BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: halleri_transcript_ahg.fa
32,672 sequences; 38,939,717 total letters
Query= AT1G53010.1
Length=537
Score E
Sequences producing significant alignments: (Bits) Value
Ahg474421 jgi|Araly1|474421|fgenesh2_kg.1__4375__AT1G53010.1 800 0.0
> Ahg474421 jgi|Araly1|474421|fgenesh2_kg.1__4375__AT1G53010.1
Length=534
Score = 800 bits (433), Expect = 0.0
Identities = 504/538 (94%), Gaps = 5/538 (1%)
Strand=Plus/Plus
Query 1 ATGAGCTCAGAAGAAGATGATGCGATTAGTCTCATCAGCGTTCTTGGTCTCGCTGTTTTC 60
||||||||||||||||||| | | |||||||||||||||||||||||||||| ||||||
Sbjct 1 ATGAGCTCAGAAGAAGATG-T--GTTTAGTCTCATCAGCGTTCTTGGTCTCGCCGTTTTC 57
Query 61 ATCGGTCTCTGCATCTTGCTCGTTGTTCTCATTGCAACCTCAGCTCTCATTCTTGTAATC 120
||||||||||||||||||||||||||||| ||||||||||||||| ||||||||||||||
Sbjct 58 ATCGGTCTCTGCATCTTGCTCGTTGTTCTTATTGCAACCTCAGCTATCATTCTTGTAATC 117
Query 121 TACGTCATCATCGATTGCATTCTGCGACCATTCTTAGGAACATGTCTCGACCTAGATCTC 180
|||| |||| |||| |||||||| ||||||||||||||||||||||||||||||||||||
Sbjct 118 TACGCCATCGTCGACTGCATTCTCCGACCATTCTTAGGAACATGTCTCGACCTAGATCTC 177
Query 181 GAAATCGGAGTACAAAGAGGCCAACAACGTGCTAGAATCGTTACCTACCACACAATCATC 240
|||||||||| |||||||||||||||||||||||||||||| || ||||| ||||||||
Sbjct 178 GAAATCGGAGGACAAAGAGGCCAACAACGTGCTAGAATCGTGACTTACCATGCAATCATC 237
Query 241 TCGACCGGTCTACGGTTACCAGATTTCGAGAGAGAAGGAAAAAAGCGCGGGCTGAAACAA 300
||||||||||||| |||||||||||||||||||||||||||||||| ||||||||||||
Sbjct 238 CCGACCGGTCTACGATTACCAGATTTCGAGAGAGAAGGAAAAAAGCGTGGGCTGAAACAA 297
Query 301 AGCGTGATCGAAACCCTACTACCGAAGTTGCTTGTTGGACAAGGCAACCATGAGGAGGAT 360
|||| ||||||||||||||| ||||||||||||||||||||||||||||||||||| ||
Sbjct 298 AGCGCGATCGAAACCCTACTCCCGAAGTTGCTTGTTGGACAAGGCAACCATGAGGACGAC 357
Query 361 GAAGAAAAGTCACTAGAATCAAGAGAATGCGCGATTTGTCTCAGTGGTTATGTCGTTAAT 420
|||| | |||||||||||||||||||||||||||||||||||||||||||||| | |||
Sbjct 358 AAAGAGAGGTCACTAGAATCAAGAGAATGCGCGATTTGTCTCAGTGGTTATGTCATAAAT 417
Query 421 GAAGAATGCAGAGTATTTCCTGTTTGCAGACATATCTATCATGCGCTTTGTATCGACGCT 480
|||||||||||||||||||| |||||||||||||||||||||||||||||||| ||||||
Sbjct 418 GAAGAATGCAGAGTATTTCCGGTTTGCAGACATATCTATCATGCGCTTTGTATTGACGCT 477
Query 481 TGGCTTAAGAATCATCTCACATGTCCTACTTGTCGTAAAGATCT-ACCAGAATCATGA 537
||||| ||||||||||||||||||||||||||||||||||| || |||||| ||||||
Sbjct 478 TGGCTAAAGAATCATCTCACATGTCCTACTTGTCGTAAAGA-CTTACCAGATTCATGA 534
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 19573817157
Database: halleri_transcript_ahg.fa
Posted date: Sep 25, 2014 2:02 AM
Number of letters in database: 38,939,717
Number of sequences in database: 32,672
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5