BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: halleri_transcript_ahg.fa
32,672 sequences; 38,939,717 total letters
Query= AT1G52980.1
Length=1939
Score E
Sequences producing significant alignments: (Bits) Value
Ahg474419 jgi|Araly1|474419|fgenesh2_kg.1__4373__AT1G52980.1 2660 0.0
> Ahg474419 jgi|Araly1|474419|fgenesh2_kg.1__4373__AT1G52980.1
Length=1743
Score = 2660 bits (1440), Expect = 0.0
Identities = 1646/1747 (94%), Gaps = 8/1747 (0%)
Strand=Plus/Plus
Query 51 AAAAATCAGAGATGGTGAAGAAGGAGAAGAAAGCGAATGTTTCCGGTAAACCAAAGCATT 110
|||| ||||||||||||||||||||||||||| ||||||| ||||| |||||||||||||
Sbjct 1 AAAACTCAGAGATGGTGAAGAAGGAGAAGAAATCGAATGTGTCCGGGAAACCAAAGCATT 60
Query 111 CGCTCGATGCGAATCGTGCTGATGGCAAAAAGAAAACCACCGAAACCCGGT-CCAAATCC 169
||||||||||||||||||| ||||| |||||||||||||||||| || || ||||| ||
Sbjct 61 CGCTCGATGCGAATCGTGCCGATGGGAAAAAGAAAACCACCGAAGGCC-GTACCAAAGCC 119
Query 170 ACAGTTAACCGGCTTAAGATGTACAAGACTAGACCTAAGAGAAAC-GCCGGTGGTAAAAT 228
|||||||| ||||||||||||||||| ||||||||||| |||||| | ||||||||||||
Sbjct 120 ACAGTTAATCGGCTTAAGATGTACAACACTAGACCTAAAAGAAACAG-CGGTGGTAAAAT 178
Query 229 CCTTAGCAACGAGTACCAGTCAAAGGAATTACCCAACTCACGAATCGC-ACCTGATCGAC 287
|||||||||||||||||| || |||||| ||||||||||||||||| | |||||||||||
Sbjct 179 CCTTAGCAACGAGTACCAATCTAAGGAACTACCCAACTCACGAATC-CAACCTGATCGAC 237
Query 288 GATGGTTTGGGAACACTCGTGTTGTGAATCAGAAAGAGCTTGAGTACTTTAGAGAAGAGC 347
||||||||| |||||||||||||||||||||||| |||||||| ||||||||||| ||||
Sbjct 238 GATGGTTTGTGAACACTCGTGTTGTGAATCAGAAGGAGCTTGAATACTTTAGAGACGAGC 297
Query 348 TTCAGA-CTAAGATGTCTAGTAATTACAATGTGATTTTGAAGGAGAGGAAGTTGCCTATG 406
|||| | |||||||||||| || || ||||||||| |||| ||||||||||||||||
Sbjct 298 TTCA-ATCTAAGATGTCTAATACTTTTAATGTGATTGTGAAACCGAGGAAGTTGCCTATG 356
Query 407 TCTCTTTTAACTGATAACAAGAAGCAATCGAGAGTTCATTTGCTGGACATGGAGCCCTTT 466
|||||||||| |||||||||||||||||||||||||||||| || |||||||||||||||
Sbjct 357 TCTCTTTTAATTGATAACAAGAAGCAATCGAGAGTTCATTTACTTGACATGGAGCCCTTT 416
Query 467 CAAGATGCTTTTGGAAGGAAGACTAAAAGAAAGCGACCAAAGCTGGTTGCTTCTGATTAT 526
||||||||||||||||||||||||||||| ||| |||| ||||| || ||||||||||||
Sbjct 417 CAAGATGCTTTTGGAAGGAAGACTAAAAGGAAGAGACCCAAGCTCGTGGCTTCTGATTAT 476
Query 527 GAAGCCTTGGTGAAGAAGGCAGCTGAATCTCAGGATGCATTTGAGGAGAAGAATGGGGCA 586
||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 477 GAAGCCTTGGTTAAGAAGGCAGCTGAATCTCAGGATGCATTTGAGGAGAAGAATGGGGCT 536
Query 587 GGTCCTTCTGGTGAAGGAGGAGAAGAAGAGGACGGGTTTAGAGACCTTGTGAGGCATACT 646
||||||||||| ||||||||||||||||| || |||||||| ||||||||||||||||||
Sbjct 537 GGTCCTTCTGGAGAAGGAGGAGAAGAAGAAGATGGGTTTAGGGACCTTGTGAGGCATACT 596
Query 647 ATGTTTGAAAAGGGACAGAGCAAGCGTATTTGGGGGGAACTTTACAAAGTCATAGACTCC 706
|||||||| |||||||||||||| ||||||||||| || |||||||||||||||||||||
Sbjct 597 ATGTTTGAGAAGGGACAGAGCAAACGTATTTGGGGTGAGCTTTACAAAGTCATAGACTCC 656
Query 707 TCTGATGTAATTGTCCAGGTTATTGATGCTAGGGATCCACAAGGTACTAGGTGTCATCAT 766
||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||
Sbjct 657 TCTGATGTAATTGTCCAGGTTATAGATGCTAGGGATCCACAAGGTACTAGGTGTCATCAT 716
Query 767 TTAGAGAAAACTTTGAAAGAGCATCACAAGCATAAACACATGATTCTATTATTGAACAAG 826
|||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||
Sbjct 717 TTAGAGAAAACTTTGAAAGAGCATCACAAGCATAAACACATGATTCTATTGTTGAACAAG 776
Query 827 TGTGATCTGGTTCCGGCTTGGGCCACTAAAGGATGGTTGAGAGTATTATCAAAGGAATAT 886
|||||||| || ||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 777 TGTGATCTTGTACCGGCTTGGGCCACTAAAGGATGGTTGAGAGTATTATCAAAGGAATAT 836
Query 887 CCAACTCTAGCATTCCATGCAAGTGTTAACAAGTCTTTCGGAAAGGGGTCACTTCTCTCA 946
||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||
Sbjct 837 CCAACTCTAGCATTCCATGCAAGTGTTAACAAGTCATTCGGAAAGGGGTCACTTCTCTCA 896
Query 947 GTTTTGAGGCAGTTTGCTCGTCTAAAGAGTGACAAGCAAGCCATATCTGTGGGATTTGTT 1006
|||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||
Sbjct 897 GTTTTGAGGCAGTTTGCTCGTCTAAAAAGTGACAAGCAAGCCATATCTGTGGGATTTGTT 956
Query 1007 GGGTATCCGAATGTTGGGAAATCATCAGTTATCAACACGCTGCGTACTAAAAATGTTTGC 1066
|||||||| ||||||||||||||||||||||||||||| |||||||||||||||||||||
Sbjct 957 GGGTATCCCAATGTTGGGAAATCATCAGTTATCAACACACTGCGTACTAAAAATGTTTGC 1016
Query 1067 AAGGTTGCTCCAATTCCAGGAGAGACTAAGGTCTGGCAATACATCACACTCACTAAGAGG 1126
|||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||
Sbjct 1017 AAGGTTGCTCCAATTCCAGGGGAGACTAAGGTCTGGCAATACATCACACTCACTAAGAGG 1076
Query 1127 ATTTTCTTGATTGATTGTCCTGGAGTTGTTTACCAGAGCCGTGATACCGAGACAGATATT 1186
||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||
Sbjct 1077 ATTTTCTTGATTGATTGTCCTGGAGTTGTTTACCAGAGCCGTGATACTGAGACAGATATT 1136
Query 1187 GTTCTCAAGGGAGTGGTAAGAGTTACAAACCTGGAAGATGCATCTGAGCACATTGGTGAA 1246
|| |||||||||||||||||||||||||||||||| |||||||||||||||||||| |||
Sbjct 1137 GTCCTCAAGGGAGTGGTAAGAGTTACAAACCTGGAGGATGCATCTGAGCACATTGGAGAA 1196
Query 1247 GTACTGAGGCGTGTCAAGAAAGAGCACTTGCAGAGAGCGTATAAAATAAAGGACTGGGAG 1306
|||||||||||||||||||| ||||||||||||||||||||||||||||| |||||||||
Sbjct 1197 GTACTGAGGCGTGTCAAGAAGGAGCACTTGCAGAGAGCGTATAAAATAAACGACTGGGAG 1256
Query 1307 GACGATCATGATTTCCTTCTTCAGTTATGCAAATCTTCTGGCAAACTGTTAAAGGGTGGA 1366
|| ||||||||||| |||||||||||||||||||| ||||||||||||||||||||||||
Sbjct 1257 GATGATCATGATTTTCTTCTTCAGTTATGCAAATCCTCTGGCAAACTGTTAAAGGGTGGA 1316
Query 1367 GAGCCTGATTTGATGACAGGAGCAAAGATGATACTCCATGACTGGCAAAGAGGTCGTATT 1426
|||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||
Sbjct 1317 GAGCCTGATTTGATGACAGGAGCAAAGATGATACTCCATGACTGGCAAAGAGGTCGCATA 1376
Query 1427 CCCTTCTTTGTCCCACCTCCTAAGCTAGACAATGTGGCCTCAGAATCAGAAGTAATAGTG 1486
|| |||||||||||||||||||||||||| ||||| ||||||||| ||| || ||||
Sbjct 1377 CCTTTCTTTGTCCCACCTCCTAAGCTAGATGCGGTGGCTTCAGAATCAAAAGCAACAGTG 1436
Query 1487 CCAGGCATAGATAAAGAAGCCATAGCTGATAACAGTCAGGCAGCTGCTGCATTGAAAGCC 1546
|||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1437 CCAGGCATAGATGAAGAAGCCATAGCTGATAACAGTCAGGCAGCTGCTGCATTGAAAGCC 1496
Query 1547 ATTGCTGGAATCATGTCTACCCAACAACAGAAAGATGTTCCTGTCCAAAGGGACTTCTAT 1606
|||||||||||||||||||||||||||||||||||||||||||||||||| || ||||||
Sbjct 1497 ATTGCTGGAATCATGTCTACCCAACAACAGAAAGATGTTCCTGTCCAAAGAGATTTCTAT 1556
Query 1607 GACGAGAAAGACCTCAAGGATGATAAGAAAGCAAAAGAGTCAACTGAAACAGACGCCGAA 1666
|||||||||||||||||||||||||| || ||||| ||||| || |||||||||| |||
Sbjct 1557 GACGAGAAAGACCTCAAGGATGATAATAAGGCAAAGGAGTCGACCGAAACAGACGGGGAA 1616
Query 1667 AACGGAACTGATGCTGAAGAAGATGAGGACGCGGTGTCGGAAGATGGAGTGGAAAGTGAC 1726
|||| ||||||||| |||||||||||||||||||||||||||||||||||||||||||
Sbjct 1617 AACGAAACTGATGCACAAGAAGATGAGGACGCGGTGTCGGAAGATGGAGTGGAAAGTGAG 1676
Query 1727 TCTGACGCAGATGAGGACGCAGTGTCAGAAAATGATGAAGAAGACGAGTCAGATTCTGCT 1786
| ||||| ||||||||||||||||||||||||||||| ||| |||||||||||||||||
Sbjct 1677 TTTGACGTGGATGAGGACGCAGTGTCAGAAAATGATGAGGAAAACGAGTCAGATTCTGCT 1736
Query 1787 GAGTAAT 1793
|||||||
Sbjct 1737 GAGTAAT 1743
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 72866638685
Database: halleri_transcript_ahg.fa
Posted date: Sep 25, 2014 2:02 AM
Number of letters in database: 38,939,717
Number of sequences in database: 32,672
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5