BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: halleri_transcript_ahg.fa
32,672 sequences; 38,939,717 total letters
Query= AT1G52920.1
Length=1322
Score E
Sequences producing significant alignments: (Bits) Value
Ahg914471 jgi|Araly1|914471|Al_scaffold_0001_4725 1818 0.0
> Ahg914471 jgi|Araly1|914471|Al_scaffold_0001_4725
Length=1233
Score = 1818 bits (984), Expect = 0.0
Identities = 1152/1235 (93%), Gaps = 4/1235 (0%)
Strand=Plus/Plus
Query 5 ATGGGAGAACGGTTTTTCCGAAATGAGATGCCGGAGTTTGTACCGGAAGATTTATCCGGA 64
||||||||||| |||||||| |||||||||||||| |||||||||||||| | |||||
Sbjct 1 ATGGGAGAACGTTTTTTCCGTAATGAGATGCCGGAATTTGTACCGGAAGAATCCGCCGGA 60
Query 65 GAAGAAGAAACTGTTACCGAATGTAAAGATTCGTTGACGAAACTGCTATCACTTCCGTAC 124
||||||||||||||||| | | ||||||||||||||| ||||||||||||||||||||||
Sbjct 61 GAAGAAGAAACTGTTACTGCAGGTAAAGATTCGTTGAGGAAACTGCTATCACTTCCGTAC 120
Query 125 AAATCATTCTCAGAGAAGCTTCACAGATATGCTCTAAGCATCAAAGATAAAGTAGTCTGG 184
||||||||||| ||||||||||| || |||||| ||||| | |||||||||||||| |||
Sbjct 121 AAATCATTCTCCGAGAAGCTTCAGAGTTATGCTTTAAGCCTTAAAGATAAAGTAGTGTGG 180
Query 185 GAGACATGGGAACGATCTGGAAAACGTGTTCGAGATTATAACTTGTATACTGGAGTTCTT 244
|||||||||||| |||||||||||||||||||||||||||| ||||||||||||||||||
Sbjct 181 GAGACATGGGAAAGATCTGGAAAACGTGTTCGAGATTATAAATTGTATACTGGAGTTCTT 240
Query 245 GGGACAGCTTATCTCTTGTTCAAATCTTATCAGGTTACTAGAAATGAAGATGATCTTAAG 304
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 241 GGGACAGCTTATCTCTTGTTCAAATCTTATCAGGTTACTAGAAATGAAGATGATCTTAAG 300
Query 305 CTATGCTTAGAGAATGTTGAAGCTTGTGATGTAGCTTCAAGAGATTCTGAGCGAGTGACA 364
||||||||||||| |||||| |||||||||||||||||||||||||||||||||||||||
Sbjct 301 CTATGCTTAGAGATTGTTGAGGCTTGTGATGTAGCTTCAAGAGATTCTGAGCGAGTGACA 360
Query 365 TTTATATGTGG-CTATGCTGGTGTATGTGCTCTTGGTGCTGTTGCAGCGAAGTGTTTAGG 423
||||||||||| | |||||||||||||||||||||||||||||||||| ||| ||| ||
Sbjct 361 TTTATATGTGGTC-ATGCTGGTGTATGTGCTCTTGGTGCTGTTGCAGCCAAGCATTTGGG 419
Query 424 TGATGACCAGTTATATGATCGTTACTTAGCCCGTTTCCGAGGGATTAGGCTTCCTAGTGA 483
||| ||||||| ||||||||||||||||||||||||||||||||||||||||||||
Sbjct 420 TGACAACCAGTTGCGGGATCGTTACTTAGCCCGTTTCCGAGGGATTAGGCTTCCTAGTGA 479
Query 484 CTTGCCATATGAGTTGCTATATGGTAGAGCAGGATACTTGTGGGCGTGTTTGTTCTTGAA 543
||||||||| |||||| ||||||||||||||||||||||||||||||| |||||||||||
Sbjct 480 CTTGCCATACGAGTTGTTATATGGTAGAGCAGGATACTTGTGGGCGTGCTTGTTCTTGAA 539
Query 544 TAAGCATATTGGTCAGGAGAGTATATCATCTGAACGAATGAGATCAGTGGTTGAGGAAAT 603
||||||||| || |||| ||| ||||||||||| |||||||||||||||||||||||||
Sbjct 540 TAAGCATATCGGGGAGGATAGTGTATCATCTGAAAGAATGAGATCAGTGGTTGAGGAAAT 599
Query 604 CTTCAGGGCAGGAAGACAACTCGGGAATAAAGGAACTTGTCCATTGATGTATGAGTGGCA 663
||| || ||||||||||||| ||||||| || |||||| || |||||||||||||||||
Sbjct 600 CTTTAGATCAGGAAGACAACTTGGGAATAGAGAAACTTGCCCGTTGATGTATGAGTGGCA 659
Query 664 CGGGAAGAGGTACTGGGGGGCTGCACACGGTTTAGCTGGGATCATGAATGTTTTGATGCA 723
||| |||||||||||||||||||||||||||||||| |||||||||||||||||||||||
Sbjct 660 CGGTAAGAGGTACTGGGGGGCTGCACACGGTTTAGCCGGGATCATGAATGTTTTGATGCA 719
Query 724 TACGGAACTTGAACCAGATGAAATCAAAGATGTCAAAGGTACACTAAGCTATATGATACA 783
|| ||||||||||||||||||||||||||||||||||||||| || || |||||||||||
Sbjct 720 TATGGAACTTGAACCAGATGAAATCAAAGATGTCAAAGGTACGCTGAGTTATATGATACA 779
Query 784 AAACCGTTTTCCTAGCGGGAATTACCTATCTAGTGAAGGAAGCAAATCAGATCGCCTTGT 843
||||||||||||||||||||||||||||||||| ||||||||| |||| |||||||||||
Sbjct 780 AAACCGTTTTCCTAGCGGGAATTACCTATCTAGCGAAGGAAGCGAATCGGATCGCCTTGT 839
Query 844 TCACTGGTGTCACGGTGCTCCTGGTGTTGCTCTCACACTTGTAAAGGCAGCTCAGGTTTA 903
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 840 TCACTGGTGTCACGGTGCTCCTGGTGTTGCTCTCACACTTGTAAAGGCAGCTCAGGTTTT 899
Query 904 TAACACTAAGGAATTTGTAGAGGCAGCAATGGAGGCAGGAGAAGTTGTGTGGAGCCGTGG 963
||| || |||||||||||||||||||||||||||||||||||||||||||||| ||||||
Sbjct 900 TAAGACAAAGGAATTTGTAGAGGCAGCAATGGAGGCAGGAGAAGTTGTGTGGAACCGTGG 959
Query 964 ATTGCTTAAACGAGTAGGAATCTGTCACGGTATCAGCGGAAACACATACGTGTTTCTTTC 1023
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 960 ATTGCTTAAACGAGTAGGAATCTGTCACGGTATCAGCGGAAACACATACGTGTTTCTTTC 1019
Query 1024 TCTATACCGGTTAACAAGAAACCCA-AAGTATTTGTACCGCGCTAAAGCTTTCGCGTCTT 1082
|||||||||||||||| |||| || || |||||||||||||| ||||||||||||||||
Sbjct 1020 TCTATACCGGTTAACAGGAAAAGCAGAA-TATTTGTACCGCGCAAAAGCTTTCGCGTCTT 1078
Query 1083 TCCTACTCGATAAATCAGAGAAGTTAATCTCAGAAGGTCAAATGCATGGAGGAGATAGAC 1142
||||| |||||||||||||||| | |||| ||||||| |||||||||||||||||||||
Sbjct 1079 TCCTATTCGATAAATCAGAGAAACTCATCTTAGAAGGTAAAATGCATGGAGGAGATAGAC 1138
Query 1143 CCTTCTCTCTCTTTGAAGGTATCGGAGGAATGGCCTACATGTTACTCGACATGAATGATC 1202
| |||||||| |||||||| || |||||||||||||||||||| ||||||||||| ||||
Sbjct 1139 CATTCTCTCTATTTGAAGGCATTGGAGGAATGGCCTACATGTTTCTCGACATGAACGATC 1198
Query 1203 CAACACAAGCTCTGTTTCCAGGTTATGAACTCTAA 1237
||||||||||||| |||||||||||||||||||||
Sbjct 1199 CAACACAAGCTCTATTTCCAGGTTATGAACTCTAA 1233
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 49445423349
Database: halleri_transcript_ahg.fa
Posted date: Sep 25, 2014 2:02 AM
Number of letters in database: 38,939,717
Number of sequences in database: 32,672
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5