BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: halleri_transcript_ahg.fa
32,672 sequences; 38,939,717 total letters
Query= AT1G53000.1
Length=1269
Score E
Sequences producing significant alignments: (Bits) Value
Ahg474420 jgi|Araly1|474420|fgenesh2_kg.1__4374__AT1G53000.1 1491 0.0
Ahg949048 jgi|Araly1|949048|scaffold_800935.1 215 7e-55
> Ahg474420 jgi|Araly1|474420|fgenesh2_kg.1__4374__AT1G53000.1
Length=980
Score = 1491 bits (807), Expect = 0.0
Identities = 927/982 (94%), Gaps = 20/982 (2%)
Strand=Plus/Plus
Query 30 CGCTGGCTCGGCCACCGC-TTTTCAACAGAAC-A-A--TCTGTCT-TTT-TCTCTGTCTC 82
|||||||||||||||||| ||||||||||||| | | ||| ||| ||| ||||||||||
Sbjct 1 CGCTGGCTCGGCCACCGCTTTTTCAACAGAACAATATTTCTCTCTCTTTCTCTCTGTCTC 60
Query 83 ACTCTCTCACTCACTCACCGGAGCAAAGTGATGTCGGTGTG---TTC-T--TCG---TCT 133
|||| ||| |||||||||||||||||||||||||||||||| ||| | ||| |||
Sbjct 61 ACTCACTCTCTCACTCACCGGAGCAAAGTGATGTCGGTGTGTTCTTCATCGTCGTCTTCT 120
Query 134 TCTTCTTCTCAGAAAACATGGATTGTTA-ACGGGATCTTGGCCGGAACAGCGATTGCAGC 192
||||||||||||||||||||||||| || ||||||||||||||||| | |||||||| ||
Sbjct 121 TCTTCTTCTCAGAAAACATGGATTG-TACACGGGATCTTGGCCGGAGCGGCGATTGCTGC 179
Query 193 CGCAATCGGCGCACGTGCTTATCTGGGTCGATCCAAG-AAATTCCGGAGCCGGGTCGTCG 251
||||| |||||| |||||||||||||||||||| || ||||||||||||||||||||||
Sbjct 180 GGCAATTGGCGCAAGTGCTTATCTGGGTCGATCC-AGAAAATTCCGGAGCCGGGTCGTCG 238
Query 252 GAATCATTCCCGCACGTTACGCTTCCTCTCGATTCGAGGGTAAGCCTCTCGTGCAAATCC 311
||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 239 GAATCATCCCCGCACGTTACGCTTCCTCTCGATTCGAGGGTAAGCCTCTCGTGCAAATCC 298
Query 312 TCGGCAAACCCATGATCCAGAGAACTTGGGAGAGGTCGAAGTTAGCTACTACGCTTGATC 371
|||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||
Sbjct 299 TCGGCAAACCCATGATCCAGAGAACTTGGGAGAGGTCGAAATTAGCTACTACGCTTGATC 358
Query 372 ATATTGTTGTAGCCACTGATGATGAAAGAATCGCGGAGTGTTGTCGTGGATTTGGTGCCG 431
||||||||||||| || ||||||||||| || |||||||| |||||||||||||||||||
Sbjct 359 ATATTGTTGTAGCTACGGATGATGAAAGGATAGCGGAGTGCTGTCGTGGATTTGGTGCCG 418
Query 432 ATGTTATCATGACTTCAGAGTCTTGCAGAAATGGCACTGAGAGGTGCAACGAAGCGCTAG 491
|||| |||||||||||||||||||| ||||||||||||||| ||||||| ||||| ||||
Sbjct 419 ATGTCATCATGACTTCAGAGTCTTGTAGAAATGGCACTGAGCGGTGCAATGAAGCACTAG 478
Query 492 AAAAGCTGGAGAAGAAGTATGATGTCGTTGTTAACATTCAAGGAGATGAACCACTTATTG 551
||||||||||||| ||||||||||| ||||||||||||||||||||||||||||| ||||
Sbjct 479 AAAAGCTGGAGAAAAAGTATGATGTGGTTGTTAACATTCAAGGAGATGAACCACTCATTG 538
Query 552 AGCCTGAGATTATAGACGGTGTAGTCAAAGCACTTCAGGTAACACCGGATGCAGTGTTTA 611
|||||||||||||||| ||||||||||||||||||||||||||||| |||||||||||||
Sbjct 539 AGCCTGAGATTATAGATGGTGTAGTCAAAGCACTTCAGGTAACACCCGATGCAGTGTTTA 598
Query 612 GCACAGCGGTGACATCATTGAAACCAGAAGACGGGCTTGATCCTAACCGAGTTAAATGTG 671
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 599 GCACAGCGGTGACATCATTGAAACCAGAAGACGGGCTTGATCCTAACCGAGTTAAATGTG 658
Query 672 TGGTGGACAATCGTGGCTATGCTATCTATTTCTCAAGGGGTTTGATTCCTTATAACAAGA 731
|||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||
Sbjct 659 TGGTGGACAATCGTGGCTATGCTATCTATTTCTCGAGGGGTTTGATTCCTTATAACAAGA 718
Query 732 GTGGTAAAGTCAATCCAGATTTTCCGTACATGCTTCATCTTGGAATTCAGAGCTTTGATT 791
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 719 GTGGTAAAGTCAATCCAGATTTTCCGTACATGCTTCATCTTGGAATTCAGAGCTTTGATT 778
Query 792 CGAAGTTTCTGAAGGTATATTCAGAGCTTCAACCAACGCCATTGCAGCAAGAAGAGGATC 851
| ||||||||||| |||||||| |||||||||||||||||||||||||||||||||||||
Sbjct 779 CAAAGTTTCTGAAAGTATATTCGGAGCTTCAACCAACGCCATTGCAGCAAGAAGAGGATC 838
Query 852 TAGAACAGCTCAAAGTTCTTGAGAATGGCTACAAAATGAAGGTTATAAAGGTAGATCATG 911
|||| ||||||||||| ||||||||||||||||||||||||||||||||||| |||||||
Sbjct 839 TAGAGCAGCTCAAAGTCCTTGAGAATGGCTACAAAATGAAGGTTATAAAGGTGGATCATG 898
Query 912 AAGCTCATGGAGTTGACACACCCGATGATGTCGAAAAGATTGAATCTTTAATGCGCGAAA 971
|||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||
Sbjct 899 AAGCTCATGGAGTTGATACACCCGATGATGTCGAAAAGATTGAATCTTTAATGCGCGAAA 958
Query 972 GAAACATGTCCTAGTCCACAAA 993
||||| ||||||||||||||||
Sbjct 959 GAAACCTGTCCTAGTCCACAAA 980
> Ahg949048 jgi|Araly1|949048|scaffold_800935.1
Length=259
Score = 215 bits (116), Expect = 7e-55
Identities = 146/160 (91%), Gaps = 3/160 (2%)
Strand=Plus/Plus
Query 137 TCTTCTCAGAAA-ACATGGATTGTTAACGGGATCTTGGCCGGAACAGCGATTGCAGCCGC 195
|||||||| ||| |||||||||||| |||||||||| ||||||||| |||||||||||||
Sbjct 7 TCTTCTCA-AAAGACATGGATTGTTCACGGGATCTTAGCCGGAACAACGATTGCAGCCGC 65
Query 196 AATCGGCGCACGTGCTTATCTGGGTCGATCCAAGAAATTCCGGAGCCGGGTCGTCGGAAT 255
|| |||||| |||| ||||| ||| |||||||||||||||||||||||||| |||||||
Sbjct 66 GATTGGCGCAAGTGCGTATCTAGGTTGATCCAAGAAATTCCGGAGCCGGGTCATCGGAAT 125
Query 256 CATTCCCGCACGTTACGCTTCCTCTCGATTCGAGGG-TAA 294
||||| |||||||||||||||||||||||||||||| |||
Sbjct 126 CATTCGCGCACGTTACGCTTCCTCTCGATTCGAGGGCTAA 165
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 47424908748
Database: halleri_transcript_ahg.fa
Posted date: Sep 25, 2014 2:02 AM
Number of letters in database: 38,939,717
Number of sequences in database: 32,672
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5