BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: halleri_transcript_ahg.fa
32,672 sequences; 38,939,717 total letters
Query= AT1G53025.1
Length=2029
Score E
Sequences producing significant alignments: (Bits) Value
Ahg923840 jgi|Araly1|923840|scaffold_105121.1 2567 0.0
Ahg923838 jgi|Araly1|923838|scaffold_105119.1 130 4e-29
> Ahg923840 jgi|Araly1|923840|scaffold_105121.1
Length=1678
Score = 2567 bits (1390), Expect = 0.0
Identities = 1591/1686 (94%), Gaps = 22/1686 (1%)
Strand=Plus/Plus
Query 130 AAACTTTGGGAATTTCGTCAATGGAGCCTGACGTGGTGGAGATCCCTCCTCCTCCTCTGA 189
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1 AAACTTTGGGAATTTCGTCAATGGAGCCTGACGTGGTGGAGATCCCTCCTCCTCCTCTGA 60
Query 190 TCGCTTCGGGTTCTAGAACTCGTAAACCCAGAAAGGCTGTTCCTGAAGTGATTGATGTGG 249
|||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 61 TCGCTTCGGGCTCTAGAACTCGTAAACCCAGAAAGGCTGTTCCTGAAGTGATTGATGTGG 120
Query 250 AAAGTTATGAATTCCGCAATGTTGGTGTTGTTAA--G-GATAACAATGTTGTTGATAAGA 306
||| |||||||||||| |||||||||| | |||| | | ||||||||||||||||||||
Sbjct 121 AAAATTATGAATTCCGGAATGTTGGTGGTCTTAATGGTGGTAACAATGTTGTTGATAAGA 180
Query 307 AGAACAAAGGGAAGGCAATACAAGTTGACTCCTTTTCTTTCAACAACGTTCAATCTCATC 366
|||||||||||||||||||||||||||||| |||||||| ||||||||||||||||||||
Sbjct 181 AGAACAAAGGGAAGGCAATACAAGTTGACTGCTTTTCTTACAACAACGTTCAATCTCATC 240
Query 367 ATCATGGATCGTCGCTGCTTAACTTAGAGACGTTCCAAGACTATTATGGTCATAAGAATA 426
||| |||||| |||| | ||||||||||||||||||||||||||||||||||||||||||
Sbjct 241 ATCCTGGATCTTCGCCGATTAACTTAGAGACGTTCCAAGACTATTATGGTCATAAGAATA 300
Query 427 TCCCTTTTAGTGAATTTGCTAATCAACCAATTGATGTTGATGACTACTCAATGTATCAAG 486
|||||||||| ||||| ||||||||||||||||||||||||||||| |||||| |||||
Sbjct 301 ACCCTTTTAGTCAATTTTCTAATCAACCAATTGATGTTGATGACTACACAATGTTTCAAG 360
Query 487 ACGTTCTAGATCCTAAGGATGTTCCAGCTGGTGCAGAGGTGACG---GTACCTTGGGGTT 543
||||||||||||||||| |||| ||||| ||||||||||||||| |||||||||||||
Sbjct 361 ACGTTCTAGATCCTAAGAATGTCCCAGCCGGTGCAGAGGTGACGACAGTACCTTGGGGTT 420
Query 544 TAAATTCGAGCAGTAAGGGAACTGCGAAATCAAGTATAAGCA-TTATGAGAAGTCAATCC 602
|||||||||||||||||||||| ||||||||||||| ||||| || |||||||||||||
Sbjct 421 TAAATTCGAGCAGTAAGGGAACAGCGAAATCAAGTAGAAGCAGTT-TGAGAAGTCAATCG 479
Query 603 ATGAAAGGA-TATGGAACAGT-ATCTCTGGCAACGACTAATGTTCCTCAATTATGGGATT 660
|||||| || |||||||| | |||||||||||| ||| |||||||||||||||||||||
Sbjct 480 ATGAAA-GAGTATGGAAC-CTCATCTCTGGCAACTACTCATGTTCCTCAATTATGGGATT 537
Query 661 ATACTTTGCCTCAGCAGAATCAGGCTATCTATTCTTCTGTATCGTTTTCTGCGGTTCAAC 720
|| |||||||||| ||||||||| ||||||||||||||||||||||||||| ||||||||
Sbjct 538 ATTCTTTGCCTCAACAGAATCAGCCTATCTATTCTTCTGTATCGTTTTCTGTGGTTCAAC 597
Query 721 CTCAGACTCCTGATGTAGTGATGGTCACC-AATCCTACTCCAAACCCTTTTAG-TTATGA 778
||||||||||||||||| |||||||| || ||||||||||||||||||||||| || |||
Sbjct 598 CTCAGACTCCTGATGTATTGATGGTC-CCGAATCCTACTCCAAACCCTTTTAGATT-TGA 655
Query 779 TGCTTCTGCTAGTTCTTCTCATCCTATAGCGGCTGAGCCTATTTCTTCAGTTCAGGATTC 838
|||||||||||||||||||| ||||||||||||| ||||||||||||||| ||||||||
Sbjct 656 TGCTTCTGCTAGTTCTTCTCGCCCTATAGCGGCTGGGCCTATTTCTTCAGTCCAGGATTC 715
Query 839 TTCCAATGCT-AGGAAACTTAAGGAAGAGTTTCTGAGGGATTTTAAAAGATTTGACACCG 897
|||||||| | |||||| |||||||||||||||||||||||||||||||||||||||| |
Sbjct 716 TTCCAATG-TCAGGAAAATTAAGGAAGAGTTTCTGAGGGATTTTAAAAGATTTGACACTG 774
Query 898 TCGAGGATTTCTCAGATCATCACTATGCTTCAAAGGGTAAATCTTCAAAGCAGCACTCGA 957
| ||||||||||||||||||||||||||||| |||||||||||||||||||||||||| |
Sbjct 775 TTGAGGATTTCTCAGATCATCACTATGCTTCTAAGGGTAAATCTTCAAAGCAGCACTCCA 834
Query 958 AGAATTGGGTGAAAAAGGTTCAAGCAGATTGGAAGATTCTTGAGAATGATTTGCCAGAGG 1017
||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||
Sbjct 835 AGAATTGGGTGAAAAAGGTGCAAGCAGATTGGAAGATTCTTGAGAATGATTTGCCAGAGG 894
Query 1018 CAATATCTGTCAGAGCCTGTGAATCAAGAATGGATCTTTTGAGAGCTGTAATTATTGGAG 1077
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 895 CAATATCTGTCAGAGCCTGTGAATCAAGAATGGATCTTTTGAGAGCTGTAATTATTGGAG 954
Query 1078 CTGAGGGAACTCCTTACCATGACGGTCTTTTCTTCTTCGATATTCAGTTCCCAGATACTT 1137
| |||||||||||||||||||| ||||||||||||||||||||||||||||||||||| |
Sbjct 955 CCGAGGGAACTCCTTACCATGATGGTCTTTTCTTCTTCGATATTCAGTTCCCAGATACCT 1014
Query 1138 ATCCTTCAGTGCCACCGAATGTTCATTACCATTCTGGTGGGCTTAGAATCAACCCGAATC 1197
|||||||||| ||||| || |||||||||||||| |||||||||||||||||||||||||
Sbjct 1015 ATCCTTCAGTACCACCAAAAGTTCATTACCATTCCGGTGGGCTTAGAATCAACCCGAATC 1074
Query 1198 TATACAATTGTGGGAAAGTATGCTTGAGTCTTCTCGGTACCTGGGCAGGTAGCGCGAGGG 1257
||||||||||||| |||||||||||||||||||||||||||||||| || || || ||||
Sbjct 1075 TATACAATTGTGGTAAAGTATGCTTGAGTCTTCTCGGTACCTGGGCCGGCAGTGCTAGGG 1134
Query 1258 AGAAATGGCTCCCAAATGAGTCGACAATGTTACAGCTTCTTGTCTCAATCCAAGCACTCA 1317
|||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||
Sbjct 1135 AGAAATGGCTCCCAAAGGAGTCGACAATGTTACAGCTTCTTGTCTCAATCCAAGCACTCA 1194
Query 1318 TCTTGAATGAAAAACCATACTTTAACGAACCTGGCTACGTACAGAGCGCGGGGACTGCAT 1377
|||||||||||||||||||||||||||| |||||||||||||||||| |||||||||||
Sbjct 1195 TCTTGAATGAAAAACCATACTTTAACGAGCCTGGCTACGTACAGAGCATGGGGACTGCAT 1254
Query 1378 CAGGCGAGTCCAAGTCTAAAGTTTACAGTGAGAACGTATTTCTATTGTCGTTAAAGACTA 1437
||||||||||| | |||||||||||||||||||||||||| |||||||||||||||||||
Sbjct 1255 CAGGCGAGTCCCATTCTAAAGTTTACAGTGAGAACGTATTCCTATTGTCGTTAAAGACTA 1314
Query 1438 TGGTTTACAGCATAAGAAGACCACCCCAGCATTTTGAAGAGTATGTTCAAAACCATTACT 1497
||||||||||||| |||| |||||||||||||||||||||||||||||||||||||| ||
Sbjct 1315 TGGTTTACAGCATGAGAAAACCACCCCAGCATTTTGAAGAGTATGTTCAAAACCATTTCT 1374
Query 1498 TTGTCCGGTCTCACGACATTGTGAAAGCATGCAATGCTTATAAAGCTGGAGCTCCGCTTG 1557
| |||||||||||||||||||||||||| |||||||||||||||||||||||||||||||
Sbjct 1375 TCGTCCGGTCTCACGACATTGTGAAAGCGTGCAATGCTTATAAAGCTGGAGCTCCGCTTG 1434
Query 1558 GATCGATGGTTAAAGGCGGAGTCCAAGACCTTGAAGAAGCTAGACAGAGCGGCTCCAAGA 1617
||||||||||||||||||||||||||||||||||| ||||||| ||||||||||||||||
Sbjct 1435 GATCGATGGTTAAAGGCGGAGTCCAAGACCTTGAACAAGCTAGCCAGAGCGGCTCCAAGA 1494
Query 1618 AGTTTAAGACCGATGTAGCTAGCTTTATGCAGACAGTGGTTGATGAATTCGTCAAACTAG 1677
|||||||||||||||||||| |||||||||||||||| ||||||||||||||||||||||
Sbjct 1495 AGTTTAAGACCGATGTAGCTCGCTTTATGCAGACAGTTGTTGATGAATTCGTCAAACTAG 1554
Query 1678 GAGTCAAGGAGCTTGCAGAAAAACCAGAACCGCCT-ATGAGCAATGCTAACACAGAGAAT 1736
|||||||||||||||||||||||||| |||| ||| | ||||| ||||||||||||||||
Sbjct 1555 GAGTCAAGGAGCTTGCAGAAAAACCAAAACCACCTGA-GAGCAGTGCTAACACAGAGAAT 1613
Query 1737 CAGAGCAAGaaaa-aaaCCCGTAAGAGAAGCAGATCATCGAGGTGAGCCAAATCCACCAA 1795
|||||||| |||| ||||| ||||||||||||||||||||||||||||||||||||||||
Sbjct 1614 CAGAGCAATAAAACAAACC-GTAAGAGAAGCAGATCATCGAGGTGAGCCAAATCCACCAA 1672
Query 1796 ATGTTT 1801
||||||
Sbjct 1673 ATGTTT 1678
> Ahg923838 jgi|Araly1|923838|scaffold_105119.1
Length=851
Score = 130 bits (70), Expect = 4e-29
Identities = 74/76 (97%), Gaps = 0/76 (0%)
Strand=Plus/Plus
Query 1025 TGTCAGAGCCTGTGAATCAAGAATGGATCTTTTGAGAGCTGTAATTATTGGAGCTGAGGG 1084
||||||||| |||||||||||||||||||||||||||||||||||||||||||| |||||
Sbjct 3 TGTCAGAGCTTGTGAATCAAGAATGGATCTTTTGAGAGCTGTAATTATTGGAGCCGAGGG 62
Query 1085 AACTCCTTACCATGAC 1100
||||||||||||||||
Sbjct 63 AACTCCTTACCATGAC 78
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 76294760735
Database: halleri_transcript_ahg.fa
Posted date: Sep 25, 2014 2:02 AM
Number of letters in database: 38,939,717
Number of sequences in database: 32,672
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5