BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: halleri_transcript_ahg.fa
32,672 sequences; 38,939,717 total letters
Query= AT1G52930.1
Length=1114
Score E
Sequences producing significant alignments: (Bits) Value
Ahg474417 jgi|Araly1|474417|fgenesh2_kg.1__4371__AT1G52930.1 1640 0.0
Ahg929350 jgi|Araly1|929350|scaffold_301807.1 922 0.0
> Ahg474417 jgi|Araly1|474417|fgenesh2_kg.1__4371__AT1G52930.1
Length=1076
Score = 1640 bits (888), Expect = 0.0
Identities = 1027/1092 (94%), Gaps = 18/1092 (2%)
Strand=Plus/Plus
Query 13 aaaaacaaaaaaaTGGGGAGGAAGCGGAAGCACAGTGAGACGGAAGCTCCGGCGCCGGTG 72
||||| ||||||||||||| ||||||||||||||||||||||||||||||||||||||||
Sbjct 1 AAAAAAAAAAAAATGGGGAAGAAGCGGAAGCACAGTGAGACGGAAGCTCCGGCGCCGGTG 60
Query 73 AAAAAGAGCGATGAGCCTGCTCCGGATAGACCCAAAAGGACTCTATTGGGATGGAAAGAT 132
||||||| ||| ||| |||||||||| ||||||||||||||| |||||||||||||||||
Sbjct 61 AAAAAGAACGACGAGTCTGCTCCGGAGAGACCCAAAAGGACTTTATTGGGATGGAAAGAT 120
Query 133 AAGAGTGAAGGTGAAGCTGAGAAAGCTAAAGCTTTGACTTCATCTGGATTCAAGAACAAA 192
|||||||||||||||||||||||| ||||||||||| ||||||||||||||| ||| |||
Sbjct 121 AAGAGTGAAGGTGAAGCTGAGAAATCTAAAGCTTTGTCTTCATCTGGATTCAGGAATAAA 180
Query 193 GAGAAGGTTTTGGTGACTTGTTCTCGTCGTATCAGTTTCAGGTATCGGAGTTTGATGTTG 252
|||||||||||||| |||||||||||||| || |||||||||||||||||||||||||||
Sbjct 181 GAGAAGGTTTTGGTTACTTGTTCTCGTCGAATTAGTTTCAGGTATCGGAGTTTGATGTTG 240
Query 253 AACATTGTTTCACTTCTACCACACTGTAAGAAAGACAGTAAAGTTGAAGCAAAGAGTAGC 312
||||| ||||||||||| |||||||||||||| || |||||||||||||| |||||||||
Sbjct 241 AACATGGTTTCACTTCTGCCACACTGTAAGAAGGATAGTAAAGTTGAAGCTAAGAGTAGC 300
Query 313 AAAGGCGCGACTTTGAATGAGCTCATTGAGCTTAA-GAATTCTAATTCCTGCTTGTTCTT 371
||||||||||||||||||||||| ||||||||||| | | ||||||||||| ||||| ||
Sbjct 301 AAAGGCGCGACTTTGAATGAGCTTATTGAGCTTAAGGGA-TCTAATTCCTGTTTGTTTTT 359
Query 372 CGAGTGTAGGAAACATAAAGATCTTTACATGTGGATGGTCAAATCCCCTAATGGACCATC 431
|||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||
Sbjct 360 CGAGTGTAGGAAACATAAGGATCTTTACATGTGGATGGTCAAATCCCCTAATGGACCATC 419
Query 432 TGTGAAGTTTTTGGTTAAAGCTGTGCACGCAATGGAAGAGATGAAACTCACTGGAAATCA 491
|||||||||||||||||||||||||||||| ||||||||| |||||||||||||||||||
Sbjct 420 TGTGAAGTTTTTGGTTAAAGCTGTGCACGCGATGGAAGAGCTGAAACTCACTGGAAATCA 479
Query 492 TCTCAAAGGGTCACGTCCACTTTTGACATTCTCATCCAATTTTGATAAAGATGCGCACTG 551
||| ||||| ||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 480 TCTAAAAGGTTCACGTCCACTTTTGACATTCTCATCCAATTTTGATAAAGATGCGCACTG 539
Query 552 GAAACTCTTGAAGGAGATGCTTACTCAGGTCTTCGGAATTCCTAAGGAACACAGGAAATC 611
||||||||||||||||||||||||||||||||| |||||||| |||||||||||||||||
Sbjct 540 GAAACTCTTGAAGGAGATGCTTACTCAGGTCTTTGGAATTCCCAAGGAACACAGGAAATC 599
Query 612 TAAGCCTTACCATGACCATGTATTTGTCTTTTCAATTGTTGATGAGCATATATGGTTCCG 671
||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||
Sbjct 600 TAAGCCTTACCATGACCATGTATTTGTCTTTTCCATTGTTGATGAGCATATATGGTTCCG 659
Query 672 AAATTACCAGATTTCGGTTCCTCACAATGAGTCAGATAAAATTGCAAAAGGTGGCCTGGA 731
||||||||||||||||||||||||||||| |||||||||||||||||||| ||||||||
Sbjct 660 GAATTACCAGATTTCGGTTCCTCACAATGAATCAGATAAAATTGCAAAAGGCGGCCTGGA 719
Query 732 TAAAATGACCCTTATCGAGGTTGGTCCAAGGTTTTGTCTGAATCCAATCAAGATATTCGC 791
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 720 TAAAATGACCCTTATCGAGGTTGGTCCAAGGTTTTGTCTGAATCCAATCAAGATATTCG- 778
Query 792 G-GGCAGCTTTGGAGGTCCTACTCTTTATGAGAACCCGTTATACGTATCTCCAAACCAGA 850
| ||||||||||||||||| |||||||| |||||||||||||||||||||||||||||||
Sbjct 779 GAGGCAGCTTTGGAGGTCCAACTCTTTACGAGAACCCGTTATACGTATCTCCAAACCAGA 838
Query 851 TTCGAGCATTGGAGAAGAGAAATAAAGCTGGGAAATTTGCTAAGAAGATCAAGGCGAAGA 910
|||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 839 TTCGAGCACTGGAGAAGAGAAATAAAGCTGGGAAATTTGCTAAGAAGATCAAGGCGAAGA 898
Query 911 CGAGGAAAAAGATGCATGAGCTCTCAAACCCGTTGGAGCCTGATGAGTTTGCAGATATGT 970
| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 899 CTAGGAAAAAGATGCATGAGCTCTCAAACCCGTTGGAGCCTGATGAGTTTGCAGATATGT 958
Query 971 GGAAAGATGATGAATGATCAGAGTTCAGGAAAATTGTATCACTTCACTTTGTCTTACTGT 1030
|||||||||||||||||||||| |||||||||||||||||| ||||| || | || | |
Sbjct 959 GGAAAGATGATGAATGATCAGAATTCAGGAAAATTGTATCAGTTCACATT-T-TT--T-T 1013
Query 1031 TATTTTAGTTTTGTCTTGTTTTCGCTCACTATCAAACATAAACAAAGTTTTGTCTTGCAA 1090
| | || || ||| ||| |||||| |||||||| || ||| ||||||||||||||
Sbjct 1014 T-T----GTCTTA-CTT-TTT-CGCTCAGGATCAAACAGAATCAA-GTTTTGTCTTGCAA 1064
Query 1091 TGATATGTTTCT 1102
||||||||||||
Sbjct 1065 TGATATGTTTCT 1076
> Ahg929350 jgi|Araly1|929350|scaffold_301807.1
Length=995
Score = 922 bits (499), Expect = 0.0
Identities = 821/975 (84%), Gaps = 27/975 (3%)
Strand=Plus/Plus
Query 17 acaaaaaaaTGGGGAGGAAGCGGAAGCACAGTGAGACGGAAGCTCCGGCGCCGGTGAAAA 76
|||||||||||||||||||| | |||||||| ||||| | || |||| |||| |||
Sbjct 20 ACAAAAAAATGGGGAGGAAGAGAAAGCACAGCGAGACTGTTGCGGCGGCACCGGCGAAGC 79
Query 77 AGAGCGATGAGCCTGCTCCGGATAGACCCAAAAGGACTCTATTGGGATGGAAAGATAAGA 136
||| |||| |||||||||| ||||| ||||||||||| ||||| |||||||||||||
Sbjct 80 AGAACGAT---TCTGCTCCGGAGAGACCTAAAAGGACTCTTTTGGGTTGGAAAGATAAGA 136
Query 137 GTGAAGGTGAAGCTGAGAAAGCTAAAGCTTTGACTTCATCTGGATTCAAGAACAAAGAGA 196
||| || |||||| | ||||| | || | |||| ||||| ||| |||||||
Sbjct 137 ACGAA---GATGCTGAGGACTCTAAA-C-----CTACGTCTGTATTCAGGAATAAAGAGA 187
Query 197 AGGTTTTGGTGACTTGTTCTCGTCGTATCAGTTTCAGGTATCGG-AGTTTGATGTTGAAC 255
||||| | || |||||||| ||||| |||||||||||||||||| | |||||||||||||
Sbjct 188 AGGTTCTCGTTACTTGTTCCCGTCGCATCAGTTTCAGGTATCGGCA-TTTGATGTTGAAC 246
Query 256 ATTGTTTCACTTCTACCACACTGTAAGAAAGACAGTAAAGTTGAAGCAAAGAGTAGCAAA 315
|| || |||||| |||| ||||||||||| || ||||| || ||||| ||||| || | |
Sbjct 247 ATGGTGTCACTTTTACCTCACTGTAAGAAGGATAGTAAGGTGGAAGCTAAGAGCAGTAGA 306
Query 316 GGCGCGACT-TTGAATGAGCTCATTGAGCTTAAGAATTCTAATTCCTGCTTGTTCTTCGA 374
|| || ||| || ||||||||||| ||||||||| ||| ||| || ||||| |||||
Sbjct 307 GGTGCCACTCTT-AATGAGCTCATCGAGCTTAAGGGCTCTTCTTCTTGTTTGTTTTTCGA 365
Query 375 GTGTAGGAAACATAAAGATCTTTACATGTGGATGGTCAAATCCCCTAATGGACCATCTGT 434
||||||||| || |||||||||||||||||||||||||| |||||| ||| || || ||
Sbjct 366 GTGTAGGAAGCACAAAGATCTTTACATGTGGATGGTCAAGTCCCCTGGTGGTCCTTCCGT 425
Query 435 GAAGTTTTTGGTTAAAGCTGTGCACGCAATGGAAGAGATGAAACTCACTGGAAATCATCT 494
||||| |||||||| ||||| ||| ||||||| ||| ||||||||||||||||||||||
Sbjct 426 TAAGTTCTTGGTTAATGCTGTTCACACAATGGAGGAGCTGAAACTCACTGGAAATCATCT 485
Query 495 CAAAGGGTCACGTCCACTTTTGACATTCTCATCCAATTTTGATAAAGATGCGCACTGGAA 554
||||| ||||| ||||||||||||||||||||||||||||| |||||||| ||||||||
Sbjct 486 GAAAGGTTCACGCCCACTTTTGACATTCTCATCCAATTTTGAAAAAGATGCACACTGGAA 545
Query 555 ACT-CTTGAAGGAGATGCTTA-CTCAGGTCTTCGGAATTCCTAAGGAACACAGGAAATCT 612
||| ||| ||| ||||| ||| ||||| | || |||||||| ||| ||| ||||| |||
Sbjct 546 ACTTCTTAAAG-AGATG-TTAACTCAGATTTTTGGAATTCCCGAGGGACATAGGAAGTCT 603
Query 613 AAGCCTTACCATGACCATGTATTTGTCTTT-TCAATTGTTGATGAGCATATATGGTTCCG 671
|| ||||||||||||||||| ||||| ||| || ||||||||||| ||||| ||||||||
Sbjct 604 AAACCTTACCATGACCATGTGTTTGT-TTTCTCCATTGTTGATGACCATATTTGGTTCCG 662
Query 672 AAATTACCAGATTTCGGTTCCTCACAATGAGTCAGATAAAATTGCAAAAGGTGGCCTGGA 731
||||||||||| ||||| ||||| || |||||||| || |||||| ||| | |||||
Sbjct 663 TAATTACCAGATATCGGTACCTCATAACGAGTCAGACAAGATTGCACGAGGCGATCTGGA 722
Query 732 TAAAATGACCCTTATCGAGGTTGGTCCAAGGTTTTGTCTGAATCCAATCAAGATATTCGC 791
||||||||| ||||| ||||||||||||||||||||| | |||||||| |||||||| |
Sbjct 723 TAAAATGACTCTTATTGAGGTTGGTCCAAGGTTTTGTTTAAATCCAATTAAGATATTTG- 781
Query 792 G-GGCAGCTTTGGAGGTCCTACTCTTTATGAGAACCCGTTATACGTATCTCCAAACCAGA 850
| ||||||||||||||||| || ||||| |||||||| || || ||||||||||||||||
Sbjct 782 GAGGCAGCTTTGGAGGTCCAACGCTTTACGAGAACCCATTCTATGTATCTCCAAACCAGA 841
Query 851 TTCGAGCATTGGAGAAGAGAAATAAAGCTGGGAAATTTGCTAAGAAGATCAAGGCGAAGA 910
||||||| |||||||| ||||||||||||||||||||||||||||| ||||||||||| |
Sbjct 842 TTCGAGCTTTGGAGAAAAGAAATAAAGCTGGGAAATTTGCTAAGAAAATCAAGGCGAAAA 901
Query 911 CGAGGA-AAAAGATGCATGAGCTCTCAAACCCGTTGGAGCCTGATGAGTTTGCAGATATG 969
| || | |||| |||||||| ||||||||||| |||||||||||||| ||| |||| |||
Sbjct 902 CAAGAAGAAAA-ATGCATGAACTCTCAAACCCATTGGAGCCTGATGAATTTACAGACATG 960
Query 970 TGGAAAGATGA-TGA 983
||||| ||||| |||
Sbjct 961 TGGAAGGATGAATGA 975
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 41515856613
Database: halleri_transcript_ahg.fa
Posted date: Sep 25, 2014 2:02 AM
Number of letters in database: 38,939,717
Number of sequences in database: 32,672
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5