BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: halleri_transcript_ahg.fa
32,672 sequences; 38,939,717 total letters
Query= AT1G53020.1
Length=1182
Score E
Sequences producing significant alignments: (Bits) Value
Ahg923840 jgi|Araly1|923840|scaffold_105121.1 1295 0.0
Ahg923838 jgi|Araly1|923838|scaffold_105119.1 651 0.0
> Ahg923840 jgi|Araly1|923840|scaffold_105121.1
Length=1678
Score = 1295 bits (701), Expect = 0.0
Identities = 871/953 (91%), Gaps = 12/953 (1%)
Strand=Plus/Plus
Query 236 ATTCTTCCAGTGTTAAGAAACTTAAGGAAGAGTTTCTGCGCAACTTTAAAAGATTTGACT 295
||||||||| ||| | |||| ||||||||||||||||| | | |||||||||||||||
Sbjct 712 ATTCTTCCAATGTCAGGAAAATTAAGGAAGAGTTTCTGAGGGATTTTAAAAGATTTGACA 771
Query 296 CCGTTGAGGATTTCTCAGATCATCACTATGTTTCTAAGGGGAAAGCGTCAAAGCAGCACT 355
| |||||||||||||||||||||||||||| ||||||||| ||| | |||||||||||||
Sbjct 772 CTGTTGAGGATTTCTCAGATCATCACTATGCTTCTAAGGGTAAATCTTCAAAGCAGCACT 831
Query 356 CGAAGAATTGGGTGAAAAAGGTTCAAGAC-GAGTGGAAAATTCTTAACCA-GAATTTGCC 413
| |||||||||||||||||||| |||| | || ||||| |||||| | | | |||||||
Sbjct 832 CCAAGAATTGGGTGAAAAAGGTGCAAG-CAGATTGGAAGATTCTTGAGAATG-ATTTGCC 889
Query 414 AGAGACAATATTTGTCAGAGCCTGCGAATCAAGAATGGATCTTTTGAGAGCTGTAATTAT 473
|||| |||||| |||||||||||| |||||||||||||||||||||||||||||||||||
Sbjct 890 AGAGGCAATATCTGTCAGAGCCTGTGAATCAAGAATGGATCTTTTGAGAGCTGTAATTAT 949
Query 474 TGGAGCCGAGGGAACTCCTTACCATGACGGTCTTTTCTTTTTCGATATTCAGTTCCCAGA 533
||||||||||||||||||||||||||| ||||||||||| ||||||||||||||||||||
Sbjct 950 TGGAGCCGAGGGAACTCCTTACCATGATGGTCTTTTCTTCTTCGATATTCAGTTCCCAGA 1009
Query 534 TACCTATCCTTCAGTGCCACCAAATGTTTATTACCATTCCGGTGGGCTTAGAATCAACCC 593
||||||||||||||| |||||||| ||| |||||||||||||||||||||||||||||||
Sbjct 1010 TACCTATCCTTCAGTACCACCAAAAGTTCATTACCATTCCGGTGGGCTTAGAATCAACCC 1069
Query 594 GAATCTATACAACTGTGGTAAGGTATGCTTGAGTCTTCTCGGTACCT-GGCATGGTAACG 652
|||||||||||| |||||||| ||||||||||||||||||||||||| ||| || | |
Sbjct 1070 GAATCTATACAATTGTGGTAAAGTATGCTTGAGTCTTCTCGGTACCTGGGC-CGGCAGTG 1128
Query 653 CGAGGCA-AAGCTGGCTCCCAAAGGAGTCCACAATGTTACAGGTTCTTGTCTCAATACAA 711
| ||| | || ||||||||||||||||| |||||||||||| ||||||||||||| |||
Sbjct 1129 CTAGGGAGAA-ATGGCTCCCAAAGGAGTCGACAATGTTACAGCTTCTTGTCTCAATCCAA 1187
Query 712 GCACTTGTCTTGAATGAACAACCATACTTTAACGAACCTGGCTACGGCCTGATCAAGGGG 771
||||| ||||||||||| |||||||||||||||| |||||||||| | || || ||||
Sbjct 1188 GCACTCATCTTGAATGAAAAACCATACTTTAACGAGCCTGGCTACGTACAGAGCATGGGG 1247
Query 772 ACTTG-GTTAGGCGAGTCCAAGTCTAAAGTTTACAGTGAGAACGTATTTCTATTGTCGTT 830
|| || | |||||||||| | |||||||||||||||||||||||||| |||||||||||
Sbjct 1248 AC-TGCATCAGGCGAGTCCCATTCTAAAGTTTACAGTGAGAACGTATTCCTATTGTCGTT 1306
Query 831 AAAGACTATGGTTTACAGCATGAGAAAACCACCCCAGCATTTTGAAGAGTATGTTCAAAA 890
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1307 AAAGACTATGGTTTACAGCATGAGAAAACCACCCCAGCATTTTGAAGAGTATGTTCAAAA 1366
Query 891 CCATTACTTTGTCCGGTCTCACGACATCGTGAAAGCATGCAATGCTTATAAAGCTGGCGC 950
||||| ||| ||||||||||||||||| |||||||| |||||||||||||||||||| ||
Sbjct 1367 CCATTTCTTCGTCCGGTCTCACGACATTGTGAAAGCGTGCAATGCTTATAAAGCTGGAGC 1426
Query 951 TCCGCTTGGATCGATGGTTAAAGGAGGAGTCCAAGACCTTGAACAAGCTAGACAGAGCGG 1010
|||||||||||||||||||||||| |||||||||||||||||||||||||| ||||||||
Sbjct 1427 TCCGCTTGGATCGATGGTTAAAGGCGGAGTCCAAGACCTTGAACAAGCTAGCCAGAGCGG 1486
Query 1011 CTCCAAGAAGTTTAAGACCGATGTAGCTAGCTTTATGCAGACAGTGGTTGATGAATTCGT 1070
|||||||||||||||||||||||||||| |||||||||||||||| ||||||||||||||
Sbjct 1487 CTCCAAGAAGTTTAAGACCGATGTAGCTCGCTTTATGCAGACAGTTGTTGATGAATTCGT 1546
Query 1071 TAAACTAGGAGTCAAGGAGCTTGCAGAAAAACCAAAACCGCCTGTGAACAATGCTAACAC 1130
|||||||||||||||||||||||||||||||||||||| |||| || || |||||||||
Sbjct 1547 CAAACTAGGAGTCAAGGAGCTTGCAGAAAAACCAAAACCACCTGAGAGCAGTGCTAACAC 1606
Query 1131 AGAGAATCAGAGCAAGaaaa-aaaCCCGTAAGAGAAGCAGATCATCGAGGTGA 1182
||||||||||||||| |||| ||||| ||||||||||||||||||||||||||
Sbjct 1607 AGAGAATCAGAGCAATAAAACAAACC-GTAAGAGAAGCAGATCATCGAGGTGA 1658
> Ahg923838 jgi|Araly1|923838|scaffold_105119.1
Length=851
Score = 651 bits (352), Expect = 0.0
Identities = 510/585 (87%), Gaps = 16/585 (3%)
Strand=Plus/Plus
Query 494 ACCATGACGGTCTTTTCTTTTTCGATATTCAGTTCCCAGATACCTATCCTTCAGTGCCAC 553
||||||||||||| ||||||||||| ||||||||||||||||||||||||||||||||||
Sbjct 143 ACCATGACGGTCTCTTCTTTTTCGAAATTCAGTTCCCAGATACCTATCCTTCAGTGCCAC 202
Query 554 CAAATGTTTATTACCATTCCGGTGGGCTTAGAATCAACCCGAATCTATACAACTGTGGTA 613
|||| ||| |||||||||| || ||||||||||||||||||||| ||||||| |||||||
Sbjct 203 CAAAAGTTCATTACCATTCGGGCGGGCTTAGAATCAACCCGAATTTATACAAATGTGGTA 262
Query 614 AGGTATGCTTGAGTCTTCTCGGTACCTGG-CATGGTAACGCGAGGCA-AAGCTGGCTCCC 671
| ||||||||||||||| || |||||||| | ||||| ||||| | || ||||||||
Sbjct 263 AAGTATGCTTGAGTCTTATCCGTACCTGGACC-GGTAAAACGAGGGAGAAA-TGGCTCCC 320
Query 672 AAAGGAGTCCACAATGTTACAGGTTCTTGTCTCAATACAAGCACTTGTCTTGAATGAACA 731
||||||||||||||||| ||| ||||||||||||| |||||||| ||||||||||| |
Sbjct 321 CAAGGAGTCCACAATGTTGCAGCTTCTTGTCTCAATCCAAGCACTAATCTTGAATGAAAA 380
Query 732 ACCATACTTTAACGAACCTGGCTACG-GCCTGATC-A-AGGGGACTTGGTTAGGCGAGTC 788
|||||| ||||||||||||||||||| || ||| | |||| ||| | |||||||||
Sbjct 381 ACCATATTTTAACGAACCTGGCTACGAGCA--ATCCATAGGG-ACTCCATCAGGCGAGTC 437
Query 789 CAAGTCTAAAGTTTACAGTGAGAACGTATTTCTATTGTCGTTAAAGACTATGGTTTACAG 848
|| |||| |||||||||||||||||||||||| ||||||||| |||||||||||||
Sbjct 438 TTTTTCCAAAGCTTACAGTGAGAACGTATTTCTATTTTCGTTAAAGGCTATGGTTTACAG 497
Query 849 CATGAGAAAACCACCCCAGCATTTTGAAGAGTATGTTCAAAACCATTACTTTGTCCGGTC 908
|||||||||||||||| ||||||||||||||| ||||| ||||| ||| ||||||||
Sbjct 498 CATGAGAAAACCACCCGAGCATTTTGAAGAGTTTGTTCGTTGCCATTTCTTCGTCCGGTC 557
Query 909 TCACGACATCGTGAAAGCATGCAATGCTTATAAAGCTGGCGCTCC-GCTTGGATCGATGG 967
||||||||| |||||||| ||||||||||||||| ||| ||| | | ||||||| ||||
Sbjct 558 TCACGACATAGTGAAAGCGTGCAATGCTTATAAAAATGGAGCTTCTG-TTGGATCAATGG 616
Query 968 TTAAAGGA-GGAGTCCAAGACCTTG-AACAAGCTAGACAGAGCGGCTCCAAGAAGTTTAA 1025
|||||| | |||||| |||||| || || || ||||||||||||||||||||| |||||
Sbjct 617 TTAAAG-ATGGAGTCAAAGACCCTGCAAAAA-CTAGACAGAGCGGCTCCAAGACGTTTAG 674
Query 1026 GACCGATGTAGCTAGCTTTATGCAGACAGTGGTTGATGAATTCGT 1070
|||| ||||||||||||||||| ||||||||||||||||||||||
Sbjct 675 GACCAATGTAGCTAGCTTTATGAAGACAGTGGTTGATGAATTCGT 719
Score = 134 bits (72), Expect = 2e-30
Identities = 76/78 (97%), Gaps = 0/78 (0%)
Strand=Plus/Plus
Query 424 TTTGTCAGAGCCTGCGAATCAAGAATGGATCTTTTGAGAGCTGTAATTATTGGAGCCGAG 483
||||||||||| || |||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1 TTTGTCAGAGCTTGTGAATCAAGAATGGATCTTTTGAGAGCTGTAATTATTGGAGCCGAG 60
Query 484 GGAACTCCTTACCATGAC 501
||||||||||||||||||
Sbjct 61 GGAACTCCTTACCATGAC 78
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 44108214969
Database: halleri_transcript_ahg.fa
Posted date: Sep 25, 2014 2:02 AM
Number of letters in database: 38,939,717
Number of sequences in database: 32,672
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5