BLASTN 2.2.26+


Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.



Database: halleri_transcript_ahg.fa
           32,672 sequences; 38,939,717 total letters



Query= AT1G52970.1

Length=450
                                                                      Score     E
Sequences producing significant alignments:                          (Bits)  Value

  Ahg923832 jgi|Araly1|923832|scaffold_105113.1                        651    0.0  


> Ahg923832 jgi|Araly1|923832|scaffold_105113.1
Length=490

 Score =  651 bits (352),  Expect = 0.0
 Identities = 420/452 (93%), Gaps = 7/452 (2%)
 Strand=Plus/Plus

Query  1    ATGGAGAAAGCAATTCTCATAACGTTTCTCATAGCCACCACATCGATGGTTTATCAAACT  60
            |||||||||||||||||||||||||||||||||||||| |  || ||||||||||||| |
Sbjct  24   ATGGAGAAAGCAATTCTCATAACGTTTCTCATAGCCAC-A--TCAATGGTTTATCAAAGT  80

Query  61   ATTGGTCAAGAAGAAGAGATCAGTCCAATATCTCCTGAATCATTGGCATACGAACCCGCT  120
             | | |||||| |||||||||||||||||||||||||||||||| |||||||||||||||
Sbjct  81   CTCGCTCAAGACGAAGAGATCAGTCCAATATCTCCTGAATCATTTGCATACGAACCCGCT  140

Query  121  GCAGCTTACGAGTACGACCACGAACTCCTA-AGCCACATGACGACCCGGCGCATCAAATT  179
            |||||||||||||| |||||||| |||||| | |||||||||||| |  |||||||||||
Sbjct  141  GCAGCTTACGAGTATGACCACGACCTCCTAGA-CCACATGACGACACAACGCATCAAATT  199

Query  180  TCTCCAAGATTGTTCGGATAAAATGAGCTCGAAATGCAATGTTGAGATGACGGAAGGATT  239
            ||| |||||||||||||||||||||||||||||||||   ||||||||||||||||||||
Sbjct  200  TCTTCAAGATTGTTCGGATAAAATGAGCTCGAAATGCGGGGTTGAGATGACGGAAGGATT  259

Query  240  GATCGACGACAAGCCCGTTTCGGAGGATTGTTGTGTGAACTTTTTGAAGATTGGAAGAGA  299
            |||||||||||||||||| |||||| ||||||||||||||||||||||||||||||||||
Sbjct  260  GATCGACGACAAGCCCGTGTCGGAGAATTGTTGTGTGAACTTTTTGAAGATTGGAAGAGA  319

Query  300  ATGTCACGAAGGATTGAT-GACTTTTGTGTTCGCCACTTATGAGCTAAAAGATGTTGCTT  358
             |||||||||||||| || ||||||||| ||||||||||||||||||||||||| |||||
Sbjct  320  TTGTCACGAAGGATT-ATTGACTTTTGTATTCGCCACTTATGAGCTAAAAGATGCTGCTT  378

Query  359  CTGCGATTCTTCCTAGGAGCAAACGGATGTGGAATAAATGTGTTGAGACCACTGCTGCTA  418
            ||| |||||||||||||||||||||||||||||| |||||||||||||||||||||||||
Sbjct  379  CTGAGATTCTTCCTAGGAGCAAACGGATGTGGAACAAATGTGTTGAGACCACTGCTGCTA  438

Query  419  AGATTGGTGCTCCTCTCGCTTTTGAAACTTGA  450
            ||||||||| ||||||||| ||||||||||||
Sbjct  439  AGATTGGTGTTCCTCTCGCATTTGAAACTTGA  470



Lambda     K      H
    1.33    0.621     1.12 

Gapped
Lambda     K      H
    1.28    0.460    0.850 

Effective search space used: 16254280914


  Database: halleri_transcript_ahg.fa
    Posted date:  Sep 25, 2014  2:02 AM
  Number of letters in database: 38,939,717
  Number of sequences in database:  32,672



Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5