATTAAAATTTGATGATGTTAGTGATTTTGCTTCTTGCTTGTAT 696
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 28782802335
Database: halleri_transcript_ahg.fa
Posted date: Sep 25, 2014 2:02 AM
Number of letters in database: 38,939,717
Number of sequences in database: 32,672
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5