BLASTN 2.2.26+


Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.



Database: halleri_transcript_ahg.fa
           32,672 sequences; 38,939,717 total letters



Query= AT1G53030.1

Length=530
                                                                      Score     E
Sequences producing significant alignments:                          (Bits)  Value

  Ahg923841 jgi|Araly1|923841|scaffold_105122.1                        324    5e-88
  Ahg478971 jgi|Araly1|478971|fgenesh2_kg.3__1672__AT3G15352.1         171    6e-42


> Ahg923841 jgi|Araly1|923841|scaffold_105122.1
Length=262

 Score =  324 bits (175),  Expect = 5e-88
 Identities = 209/226 (92%), Gaps = 0/226 (0%)
 Strand=Plus/Plus

Query  87   GGATGAGTGGTTTACAAGCACAAGACAGTGCGTGTTCTTTGGACAAGCCAAGCAAAGATG  146
            |||||||||||| |||||| |||||||||||||| || |||||| ||||||||||| |||
Sbjct  22   GGATGAGTGGTTCACAAGCTCAAGACAGTGCGTGCTCCTTGGACCAGCCAAGCAAAAATG  81

Query  147  TAGTTGCCACAGAGACAAAACCAAAGAAGAGGATATGTTGTGCTTGTCCTGATACAAAGA  206
            | | |||||||||||| |||||||||||||||||||| ||||||||||||||||||||||
Sbjct  82   TGGCTGCCACAGAGACGAAACCAAAGAAGAGGATATGCTGTGCTTGTCCTGATACAAAGA  141

Query  207  AACTTAGAGATGAATGCATTGTAGAACACGGTGAATCCGCTTGCACGAAATGGATCGAAG  266
            | || |||||||| |||||||||||||||||||||||||||||||| |||||||||||||
Sbjct  142  AGCTAAGAGATGAGTGCATTGTAGAACACGGTGAATCCGCTTGCACCAAATGGATCGAAG  201

Query  267  CTCATATTTTGTGTCTTCGATCAGAGGGTTTCAAAGTTTGAGAGTA  312
            ||||| ||| |||||||||||| |||||||||||||||||||||||
Sbjct  202  CTCATCTTTCGTGTCTTCGATCCGAGGGTTTCAAAGTTTGAGAGTA  247


> Ahg478971 jgi|Araly1|478971|fgenesh2_kg.3__1672__AT3G15352.1
Length=507

 Score =  171 bits (92),  Expect = 6e-42
 Identities = 132/152 (87%), Gaps = 0/152 (0%)
 Strand=Plus/Plus

Query  156  CAGAGACAAAACCAAAGAAGAGGATATGTTGTGCTTGTCCTGATACAAAGAAACTTAGAG  215
            ||||||| ||||||||||||||||||||||||||||| |||||||| ||||| || ||||
Sbjct  180  CAGAGACGAAACCAAAGAAGAGGATATGTTGTGCTTGCCCTGATACCAAGAAGCTGAGAG  239

Query  216  ATGAATGCATTGTAGAACACGGTGAATCCGCTTGCACGAAATGGATCGAAGCTCATATTT  275
            |||| |||||||| || || |||||||| |||||||| ||||||||||| |||||||   
Sbjct  240  ATGAGTGCATTGTCGAGCATGGTGAATCGGCTTGCACTAAATGGATCGAGGCTCATAAAA  299

Query  276  TGTGTCTTCGATCAGAGGGTTTCAAAGTTTGA  307
            ||||||| ||| |||| |||||||| || |||
Sbjct  300  TGTGTCTCCGAGCAGAAGGTTTCAACGTCTGA  331



Lambda     K      H
    1.33    0.621     1.12 

Gapped
Lambda     K      H
    1.28    0.460    0.850 

Effective search space used: 19306728034


  Database: halleri_transcript_ahg.fa
    Posted date:  Sep 25, 2014  2:02 AM
  Number of letters in database: 38,939,717
  Number of sequences in database:  32,672



Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5